Wall clock time and date at job start Tue Mar 31 2020 22:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47198 * 2 1 4 4 N 1.46896 * 109.47260 * 179.97438 * 3 2 1 5 5 C 1.46899 * 110.99794 * 293.95324 * 4 3 2 6 6 C 1.46902 * 110.99817 * 170.00182 * 4 3 2 7 7 C 1.50701 * 109.46897 * 189.99928 * 6 4 3 8 8 O 1.21281 * 119.99972 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00011 * 179.97438 * 7 6 4 10 10 C 1.47081 * 120.88216 * 179.97438 * 9 7 6 11 11 C 1.53237 * 108.52169 * 231.20630 * 10 9 7 12 12 N 1.46898 * 109.34316 * 306.17056 * 11 10 9 13 13 C 1.46899 * 111.00376 * 187.24937 * 12 11 10 14 14 H 1.08995 * 110.77955 * 295.98674 * 13 12 11 15 15 C 1.55160 * 110.71632 * 59.21981 * 13 12 11 16 16 C 1.54912 * 101.58218 * 153.86236 * 15 13 12 17 17 N 1.47430 * 104.83317 * 322.99319 * 16 15 13 18 18 C 1.36927 * 125.64676 * 204.09051 * 17 16 15 19 19 H 1.08004 * 120.00086 * 168.01323 * 18 17 16 20 20 C 1.38809 * 120.00238 * 348.01657 * 18 17 16 21 21 N 1.31620 * 119.99817 * 325.88372 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 145.88353 * 20 18 17 23 23 H 1.48502 * 109.47114 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47382 * 239.99993 * 22 20 18 25 25 H 1.48503 * 109.47242 * 119.99614 * 22 20 18 26 26 C 1.47026 * 108.70027 * 24.35126 * 17 16 15 27 27 C 1.46898 * 111.26942 * 63.10254 * 12 11 10 28 28 C 1.47083 * 120.87967 * 0.02562 * 9 7 6 29 29 H 1.09000 * 109.46879 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47334 * 300.00659 * 1 2 3 31 31 H 1.09005 * 109.46488 * 60.00476 * 1 2 3 32 32 H 1.08992 * 109.47769 * 239.99950 * 2 1 3 33 33 H 1.08997 * 109.46766 * 119.99398 * 2 1 3 34 34 H 1.09005 * 109.47024 * 59.99230 * 3 2 1 35 35 H 1.09001 * 109.46784 * 299.99912 * 3 2 1 36 36 H 1.09006 * 109.47025 * 296.04295 * 5 4 3 37 37 H 1.08996 * 109.47215 * 56.04700 * 5 4 3 38 38 H 1.09003 * 109.46919 * 176.04848 * 5 4 3 39 39 H 1.08996 * 109.47243 * 70.00105 * 6 4 3 40 40 H 1.08999 * 109.46734 * 309.99363 * 6 4 3 41 41 H 1.09004 * 109.62638 * 111.49857 * 10 9 7 42 42 H 1.08997 * 109.78792 * 351.01529 * 10 9 7 43 43 H 1.09001 * 109.49203 * 186.21205 * 11 10 9 44 44 H 1.08999 * 109.51685 * 66.14385 * 11 10 9 45 45 H 1.09005 * 111.00202 * 35.79149 * 15 13 12 46 46 H 1.08996 * 111.00883 * 271.94257 * 15 13 12 47 47 H 1.08998 * 110.37007 * 204.15288 * 16 15 13 48 48 H 1.09005 * 110.36224 * 81.82807 * 16 15 13 49 49 H 0.96995 * 120.00258 * 354.27514 * 21 20 18 50 50 H 1.09000 * 109.87767 * 118.13484 * 26 17 16 51 51 H 1.08999 * 109.87984 * 239.29338 * 26 17 16 52 52 H 1.09000 * 109.49145 * 56.85664 * 27 12 11 53 53 H 1.08997 * 109.49821 * 176.93524 * 27 12 11 54 54 H 1.08999 * 109.63019 * 248.50048 * 28 9 7 55 55 H 1.09001 * 109.62929 * 8.88967 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0348 0.8860 1.2543 6 6 4.0355 2.7932 -0.2375 7 6 5.5219 2.7183 -0.4742 8 8 6.0871 1.6456 -0.4467 9 7 6.2232 3.8435 -0.7163 10 6 7.6745 3.7930 -0.9494 11 6 8.3523 4.8057 -0.0203 12 7 7.7384 6.1267 -0.2098 13 6 8.4712 7.1595 0.5345 14 1 8.4135 6.9772 1.6076 15 6 9.9495 7.2274 0.0681 16 6 10.3147 8.6948 0.4043 17 7 9.0942 9.4656 0.1048 18 6 9.0477 10.7995 -0.2010 19 1 8.1389 11.2325 -0.5923 20 6 10.1685 11.5953 -0.0081 21 7 10.9825 11.3530 0.9975 22 14 10.5218 13.0100 -1.1757 23 1 9.4625 13.0707 -2.2147 24 1 11.8407 12.7988 -1.8246 25 1 10.5426 14.2857 -0.4157 26 6 7.9346 8.5662 0.1950 27 6 6.3187 6.1136 0.1674 28 6 5.5576 5.1546 -0.7535 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5137 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7434 1.5266 2.0867 37 1 3.6292 -0.1142 1.4061 38 1 5.1222 0.8327 1.2002 39 1 3.8372 3.4190 0.6326 40 1 3.5494 3.2234 -1.1131 41 1 7.8878 4.0485 -1.9874 42 1 8.0481 2.7918 -0.7347 43 1 9.4150 4.8612 -0.2562 44 1 8.2256 4.4910 1.0156 45 1 10.0303 7.0402 -1.0027 46 1 10.5697 6.5312 0.6326 47 1 11.1403 9.0333 -0.2218 48 1 10.5737 8.7891 1.4589 49 1 10.7566 10.6730 1.6512 50 1 7.2609 8.9077 0.9808 51 1 7.4103 8.5404 -0.7603 52 1 6.2199 5.7805 1.2005 53 1 5.9065 7.1177 0.0676 54 1 5.5670 5.5413 -1.7725 55 1 4.5281 5.0525 -0.4101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324559997.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:13 Heat of formation + Delta-G solvation = -10.252189 kcal Electronic energy + Delta-G solvation = -30380.104205 eV Core-core repulsion = 26452.134702 eV Total energy + Delta-G solvation = -3927.969503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.44563 -40.15689 -38.65340 -37.87166 -35.74322 -34.17289 -33.92534 -32.48075 -31.10604 -29.84436 -29.11526 -27.94656 -27.14095 -25.90254 -24.88469 -24.02511 -22.42045 -21.92302 -21.65885 -21.19025 -19.92297 -19.55939 -18.42843 -17.22709 -17.04402 -16.98251 -16.53955 -16.35616 -16.07785 -15.96217 -15.75672 -15.41631 -15.29650 -15.04960 -14.97986 -14.91280 -14.37156 -14.20025 -13.82162 -13.71078 -13.50282 -13.32465 -13.00816 -12.79665 -12.74348 -12.67717 -12.60590 -12.58707 -12.44821 -12.38163 -12.28894 -11.96724 -11.89086 -11.86546 -11.81724 -11.69014 -11.63103 -11.45366 -10.75641 -10.46571 -9.84755 -9.36004 -9.28911 -9.03641 -8.39646 -5.27684 1.58514 1.58762 1.65676 1.82834 1.83506 2.58999 2.75131 2.92511 3.12917 3.45939 3.55950 3.59740 3.85322 3.91930 3.95046 3.99594 4.11345 4.14741 4.19668 4.22469 4.24323 4.29936 4.35212 4.42164 4.45918 4.50429 4.51754 4.54385 4.58858 4.68275 4.71019 4.79987 4.83411 4.84081 4.86764 4.88051 4.89308 4.99907 5.04130 5.08145 5.08999 5.23348 5.29806 5.29895 5.40414 5.43353 5.67650 5.89741 5.98052 6.02737 6.07380 6.29286 6.40815 6.87825 7.16107 7.70656 8.29511 8.94959 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.001926 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.269337 B =14535.074804 C =15078.817302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.056 3.944 4 N -0.545 5.545 5 C 0.022 3.978 6 C 0.040 3.960 7 C 0.513 3.487 8 O -0.566 6.566 9 N -0.614 5.614 10 C 0.124 3.876 11 C 0.048 3.952 12 N -0.528 5.528 13 C 0.091 3.909 14 H 0.044 0.956 15 C -0.108 4.108 16 C 0.147 3.853 17 N -0.624 5.624 18 C -0.351 4.351 19 H 0.061 0.939 20 C -0.075 4.075 21 N -0.937 5.937 22 Si 1.113 2.887 23 H -0.273 1.273 24 H -0.288 1.288 25 H -0.291 1.291 26 C 0.148 3.852 27 C 0.037 3.963 28 C 0.118 3.882 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.031 0.969 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.022 0.978 48 H 0.002 0.998 49 H 0.253 0.747 50 H 0.011 0.989 51 H 0.040 0.960 52 H 0.036 0.964 53 H 0.091 0.909 54 H 0.086 0.914 55 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.196 -21.504 -2.132 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.269 5.269 5 C -0.126 4.126 6 C -0.091 4.091 7 C 0.302 3.698 8 O -0.444 6.444 9 N -0.349 5.349 10 C 0.001 3.999 11 C -0.081 4.081 12 N -0.253 5.253 13 C -0.018 4.018 14 H 0.062 0.938 15 C -0.146 4.146 16 C 0.021 3.979 17 N -0.352 5.352 18 C -0.479 4.479 19 H 0.079 0.921 20 C -0.272 4.272 21 N -0.579 5.579 22 Si 0.938 3.062 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.218 1.218 26 C 0.023 3.977 27 C -0.091 4.091 28 C -0.005 4.005 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.049 0.951 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.040 0.960 48 H 0.019 0.981 49 H 0.063 0.937 50 H 0.029 0.971 51 H 0.058 0.942 52 H 0.054 0.946 53 H 0.109 0.891 54 H 0.104 0.896 55 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.687 -20.990 -3.407 27.659 hybrid contribution -0.937 -0.474 2.343 2.567 sum -18.625 -21.463 -1.064 28.438 Atomic orbital electron populations 1.21707 0.94355 1.02226 1.02229 1.21514 0.96282 0.95872 1.02127 1.22265 0.85020 0.98075 1.01721 1.61635 1.08654 1.20432 1.36205 1.22486 1.01211 1.00130 0.88773 1.22074 0.91014 0.91695 1.04299 1.21032 0.90325 0.82946 0.75476 1.90646 1.72219 1.29367 1.52193 1.48308 1.08731 1.07323 1.70496 1.21588 0.79430 0.99229 0.99697 1.22453 1.00012 0.87853 0.97760 1.61945 1.02511 1.04218 1.56620 1.22346 0.93977 0.90811 0.94645 0.93817 1.22736 0.94740 0.95078 1.02075 1.21415 0.89662 0.90868 0.95937 1.44817 1.02165 1.05360 1.82811 1.19963 1.01719 0.85242 1.40989 0.92116 1.27027 0.95544 1.04353 1.00249 1.70858 1.43366 1.33025 1.10603 0.82915 0.76143 0.72741 0.74407 1.19762 1.21415 1.21807 1.21325 0.89779 0.88749 0.97861 1.22552 0.88210 1.01028 0.97359 1.21984 0.96742 0.80528 1.01206 0.92211 0.92402 0.92133 0.92175 0.92318 0.93976 0.89588 0.95410 0.90634 0.92027 0.90171 0.85586 0.90316 0.89525 0.88723 0.95096 0.90216 0.89444 0.95991 0.98056 0.93674 0.97094 0.94220 0.94596 0.89107 0.89564 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 71.98 0.71 -0.52 16 2 C -0.12 -1.39 5.87 30.60 0.18 -1.21 16 3 C 0.06 0.66 4.96 86.31 0.43 1.09 16 4 N -0.54 -9.22 4.50 -927.03 -4.17 -13.39 16 5 C 0.02 0.39 9.01 127.69 1.15 1.54 16 6 C 0.04 0.57 3.81 85.56 0.33 0.90 16 7 C 0.51 10.94 7.43 87.66 0.65 11.59 16 8 O -0.57 -16.54 13.77 -3.03 -0.04 -16.58 16 9 N -0.61 -11.85 3.01 -818.00 -2.46 -14.31 16 10 C 0.12 2.59 6.59 86.35 0.57 3.15 16 11 C 0.05 1.06 5.46 86.38 0.47 1.53 16 12 N -0.53 -13.33 4.45 -863.16 -3.84 -17.18 16 13 C 0.09 2.92 2.64 46.11 0.12 3.04 16 14 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 15 C -0.11 -3.70 5.31 31.99 0.17 -3.53 16 16 C 0.15 6.94 5.34 86.85 0.46 7.41 16 17 N -0.62 -32.03 3.33 -691.95 -2.30 -34.33 16 18 C -0.35 -20.14 9.96 84.03 0.84 -19.30 16 19 H 0.06 3.47 8.02 -2.91 -0.02 3.45 16 20 C -0.08 -4.36 4.95 84.86 0.42 -3.94 16 21 N -0.94 -57.94 12.88 21.65 0.28 -57.66 16 22 Si 1.11 51.61 30.03 68.60 2.06 53.67 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 26 C 0.15 6.00 5.74 86.73 0.50 6.50 16 27 C 0.04 0.75 5.46 86.37 0.47 1.22 16 28 C 0.12 1.77 6.50 86.34 0.56 2.33 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.45 8.14 -2.38 -0.02 0.44 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.72 6.47 -2.39 -0.02 0.70 16 34 H 0.04 0.44 8.12 -2.38 -0.02 0.42 16 35 H 0.09 0.82 7.93 -2.39 -0.02 0.80 16 36 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.07 1.22 6.30 -2.39 -0.02 1.20 16 38 H 0.06 1.45 5.88 -2.39 -0.01 1.43 16 39 H 0.08 0.90 7.64 -2.39 -0.02 0.88 16 40 H 0.13 1.25 7.79 -2.39 -0.02 1.23 16 41 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.09 1.97 7.07 -2.39 -0.02 1.96 16 43 H 0.09 2.03 6.75 -2.39 -0.02 2.02 16 44 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 46 H 0.09 2.52 7.93 -2.39 -0.02 2.50 16 47 H 0.02 1.15 7.83 -2.39 -0.02 1.13 16 48 H 0.00 0.09 7.03 -2.38 -0.02 0.07 16 49 H 0.25 15.98 6.46 -92.71 -0.60 15.38 16 50 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.04 1.60 7.78 -2.39 -0.02 1.58 16 52 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 53 H 0.09 1.92 6.88 -2.39 -0.02 1.90 16 54 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 55 H 0.12 1.02 6.02 -2.39 -0.01 1.00 16 Total: -1.00 -73.41 411.84 -1.44 -74.85 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.01 Total: 13.11 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 8.03 Total: 11.81 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -12.50 Total: -136.87 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.04 Total: -16.58 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.06 Total: 53.67 kcal Total: -73.41 -1.44 -74.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324559997.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.600 kcal (2) G-P(sol) polarization free energy of solvation -73.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds