Wall clock time and date at job start Tue Mar 31 2020 22:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21644 * 120.00391 * 359.97438 * 16 15 14 18 18 C 1.46981 * 119.99777 * 179.97438 * 16 15 14 19 19 S 1.77059 * 127.98675 * 359.68173 * 18 16 15 20 20 N 1.56291 * 96.44526 * 179.90934 * 19 18 16 21 21 C 1.29583 * 110.42791 * 0.35674 * 20 19 18 22 22 Cl 1.73603 * 121.05424 * 179.74256 * 21 20 19 23 23 C 1.37830 * 117.89075 * 359.72458 * 21 20 19 24 24 Cl 1.73601 * 124.39683 * 180.02562 * 23 21 20 25 25 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 28 28 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 29 29 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 30 30 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 31 31 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 32 32 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 8 1.2276 -4.2999 2.1631 14 6 1.1806 -4.7488 -0.6288 15 7 0.7341 -4.3252 -1.9582 16 6 -0.0558 -5.1331 -2.6929 17 8 -0.3976 -6.2143 -2.2524 18 6 -0.5043 -4.7079 -4.0265 19 16 -0.1446 -3.1903 -4.8646 20 7 -0.9546 -3.5103 -6.1624 21 6 -1.5146 -4.6752 -6.0703 22 17 -2.4901 -5.3045 -7.3611 23 6 -1.3107 -5.3991 -4.9152 24 17 -1.9777 -6.9733 -4.6138 25 1 -0.4850 0.8401 0.0004 26 1 0.3555 -2.3880 -0.0068 27 1 3.0424 -4.9392 1.4103 28 1 2.9715 -3.2265 1.8893 29 1 1.3828 -4.5515 3.0838 30 1 1.7556 -5.6709 -0.7154 31 1 0.3131 -4.9201 0.0085 32 1 1.0063 -3.4630 -2.3094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331725262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:02 Heat of formation + Delta-G solvation = -57.771645 kcal Electronic energy + Delta-G solvation = -22123.591008 eV Core-core repulsion = 18297.705958 eV Total energy + Delta-G solvation = -3825.885050 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 339.000 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.22849 -40.37004 -38.56232 -37.86433 -37.68994 -36.37147 -35.23914 -33.37904 -32.67884 -30.13355 -27.91493 -26.19757 -25.53617 -23.27696 -21.75507 -21.29624 -20.10380 -19.40184 -18.64708 -18.09612 -17.26564 -17.06378 -16.98285 -16.42214 -16.04249 -15.64319 -15.53023 -15.21257 -14.88806 -14.56226 -14.34777 -13.67402 -13.50027 -13.34973 -13.01679 -12.95012 -12.72772 -12.59132 -12.51426 -12.37939 -12.21369 -11.92773 -11.84626 -11.68989 -11.31618 -10.91941 -10.90594 -10.66172 -10.11391 -9.92391 -8.95747 -7.85049 -5.13927 -1.26176 -0.48026 -0.28580 0.39704 0.89846 1.23031 1.54612 1.56291 1.62999 1.80088 1.97355 2.62354 3.08092 3.47589 3.55065 3.66615 3.75107 3.94870 4.05461 4.48481 4.57343 4.61904 4.67574 4.88990 5.04825 5.27016 5.35306 5.62065 6.33743 6.34336 6.95633 7.11867 7.42965 8.14450 8.39538 9.37457 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.003604 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.335876 B = 7767.167397 C = 9475.931680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.065 4.065 3 Si 0.961 3.039 4 H -0.285 1.285 5 H -0.307 1.307 6 H -0.272 1.272 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.724 5.724 10 C 0.159 3.841 11 H 0.085 0.915 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.129 3.871 15 N -0.699 5.699 16 C 0.592 3.408 17 O -0.538 6.538 18 C -0.276 4.276 19 S 0.597 5.403 20 N -0.528 5.528 21 C 0.134 3.866 22 Cl 0.023 6.977 23 C -0.040 4.040 24 Cl 0.024 6.976 25 H 0.248 0.752 26 H 0.373 0.627 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.385 0.615 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -11.547 -9.774 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.258 4.258 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.235 1.235 6 H -0.197 1.197 7 C -0.367 4.367 8 H 0.101 0.899 9 N -0.364 5.364 10 C 0.050 3.950 11 H 0.103 0.897 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.350 5.350 16 C 0.376 3.624 17 O -0.417 6.417 18 C -0.410 4.410 19 S 0.749 5.251 20 N -0.364 5.364 21 C -0.064 4.064 22 Cl 0.050 6.950 23 C -0.086 4.086 24 Cl 0.053 6.947 25 H 0.057 0.943 26 H 0.205 0.795 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.233 0.767 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.336 -10.278 -10.625 14.966 hybrid contribution -0.821 -0.417 0.575 1.085 sum 1.515 -10.695 -10.050 14.754 Atomic orbital electron populations 1.69821 1.06536 1.25696 1.59402 1.25380 0.95988 1.00472 1.03943 0.85329 0.77666 0.80412 0.77418 1.21204 1.23472 1.19687 1.19595 0.91533 0.84705 1.40824 0.89929 1.42514 1.05460 1.00216 1.88203 1.20901 0.95274 0.85212 0.93618 0.89710 1.22879 0.86563 0.98645 0.93611 1.86518 1.32883 1.91851 1.27824 1.21552 0.99037 0.97616 0.81245 1.45797 1.49823 1.21098 1.18310 1.16548 0.79041 0.84464 0.82364 1.90834 1.56961 1.22409 1.71466 1.26717 1.08012 1.04648 1.01633 1.82221 1.37081 1.09835 0.95924 1.71518 1.17798 1.19089 1.27954 1.20908 1.01835 0.91057 0.92624 1.98423 1.66289 1.84136 1.46146 1.20950 1.01058 0.93147 0.93422 1.98415 1.82572 1.18402 1.95274 0.94327 0.79461 0.91524 0.94554 0.76697 0.89251 0.92236 0.75402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.77 13.06 21.65 0.28 -54.49 16 2 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 3 Si 0.96 42.38 29.55 68.60 2.03 44.40 16 4 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.31 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.23 -11.30 9.93 84.04 0.83 -10.46 16 8 H 0.08 3.73 7.83 -2.91 -0.02 3.70 16 9 N -0.72 -31.39 4.51 -322.93 -1.46 -32.85 16 10 C 0.16 5.19 2.84 44.99 0.13 5.32 16 11 H 0.09 2.50 8.08 -2.39 -0.02 2.48 16 12 C 0.06 1.87 6.86 71.98 0.49 2.36 16 13 O -0.58 -18.48 12.64 -148.98 -1.88 -20.36 16 14 C 0.13 3.96 5.12 86.38 0.44 4.40 16 15 N -0.70 -21.11 5.38 -466.79 -2.51 -23.63 16 16 C 0.59 18.57 7.80 86.53 0.67 19.24 16 17 O -0.54 -19.42 15.67 -4.17 -0.07 -19.48 16 18 C -0.28 -7.61 6.76 24.62 0.17 -7.44 16 19 S 0.60 13.96 22.81 -56.49 -1.29 12.68 16 20 N -0.53 -13.47 11.28 -76.42 -0.86 -14.33 16 21 C 0.13 3.40 7.16 84.93 0.61 4.00 16 22 Cl 0.02 0.50 28.63 -2.72 -0.08 0.42 16 23 C -0.04 -1.09 6.52 22.23 0.14 -0.94 16 24 Cl 0.02 0.65 27.26 -2.72 -0.07 0.57 16 25 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 26 H 0.37 18.53 7.80 -92.71 -0.72 17.81 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.39 8.39 9.12 -74.06 -0.68 7.71 16 30 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.06 2.14 7.39 -2.39 -0.02 2.12 16 32 H 0.41 12.10 7.51 -92.71 -0.70 11.40 16 Total: -1.00 -63.04 331.06 -2.81 -65.85 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.86 Total: 27.63 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 3.96 Total: 13.58 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -4.55 Total: -125.29 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.95 Total: -39.84 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 13.96 SS G_CDS: -1.29 Total: 12.68 kcal Atomic # 17 Polarization: 1.14 SS G_CDS: -0.15 Total: 0.99 kcal Total: -63.04 -2.81 -65.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331725262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.082 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds