Wall clock time and date at job start Tue Mar 31 2020 22:41:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86801 * 120.00135 * 2 1
4 4 H 1.48502 * 109.47210 * 240.00269 * 3 2 1
5 5 H 1.48504 * 109.46799 * 0.02562 * 3 2 1
6 6 H 1.48495 * 109.46768 * 119.99991 * 3 2 1
7 7 C 1.38808 * 119.99682 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00145 * 180.02562 * 7 2 1
9 9 N 1.36942 * 120.00191 * 359.97438 * 7 2 1
10 10 C 1.46497 * 119.99838 * 180.02562 * 9 7 2
11 11 H 1.09004 * 109.47032 * 35.00745 * 10 9 7
12 12 C 1.52996 * 109.47515 * 275.00376 * 10 9 7
13 13 O 1.42900 * 109.47222 * 294.99888 * 12 10 9
14 14 C 1.52998 * 109.46957 * 155.00211 * 10 9 7
15 15 N 1.46497 * 109.47492 * 305.00378 * 14 10 9
16 16 C 1.34775 * 120.00680 * 180.02562 * 15 14 10
17 17 O 1.21649 * 119.99353 * 359.97438 * 16 15 14
18 18 C 1.46980 * 120.00258 * 179.97438 * 16 15 14
19 19 S 1.77049 * 127.98751 * 0.02562 * 18 16 15
20 20 N 1.56289 * 96.44648 * 179.97438 * 19 18 16
21 21 C 1.29584 * 110.42917 * 0.02562 * 20 19 18
22 22 Cl 1.73601 * 121.05486 * 179.72906 * 21 20 19
23 23 C 1.37833 * 117.89058 * 359.97438 * 21 20 19
24 24 Cl 1.73599 * 124.39831 * 180.02562 * 23 21 20
25 25 H 0.97003 * 119.99465 * 359.97438 * 1 2 3
26 26 H 0.96999 * 119.99940 * 0.02562 * 9 7 2
27 27 H 1.09001 * 109.46935 * 55.00365 * 12 10 9
28 28 H 1.09004 * 109.47492 * 175.00259 * 12 10 9
29 29 H 0.96695 * 114.00638 * 179.97438 * 13 12 10
30 30 H 1.09006 * 109.47492 * 184.99966 * 14 10 9
31 31 H 1.09007 * 109.47417 * 65.00108 * 14 10 9
32 32 H 0.97008 * 120.00011 * 359.97438 * 15 14 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1041 1.6964 -1.2125
5 1 1.2853 2.7464 0.0006
6 1 3.1040 1.6963 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2022 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 2.0580 -3.6568 -0.0005
11 1 2.9687 -3.5506 0.5890
12 6 2.4220 -4.0356 -1.4375
13 8 1.2279 -4.2886 -2.1805
14 6 1.1808 -4.7521 0.6090
15 7 0.7340 -4.3355 1.9406
16 6 -0.0550 -5.1477 2.6715
17 8 -0.3966 -6.2266 2.2253
18 6 -0.5027 -4.7298 4.0076
19 16 -0.1373 -3.2197 4.8566
20 7 -0.9522 -3.5440 6.1502
21 6 -1.5114 -4.7089 6.0524
22 17 -2.4806 -5.3482 7.3430
23 6 -1.3081 -5.4264 4.8932
24 17 -1.9751 -6.9989 4.5834
25 1 -0.4849 0.8401 0.0004
26 1 0.3555 -2.3881 -0.0005
27 1 2.9718 -3.2165 -1.9010
28 1 3.0425 -4.9318 -1.4310
29 1 1.3830 -4.5346 -3.1027
30 1 1.7557 -5.6746 0.6908
31 1 0.3132 -4.9201 -0.0292
32 1 1.0067 -3.4753 2.2966
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001331725296.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:41:06
Heat of formation + Delta-G solvation = -34.274120 kcal
Electronic energy + Delta-G solvation = -22121.177153 eV
Core-core repulsion = 18296.311033 eV
Total energy + Delta-G solvation = -3824.866120 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 339.000 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-40.08721 -39.16693 -37.20539 -36.82719 -36.67308 -35.00501 -33.63933 -32.00468
-31.26832 -28.53071 -26.72602 -24.98330 -23.71939 -22.12014 -20.46048 -20.01877
-18.97423 -17.86840 -17.34333 -16.67311 -15.96142 -15.91267 -15.79704 -15.00034
-14.65169 -14.45816 -14.16181 -13.66276 -13.48358 -13.12766 -12.94228 -12.43663
-12.31332 -12.10138 -11.97651 -11.54143 -11.47838 -11.39566 -10.94959 -10.89383
-10.86070 -10.67235 -10.19748 -10.01853 -9.84167 -9.78871 -9.43302 -9.05221
-8.92790 -8.81226 -7.12440 -5.88290 -3.19671 -0.16587 0.55192 0.73472
1.46547 1.96547 2.27535 3.04612 3.18481 3.35000 3.40460 3.42168
4.16870 4.46423 4.63652 4.85726 4.92615 5.31364 5.41056 5.47856
5.62853 5.79882 5.92849 5.96010 6.22094 6.42396 6.61678 6.65882
7.55787 7.60600 8.14256 8.21977 8.28448 9.40863 9.94355 10.30890
11.32880
Molecular weight = 339.00amu
Principal moments of inertia in cm(-1)
A = 0.013397 B = 0.003599 C = 0.002952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2089.513008 B = 7777.327087 C = 9482.519878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C -0.004 4.004
3 Si 0.905 3.095
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.285 1.285
7 C -0.252 4.252
8 H 0.071 0.929
9 N -0.714 5.714
10 C 0.164 3.836
11 H 0.068 0.932
12 C 0.060 3.940
13 O -0.561 6.561
14 C 0.119 3.881
15 N -0.701 5.701
16 C 0.589 3.411
17 O -0.512 6.512
18 C -0.257 4.257
19 S 0.552 5.448
20 N -0.519 5.519
21 C 0.139 3.861
22 Cl 0.009 6.991
23 C -0.038 4.038
24 Cl 0.024 6.976
25 H 0.257 0.743
26 H 0.389 0.611
27 H 0.050 0.950
28 H 0.027 0.973
29 H 0.365 0.635
30 H 0.068 0.932
31 H 0.082 0.918
32 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.628 -11.130 9.314 14.527
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.201 4.201
3 Si 0.736 3.264
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.211 1.211
7 C -0.383 4.383
8 H 0.089 0.911
9 N -0.356 5.356
10 C 0.053 3.947
11 H 0.086 0.914
12 C -0.022 4.022
13 O -0.364 6.364
14 C -0.004 4.004
15 N -0.353 5.353
16 C 0.372 3.628
17 O -0.389 6.389
18 C -0.391 4.391
19 S 0.705 5.295
20 N -0.353 5.353
21 C -0.060 4.060
22 Cl 0.036 6.964
23 C -0.083 4.083
24 Cl 0.053 6.947
25 H 0.067 0.933
26 H 0.224 0.776
27 H 0.068 0.932
28 H 0.046 0.954
29 H 0.210 0.790
30 H 0.086 0.914
31 H 0.101 0.899
32 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges 0.828 -9.827 10.193 14.182
hybrid contribution -0.400 -0.469 -0.465 0.772
sum 0.428 -10.296 9.727 14.171
Atomic orbital electron populations
1.69667 1.05088 1.25987 1.56407 1.24738 0.95427 0.97626 1.02350
0.86323 0.78596 0.83641 0.77876 1.21307 1.21676 1.21131 1.19165
0.90923 0.83967 1.44278 0.91150 1.42394 1.06073 0.99050 1.88106
1.20615 0.95027 0.86924 0.92108 0.91437 1.23019 0.86560 0.97382
0.95228 1.86559 1.32123 1.91917 1.25785 1.21680 0.99963 0.97281
0.81518 1.45834 1.49913 1.21190 1.18381 1.16414 0.79561 0.84858
0.81958 1.90855 1.56024 1.21532 1.70481 1.26851 1.06984 1.03313
1.01988 1.82353 1.38054 1.12047 0.97091 1.71559 1.17433 1.18807
1.27513 1.20913 1.01660 0.91126 0.92257 1.98420 1.67183 1.83866
1.46906 1.20856 1.01226 0.93067 0.93196 1.98418 1.82614 1.18567
1.95097 0.93271 0.77644 0.93196 0.95439 0.79042 0.91424 0.89939
0.75604
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 39.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -25.93 13.06 55.49 0.72 -25.21 16
2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16
3 Si 0.90 20.72 29.55 -169.99 -5.02 15.70 16
4 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16
5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
7 C -0.25 -6.23 9.93 -15.06 -0.15 -6.38 16
8 H 0.07 1.67 7.83 -52.48 -0.41 1.25 16
9 N -0.71 -15.81 4.51 -53.43 -0.24 -16.05 16
10 C 0.16 2.85 2.84 -67.93 -0.19 2.65 16
11 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16
12 C 0.06 0.95 6.86 37.16 0.25 1.20 16
13 O -0.56 -9.31 12.64 -35.23 -0.45 -9.76 16
14 C 0.12 1.92 5.12 -4.04 -0.02 1.90 16
15 N -0.70 -10.95 5.38 -61.52 -0.33 -11.28 16
16 C 0.59 9.45 7.80 -12.72 -0.10 9.35 16
17 O -0.51 -9.37 15.67 5.23 0.08 -9.29 16
18 C -0.26 -3.65 6.76 -35.95 -0.24 -3.89 16
19 S 0.55 6.79 22.81 -107.50 -2.45 4.34 16
20 N -0.52 -6.96 11.28 24.49 0.28 -6.68 16
21 C 0.14 1.85 7.16 -18.65 -0.13 1.71 16
22 Cl 0.01 0.10 28.63 -51.86 -1.48 -1.38 16
23 C -0.04 -0.54 6.52 -39.64 -0.26 -0.79 16
24 Cl 0.02 0.33 27.26 -51.86 -1.41 -1.09 16
25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
26 H 0.39 9.62 7.80 -40.82 -0.32 9.31 16
27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
28 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16
29 H 0.36 4.31 9.12 45.56 0.42 4.73 16
30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
31 H 0.08 1.51 7.39 -51.93 -0.38 1.12 16
32 H 0.41 6.24 7.51 -40.82 -0.31 5.93 16
LS Contribution 331.06 15.07 4.99 4.99
Total: -1.00 -29.91 331.06 -8.08 -37.99
By element:
Atomic # 1 Polarization: 13.99 SS G_CDS: -1.83 Total: 12.17 kcal
Atomic # 6 Polarization: 6.49 SS G_CDS: -0.94 Total: 5.55 kcal
Atomic # 7 Polarization: -59.65 SS G_CDS: 0.43 Total: -59.22 kcal
Atomic # 8 Polarization: -18.69 SS G_CDS: -0.36 Total: -19.05 kcal
Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal
Atomic # 16 Polarization: 6.79 SS G_CDS: -2.45 Total: 4.34 kcal
Atomic # 17 Polarization: 0.43 SS G_CDS: -2.90 Total: -2.47 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -29.91 -8.08 -37.99 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331725296.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.719 kcal
(2) G-P(sol) polarization free energy of solvation -29.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.190 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.274 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds