Wall clock time and date at job start Tue Mar 31 2020 22:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21644 * 120.00391 * 359.97438 * 16 15 14 18 18 C 1.46981 * 119.99777 * 179.97438 * 16 15 14 19 19 S 1.77059 * 127.98675 * 359.68173 * 18 16 15 20 20 N 1.56291 * 96.44526 * 179.90934 * 19 18 16 21 21 C 1.29583 * 110.42791 * 0.35674 * 20 19 18 22 22 Cl 1.73603 * 121.05424 * 179.74256 * 21 20 19 23 23 C 1.37830 * 117.89075 * 359.72458 * 21 20 19 24 24 Cl 1.73601 * 124.39683 * 180.02562 * 23 21 20 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 28 28 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 29 29 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 30 30 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 31 31 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 32 32 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 8 1.2276 -4.2999 2.1631 14 6 1.1806 -4.7488 -0.6288 15 7 0.7341 -4.3252 -1.9582 16 6 -0.0558 -5.1331 -2.6929 17 8 -0.3976 -6.2143 -2.2524 18 6 -0.5043 -4.7079 -4.0265 19 16 -0.1446 -3.1903 -4.8646 20 7 -0.9546 -3.5103 -6.1624 21 6 -1.5146 -4.6752 -6.0703 22 17 -2.4901 -5.3045 -7.3611 23 6 -1.3107 -5.3991 -4.9152 24 17 -1.9777 -6.9733 -4.6138 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0068 27 1 3.0424 -4.9392 1.4103 28 1 2.9715 -3.2265 1.8893 29 1 1.3828 -4.5515 3.0838 30 1 1.7556 -5.6709 -0.7154 31 1 0.3131 -4.9201 0.0085 32 1 1.0063 -3.4630 -2.3094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331725262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:03 Heat of formation + Delta-G solvation = -34.337427 kcal Electronic energy + Delta-G solvation = -22122.574824 eV Core-core repulsion = 18297.705958 eV Total energy + Delta-G solvation = -3824.868866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 339.000 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.08765 -39.16774 -37.20637 -36.82703 -36.67283 -35.00607 -33.64196 -32.00542 -31.27005 -28.53324 -26.72640 -24.98383 -23.72175 -22.12037 -20.46141 -20.01967 -18.97451 -17.86923 -17.34407 -16.67448 -15.96343 -15.91375 -15.79475 -15.00415 -14.64957 -14.45869 -14.16036 -13.66451 -13.48330 -13.12921 -12.94746 -12.43538 -12.31449 -12.10165 -11.97675 -11.54203 -11.47893 -11.39496 -10.96109 -10.90012 -10.86033 -10.66954 -10.17134 -10.01928 -9.84648 -9.78874 -9.43473 -9.05927 -8.92791 -8.81338 -7.12594 -5.88627 -3.19866 -0.16570 0.55213 0.73465 1.46615 1.96543 2.27557 3.04569 3.18453 3.34443 3.40528 3.42752 4.16882 4.46211 4.63678 4.85621 4.92577 5.31327 5.41106 5.47508 5.62877 5.79817 5.92778 5.95901 6.22024 6.42318 6.61530 6.65793 7.56174 7.60552 8.14101 8.21903 8.28043 9.40640 9.94140 10.30704 11.32639 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.003604 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.335876 B = 7767.167397 C = 9475.931680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.164 3.836 11 H 0.068 0.932 12 C 0.060 3.940 13 O -0.561 6.561 14 C 0.119 3.881 15 N -0.701 5.701 16 C 0.590 3.410 17 O -0.512 6.512 18 C -0.257 4.257 19 S 0.552 5.448 20 N -0.519 5.519 21 C 0.139 3.861 22 Cl 0.009 6.991 23 C -0.038 4.038 24 Cl 0.024 6.976 25 H 0.257 0.743 26 H 0.389 0.611 27 H 0.028 0.972 28 H 0.050 0.950 29 H 0.365 0.635 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.625 -11.095 -9.328 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.383 4.383 8 H 0.089 0.911 9 N -0.356 5.356 10 C 0.053 3.947 11 H 0.086 0.914 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.004 4.004 15 N -0.353 5.353 16 C 0.372 3.628 17 O -0.389 6.389 18 C -0.391 4.391 19 S 0.705 5.295 20 N -0.353 5.353 21 C -0.060 4.060 22 Cl 0.036 6.964 23 C -0.083 4.083 24 Cl 0.053 6.947 25 H 0.067 0.933 26 H 0.224 0.776 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.210 0.790 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.830 -9.789 -10.190 14.155 hybrid contribution -0.406 -0.471 0.439 0.761 sum 0.424 -10.260 -9.751 14.161 Atomic orbital electron populations 1.69670 1.05096 1.25868 1.56496 1.24737 0.95425 0.97631 1.02382 0.86251 0.78695 0.83942 0.77581 1.21570 1.21780 1.20798 1.19206 0.90954 0.83951 1.44144 0.91094 1.42401 1.06079 0.99060 1.88097 1.20618 0.95026 0.86926 0.92107 0.91434 1.23015 0.86558 0.97363 0.95247 1.86563 1.32113 1.91684 1.26023 1.21682 0.99965 0.97237 0.81563 1.45834 1.49892 1.21109 1.18488 1.16412 0.79555 0.84889 0.81928 1.90854 1.56035 1.21343 1.70653 1.26853 1.06999 1.03260 1.02028 1.82361 1.38437 1.11585 0.97165 1.71560 1.17496 1.18961 1.27290 1.20912 1.01566 0.91163 0.92318 1.98420 1.66731 1.84317 1.46909 1.20855 1.01171 0.93051 0.93264 1.98418 1.82612 1.18413 1.95256 0.93324 0.77647 0.95436 0.93189 0.79042 0.91421 0.89939 0.75605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.92 13.06 55.49 0.72 -25.19 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.90 20.72 29.55 -169.99 -5.02 15.69 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.25 -6.20 9.93 -15.06 -0.15 -6.35 16 8 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 9 N -0.71 -15.80 4.51 -53.42 -0.24 -16.04 16 10 C 0.16 2.84 2.84 -67.93 -0.19 2.65 16 11 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 12 C 0.06 0.95 6.86 37.16 0.25 1.20 16 13 O -0.56 -9.30 12.64 -35.23 -0.45 -9.75 16 14 C 0.12 1.92 5.12 -4.04 -0.02 1.89 16 15 N -0.70 -10.95 5.38 -61.52 -0.33 -11.28 16 16 C 0.59 9.45 7.80 -12.72 -0.10 9.35 16 17 O -0.51 -9.37 15.67 5.24 0.08 -9.29 16 18 C -0.26 -3.65 6.76 -35.95 -0.24 -3.89 16 19 S 0.55 6.81 22.81 -107.50 -2.45 4.36 16 20 N -0.52 -6.96 11.28 24.49 0.28 -6.69 16 21 C 0.14 1.85 7.16 -18.65 -0.13 1.71 16 22 Cl 0.01 0.10 28.63 -51.86 -1.48 -1.38 16 23 C -0.04 -0.53 6.52 -39.64 -0.26 -0.79 16 24 Cl 0.02 0.33 27.26 -51.86 -1.41 -1.09 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.39 9.62 7.80 -40.82 -0.32 9.30 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.36 4.30 9.12 45.56 0.42 4.72 16 30 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 31 H 0.08 1.50 7.39 -51.93 -0.38 1.12 16 32 H 0.41 6.24 7.51 -40.82 -0.31 5.93 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -29.92 331.06 -8.08 -38.00 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -1.83 Total: 12.11 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.94 Total: 5.56 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.43 Total: -59.20 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.36 Total: -19.03 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -2.45 Total: 4.36 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -2.90 Total: -2.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.92 -8.08 -38.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331725262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.665 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds