Wall clock time and date at job start Tue Mar 31 2020 22:41:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31630 * 1
3 3 Si 1.86801 * 120.00135 * 2 1
4 4 H 1.48502 * 109.47210 * 240.00269 * 3 2 1
5 5 H 1.48504 * 109.46799 * 0.02562 * 3 2 1
6 6 H 1.48495 * 109.46768 * 119.99991 * 3 2 1
7 7 C 1.38808 * 119.99682 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00145 * 180.02562 * 7 2 1
9 9 N 1.36942 * 120.00191 * 359.97438 * 7 2 1
10 10 C 1.46497 * 119.99838 * 180.02562 * 9 7 2
11 11 H 1.09004 * 109.47032 * 35.00745 * 10 9 7
12 12 C 1.52996 * 109.47515 * 275.00376 * 10 9 7
13 13 O 1.42900 * 109.47222 * 294.99888 * 12 10 9
14 14 C 1.52998 * 109.46957 * 155.00211 * 10 9 7
15 15 N 1.46497 * 109.47492 * 305.00378 * 14 10 9
16 16 C 1.34775 * 120.00680 * 180.02562 * 15 14 10
17 17 O 1.21649 * 119.99353 * 359.97438 * 16 15 14
18 18 C 1.46980 * 120.00258 * 179.97438 * 16 15 14
19 19 S 1.77049 * 127.98751 * 0.02562 * 18 16 15
20 20 N 1.56289 * 96.44648 * 179.97438 * 19 18 16
21 21 C 1.29584 * 110.42917 * 0.02562 * 20 19 18
22 22 Cl 1.73601 * 121.05486 * 179.72906 * 21 20 19
23 23 C 1.37833 * 117.89058 * 359.97438 * 21 20 19
24 24 Cl 1.73599 * 124.39831 * 180.02562 * 23 21 20
25 25 H 0.97003 * 119.99465 * 359.97438 * 1 2 3
26 26 H 0.96999 * 119.99940 * 0.02562 * 9 7 2
27 27 H 1.09001 * 109.46935 * 55.00365 * 12 10 9
28 28 H 1.09004 * 109.47492 * 175.00259 * 12 10 9
29 29 H 0.96695 * 114.00638 * 179.97438 * 13 12 10
30 30 H 1.09006 * 109.47492 * 184.99966 * 14 10 9
31 31 H 1.09007 * 109.47417 * 65.00108 * 14 10 9
32 32 H 0.97008 * 120.00011 * 359.97438 * 15 14 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1041 1.6964 -1.2125
5 1 1.2853 2.7464 0.0006
6 1 3.1040 1.6963 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2022 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 2.0580 -3.6568 -0.0005
11 1 2.9687 -3.5506 0.5890
12 6 2.4220 -4.0356 -1.4375
13 8 1.2279 -4.2886 -2.1805
14 6 1.1808 -4.7521 0.6090
15 7 0.7340 -4.3355 1.9406
16 6 -0.0550 -5.1477 2.6715
17 8 -0.3966 -6.2266 2.2253
18 6 -0.5027 -4.7298 4.0076
19 16 -0.1373 -3.2197 4.8566
20 7 -0.9522 -3.5440 6.1502
21 6 -1.5114 -4.7089 6.0524
22 17 -2.4806 -5.3482 7.3430
23 6 -1.3081 -5.4264 4.8932
24 17 -1.9751 -6.9989 4.5834
25 1 -0.4849 0.8401 0.0004
26 1 0.3555 -2.3881 -0.0005
27 1 2.9718 -3.2165 -1.9010
28 1 3.0425 -4.9318 -1.4310
29 1 1.3830 -4.5346 -3.1027
30 1 1.7557 -5.6746 0.6908
31 1 0.3132 -4.9201 -0.0292
32 1 1.0067 -3.4753 2.2966
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001331725296.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:41:05
Heat of formation + Delta-G solvation = -57.703409 kcal
Electronic energy + Delta-G solvation = -22122.193123 eV
Core-core repulsion = 18296.311033 eV
Total energy + Delta-G solvation = -3825.882091 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 339.000 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.22727 -40.36898 -38.56196 -37.86375 -37.68931 -36.37135 -35.23654 -33.37766
-32.67751 -30.13139 -27.91439 -26.19720 -25.53358 -23.27623 -21.75399 -21.29573
-20.10273 -19.40003 -18.64599 -18.09624 -17.26394 -17.06070 -16.98583 -16.41870
-16.04443 -15.64496 -15.52919 -15.20751 -14.88833 -14.55995 -14.34811 -13.67242
-13.49925 -13.34891 -13.01476 -12.94536 -12.69666 -12.59558 -12.51436 -12.37954
-12.24018 -11.92818 -11.86402 -11.68457 -11.31438 -10.90877 -10.90455 -10.66171
-10.11309 -9.92245 -8.95589 -7.84733 -5.13768 -1.26103 -0.47911 -0.28447
0.39716 0.89938 1.23118 1.55567 1.56472 1.62233 1.80156 1.97399
2.62616 3.08161 3.47655 3.55108 3.66539 3.75167 3.95022 4.05510
4.48479 4.57414 4.61904 4.67518 4.88990 5.04749 5.27056 5.35358
5.61850 6.33911 6.34401 6.95710 7.11814 7.43098 8.14653 8.39702
9.37529
Molecular weight = 339.00amu
Principal moments of inertia in cm(-1)
A = 0.013397 B = 0.003599 C = 0.002952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2089.513008 B = 7777.327087 C = 9482.519878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.964 5.964
2 C -0.065 4.065
3 Si 0.962 3.038
4 H -0.285 1.285
5 H -0.305 1.305
6 H -0.273 1.273
7 C -0.236 4.236
8 H 0.083 0.917
9 N -0.724 5.724
10 C 0.159 3.841
11 H 0.085 0.915
12 C 0.064 3.936
13 O -0.584 6.584
14 C 0.129 3.871
15 N -0.699 5.699
16 C 0.592 3.408
17 O -0.538 6.538
18 C -0.276 4.276
19 S 0.597 5.403
20 N -0.529 5.529
21 C 0.134 3.866
22 Cl 0.023 6.977
23 C -0.040 4.040
24 Cl 0.024 6.976
25 H 0.248 0.752
26 H 0.373 0.627
27 H 0.036 0.964
28 H 0.067 0.933
29 H 0.385 0.615
30 H 0.089 0.911
31 H 0.059 0.941
32 H 0.409 0.591
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.075 -11.567 9.780 15.289
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.614 5.614
2 C -0.258 4.258
3 Si 0.792 3.208
4 H -0.212 1.212
5 H -0.232 1.232
6 H -0.199 1.199
7 C -0.368 4.368
8 H 0.101 0.899
9 N -0.364 5.364
10 C 0.050 3.950
11 H 0.103 0.897
12 C -0.017 4.017
13 O -0.391 6.391
14 C 0.006 3.994
15 N -0.350 5.350
16 C 0.376 3.624
17 O -0.417 6.417
18 C -0.410 4.410
19 S 0.750 5.250
20 N -0.364 5.364
21 C -0.064 4.064
22 Cl 0.050 6.950
23 C -0.086 4.086
24 Cl 0.053 6.947
25 H 0.057 0.943
26 H 0.205 0.795
27 H 0.054 0.946
28 H 0.085 0.915
29 H 0.233 0.767
30 H 0.107 0.893
31 H 0.078 0.922
32 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges 2.336 -10.301 10.649 14.998
hybrid contribution -0.815 -0.419 -0.609 1.100
sum 1.521 -10.720 10.040 14.766
Atomic orbital electron populations
1.69822 1.06530 1.25772 1.59323 1.25384 0.95992 1.00483 1.03901
0.85397 0.77197 0.80060 0.78137 1.21164 1.23222 1.19882 1.19566
0.91534 0.84724 1.40973 0.89935 1.42508 1.05453 1.00207 1.88220
1.20898 0.95276 0.85207 0.93617 0.89708 1.22884 0.86563 0.98665
0.93595 1.86514 1.32897 1.92079 1.27589 1.21550 0.99032 0.97660
0.81204 1.45797 1.49847 1.21179 1.18201 1.16551 0.79044 0.84429
0.82400 1.90836 1.56951 1.22599 1.71298 1.26715 1.08004 1.04711
1.01593 1.82210 1.36686 1.10282 0.95830 1.71516 1.17735 1.18932
1.28182 1.20908 1.01933 0.91027 0.92559 1.98423 1.66749 1.83681
1.46143 1.20951 1.01115 0.93158 0.93359 1.98415 1.82574 1.18563
1.95116 0.94326 0.79463 0.94562 0.91522 0.76701 0.89253 0.92246
0.75399
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 42.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -54.79 13.06 21.65 0.28 -54.51 16
2 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16
3 Si 0.96 42.37 29.55 68.60 2.03 44.39 16
4 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16
5 H -0.31 -14.05 7.11 99.48 0.71 -13.35 16
6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16
7 C -0.24 -11.37 9.93 84.03 0.83 -10.54 16
8 H 0.08 3.72 7.83 -2.91 -0.02 3.69 16
9 N -0.72 -31.42 4.51 -322.95 -1.46 -32.88 16
10 C 0.16 5.20 2.84 44.99 0.13 5.33 16
11 H 0.09 2.50 8.08 -2.38 -0.02 2.48 16
12 C 0.06 1.87 6.86 71.98 0.49 2.36 16
13 O -0.58 -18.51 12.64 -148.98 -1.88 -20.40 16
14 C 0.13 3.97 5.12 86.38 0.44 4.41 16
15 N -0.70 -21.12 5.38 -466.80 -2.51 -23.63 16
16 C 0.59 18.56 7.80 86.53 0.67 19.24 16
17 O -0.54 -19.43 15.67 -4.19 -0.07 -19.49 16
18 C -0.28 -7.61 6.76 24.62 0.17 -7.44 16
19 S 0.60 13.94 22.81 -56.49 -1.29 12.65 16
20 N -0.53 -13.45 11.28 -76.42 -0.86 -14.31 16
21 C 0.13 3.39 7.16 84.93 0.61 4.00 16
22 Cl 0.02 0.49 28.63 -2.72 -0.08 0.42 16
23 C -0.04 -1.09 6.52 22.23 0.15 -0.94 16
24 Cl 0.02 0.65 27.26 -2.72 -0.07 0.57 16
25 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16
26 H 0.37 18.55 7.80 -92.71 -0.72 17.82 16
27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16
28 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16
29 H 0.39 8.42 9.12 -74.06 -0.68 7.74 16
30 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16
31 H 0.06 2.13 7.39 -2.38 -0.02 2.12 16
32 H 0.41 12.10 7.51 -92.70 -0.70 11.40 16
Total: -1.00 -63.04 331.06 -2.81 -65.86
By element:
Atomic # 1 Polarization: 28.67 SS G_CDS: -0.86 Total: 27.81 kcal
Atomic # 6 Polarization: 9.56 SS G_CDS: 3.96 Total: 13.52 kcal
Atomic # 7 Polarization: -120.78 SS G_CDS: -4.55 Total: -125.33 kcal
Atomic # 8 Polarization: -37.94 SS G_CDS: -1.95 Total: -39.89 kcal
Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal
Atomic # 16 Polarization: 13.94 SS G_CDS: -1.29 Total: 12.65 kcal
Atomic # 17 Polarization: 1.14 SS G_CDS: -0.15 Total: 0.99 kcal
Total: -63.04 -2.81 -65.86 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001331725296.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.153 kcal
(2) G-P(sol) polarization free energy of solvation -63.042 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.890 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.814 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.703 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds