Wall clock time and date at job start Tue Mar 31 2020 22:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.50095 * 2 1 4 4 C 1.53042 * 109.52282 * 239.91306 * 2 1 3 5 5 C 1.53038 * 109.54131 * 301.40265 * 4 2 1 6 6 C 1.53623 * 109.24066 * 298.50916 * 5 4 2 7 7 N 1.46927 * 108.54310 * 54.85845 * 6 5 4 8 8 C 1.34777 * 120.63262 * 126.36883 * 7 6 5 9 9 O 1.21585 * 119.99964 * 185.08519 * 8 7 6 10 10 N 1.34775 * 119.99964 * 5.08351 * 8 7 6 11 11 C 1.46497 * 120.00234 * 175.31436 * 10 8 7 12 12 C 1.53042 * 109.46048 * 84.97044 * 11 10 8 13 13 C 1.53159 * 109.32877 * 181.38874 * 12 11 10 14 14 N 1.46930 * 108.76528 * 305.35882 * 13 12 11 15 15 C 1.36938 * 120.62920 * 233.62618 * 14 13 12 16 16 H 1.08003 * 120.00019 * 150.90912 * 15 14 13 17 17 C 1.38812 * 120.00500 * 330.91553 * 15 14 13 18 18 N 1.31625 * 119.99562 * 344.57635 * 17 15 14 19 19 Si 1.86801 * 120.00608 * 164.57598 * 17 15 14 20 20 H 1.48498 * 109.46779 * 60.00008 * 19 17 15 21 21 H 1.48498 * 109.47107 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47014 * 300.00307 * 19 17 15 23 23 C 1.46924 * 118.74369 * 53.60980 * 14 13 12 24 24 C 1.53039 * 109.46161 * 205.03177 * 11 10 8 25 25 C 1.46932 * 118.73475 * 306.09249 * 7 6 5 26 26 H 1.09003 * 109.58695 * 294.06823 * 25 7 6 27 27 C 1.53001 * 109.58263 * 173.64866 * 25 7 6 28 28 C 1.52997 * 109.47054 * 179.42733 * 27 25 7 29 29 N 1.46904 * 109.47479 * 179.21722 * 28 27 25 30 30 H 1.09002 * 109.47127 * 299.93818 * 1 2 3 31 31 H 1.09003 * 109.46775 * 59.93427 * 1 2 3 32 32 H 1.08995 * 109.47113 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.45532 * 61.42395 * 4 2 1 34 34 H 1.09001 * 109.45511 * 181.38951 * 4 2 1 35 35 H 1.08993 * 109.49644 * 58.58469 * 5 4 2 36 36 H 1.09000 * 109.49892 * 178.68319 * 5 4 2 37 37 H 1.08995 * 109.74161 * 295.12004 * 6 5 4 38 38 H 1.09002 * 109.66131 * 174.54622 * 6 5 4 39 39 H 0.97006 * 119.99828 * 355.31684 * 10 8 7 40 40 H 1.09001 * 109.45749 * 325.00242 * 11 10 8 41 41 H 1.08996 * 109.49499 * 301.32640 * 12 11 10 42 42 H 1.09002 * 109.49551 * 61.42225 * 12 11 10 43 43 H 1.08999 * 109.59419 * 185.57398 * 13 12 11 44 44 H 1.08998 * 109.70873 * 65.20710 * 13 12 11 45 45 H 0.97000 * 120.00060 * 179.97438 * 18 17 15 46 46 H 1.08997 * 109.58909 * 186.60281 * 23 14 13 47 47 H 1.09009 * 109.58633 * 66.17454 * 23 14 13 48 48 H 1.08999 * 109.49094 * 298.57410 * 24 11 10 49 49 H 1.08993 * 109.49989 * 58.67263 * 24 11 10 50 50 H 1.09009 * 109.47211 * 299.42406 * 27 25 7 51 51 H 1.08997 * 109.47224 * 59.42613 * 27 25 7 52 52 H 1.09007 * 109.47231 * 299.21241 * 28 27 25 53 53 H 1.09001 * 109.47281 * 59.21445 * 28 27 25 54 54 H 1.00897 * 110.99661 * 180.02562 * 29 28 27 55 55 H 1.00909 * 110.99342 * 303.95114 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0415 -0.7231 -1.2481 5 6 1.5043 -2.1560 -1.2657 6 6 2.0201 -2.9053 -0.0278 7 7 1.6521 -2.1380 1.1699 8 6 0.9753 -2.7221 2.1785 9 8 0.5958 -2.0557 3.1221 10 7 0.7191 -4.0447 2.1412 11 6 0.0748 -4.6986 3.2828 12 6 -1.4438 -4.5493 3.1656 13 6 -2.1127 -5.2036 4.3781 14 7 -1.6494 -6.5942 4.4803 15 6 -2.5475 -7.6257 4.5475 16 1 -2.2816 -8.5992 4.1627 17 6 -3.7998 -7.4202 5.1100 18 7 -4.0243 -6.3505 5.8434 19 14 -5.1666 -8.6615 4.8261 20 1 -4.7496 -9.9858 5.3530 21 1 -6.3955 -8.2141 5.5294 22 1 -5.4407 -8.7718 3.3708 23 6 -0.2041 -6.8571 4.5087 24 6 0.4434 -6.1839 3.2945 25 6 2.0413 -0.7234 1.2498 26 1 3.1274 -0.6455 1.2986 27 6 1.4222 -0.0909 2.4978 28 6 1.8407 1.3780 2.5861 29 7 1.2311 1.9903 3.7743 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6994 -0.1960 -2.1388 34 1 3.1312 -0.7441 -1.2346 35 1 0.4146 -2.1361 -1.2541 36 1 1.8498 -2.6630 -2.1666 37 1 3.1045 -3.0016 -0.0811 38 1 1.5651 -3.8948 0.0180 39 1 0.9614 -4.5638 1.3583 40 1 0.4151 -4.2327 4.2076 41 1 -1.7039 -3.4913 3.1339 42 1 -1.7879 -5.0365 2.2532 43 1 -3.1952 -5.1875 4.2514 44 1 -1.8427 -4.6611 5.2841 45 1 -4.8994 -6.2066 6.2362 46 1 -0.0273 -7.9319 4.4681 47 1 0.2237 -6.4486 5.4244 48 1 0.0816 -6.6556 2.3810 49 1 1.5266 -6.2894 3.3546 50 1 0.3357 -0.1562 2.4375 51 1 1.7694 -0.6216 3.3844 52 1 2.9263 1.4428 2.6606 53 1 1.5056 1.9056 1.6931 54 1 1.4923 2.9616 3.8547 55 1 0.2276 1.8860 3.7602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335431048.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:56 Heat of formation + Delta-G solvation = -18.078944 kcal Electronic energy + Delta-G solvation = -31903.685700 eV Core-core repulsion = 27975.376804 eV Total energy + Delta-G solvation = -3928.308896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95139 -39.81222 -38.50911 -36.72185 -35.80988 -34.60574 -33.64544 -32.92450 -31.70287 -31.10487 -29.38745 -27.59391 -26.97007 -25.49890 -24.26569 -23.89432 -23.50125 -22.12532 -21.31773 -21.05110 -19.75263 -18.83643 -18.45412 -17.41683 -16.94445 -16.75214 -16.61565 -16.30718 -15.94501 -15.64170 -15.39155 -15.34332 -15.21258 -14.87090 -14.63122 -14.56945 -14.44694 -14.24728 -14.01294 -13.87151 -13.36060 -13.18505 -13.07257 -12.96631 -12.69381 -12.56599 -12.54183 -12.42801 -12.27403 -12.10270 -12.04470 -11.91529 -11.78417 -11.67296 -11.47698 -11.35806 -11.32412 -11.21219 -10.56870 -10.25779 -9.92890 -9.48472 -9.33675 -8.69343 -7.86375 -5.34811 1.47385 1.50116 1.57069 1.69132 2.25984 2.51894 2.95007 3.29762 3.59652 3.67787 3.79239 3.86705 3.89287 3.92773 4.08489 4.12574 4.21607 4.27611 4.35461 4.41601 4.48358 4.51561 4.55347 4.60144 4.67905 4.69370 4.75242 4.80654 4.81690 4.86387 4.90994 4.97916 5.05511 5.08836 5.09272 5.14725 5.18241 5.25471 5.28513 5.32201 5.38265 5.45705 5.50364 5.54141 5.63850 5.68853 5.71223 5.87445 6.03936 6.26637 6.39490 6.61172 7.09369 7.14014 7.72652 7.84518 8.38148 9.20349 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.002783 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.393071 B =10060.026777 C =10682.291172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.095 0.905 4 C -0.109 4.109 5 C -0.135 4.135 6 C 0.106 3.894 7 N -0.621 5.621 8 C 0.695 3.305 9 O -0.616 6.616 10 N -0.731 5.731 11 C 0.184 3.816 12 C -0.126 4.126 13 C 0.186 3.814 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.074 0.926 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.297 1.297 22 H -0.276 1.276 23 C 0.142 3.858 24 C -0.120 4.120 25 C 0.169 3.831 26 H 0.081 0.919 27 C -0.095 4.095 28 C 0.060 3.940 29 N -0.864 5.864 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.403 0.597 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.056 0.944 43 H 0.053 0.947 44 H -0.013 1.013 45 H 0.249 0.751 46 H 0.068 0.932 47 H 0.010 0.990 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.053 0.947 51 H 0.055 0.945 52 H 0.072 0.928 53 H 0.040 0.960 54 H 0.349 0.651 55 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.996 13.130 -19.164 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.113 0.887 4 C -0.147 4.147 5 C -0.173 4.173 6 C -0.017 4.017 7 N -0.358 5.358 8 C 0.397 3.603 9 O -0.496 6.496 10 N -0.389 5.389 11 C 0.079 3.921 12 C -0.166 4.166 13 C 0.059 3.941 14 N -0.333 5.333 15 C -0.394 4.394 16 H 0.091 0.909 17 C -0.249 4.249 18 N -0.585 5.585 19 Si 0.799 3.201 20 H -0.198 1.198 21 H -0.224 1.224 22 H -0.202 1.202 23 C 0.017 3.983 24 C -0.160 4.160 25 C 0.066 3.934 26 H 0.099 0.901 27 C -0.133 4.133 28 C -0.071 4.071 29 N -0.395 5.395 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.242 0.758 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.005 0.995 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.028 0.972 48 H 0.092 0.908 49 H 0.108 0.892 50 H 0.071 0.929 51 H 0.074 0.926 52 H 0.090 0.910 53 H 0.058 0.942 54 H 0.162 0.838 55 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.049 13.085 -17.987 28.025 hybrid contribution -1.747 -0.059 -0.334 1.779 sum 15.302 13.026 -18.320 27.193 Atomic orbital electron populations 1.21822 0.95999 1.00985 1.01078 1.21569 0.95596 1.00099 0.94493 0.88723 1.21536 1.01221 0.95009 0.96925 1.22027 1.00904 0.96629 0.97703 1.21976 1.01328 0.94702 0.83655 1.47316 1.58891 1.11546 1.18094 1.16237 0.78962 0.82129 0.82944 1.90994 1.58816 1.62278 1.37533 1.45439 1.65250 1.07267 1.20910 1.20425 0.90954 0.92854 0.87896 1.22267 0.96334 0.98623 0.99418 1.20423 0.97843 0.83634 0.92200 1.44332 1.01189 1.02370 1.85403 1.19544 0.95256 0.92597 1.31990 0.90865 1.25931 1.02018 0.99784 0.97203 1.70205 1.22310 1.30707 1.35256 0.85287 0.78279 0.78777 0.77771 1.19783 1.22356 1.20188 1.21035 0.83674 0.98818 0.94822 1.22127 1.00943 0.92800 1.00098 1.21172 0.98423 0.78613 0.95233 0.90096 1.21870 1.00615 0.93860 0.96997 1.21970 0.99449 0.94702 0.91003 1.58599 1.15381 1.22143 1.43377 0.94121 0.91782 0.94227 0.90593 0.90302 0.92620 0.88601 0.89370 0.89987 0.75812 0.92980 0.94046 0.92542 0.92900 0.99503 0.94206 0.91331 0.97167 0.90810 0.89212 0.92876 0.92630 0.90978 0.94167 0.83756 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.20 71.98 0.59 -2.04 16 2 C -0.10 -1.40 2.32 -10.72 -0.02 -1.42 16 3 H 0.09 1.09 6.76 -2.39 -0.02 1.07 16 4 C -0.11 -1.08 5.43 30.62 0.17 -0.92 16 5 C -0.13 -1.48 5.75 30.82 0.18 -1.30 16 6 C 0.11 1.43 6.42 86.51 0.56 1.98 16 7 N -0.62 -13.32 2.41 -812.04 -1.95 -15.27 16 8 C 0.70 21.19 8.18 179.05 1.46 22.65 16 9 O -0.62 -24.23 11.42 -3.98 -0.05 -24.28 16 10 N -0.73 -20.57 4.99 -457.69 -2.28 -22.85 16 11 C 0.18 6.57 2.38 45.02 0.11 6.68 16 12 C -0.13 -5.33 5.65 30.66 0.17 -5.16 16 13 C 0.19 9.72 5.29 86.35 0.46 10.17 16 14 N -0.61 -31.46 2.99 -699.14 -2.09 -33.55 16 15 C -0.26 -14.67 9.58 84.03 0.81 -13.87 16 16 H 0.07 3.87 7.88 -2.91 -0.02 3.84 16 17 C -0.05 -3.10 4.95 84.86 0.42 -2.68 16 18 N -0.94 -57.80 11.17 21.65 0.24 -57.55 16 19 Si 0.97 45.50 29.58 68.60 2.03 47.53 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.14 5.89 6.52 86.36 0.56 6.45 16 24 C -0.12 -3.83 5.55 30.67 0.17 -3.66 16 25 C 0.17 3.27 2.71 44.97 0.12 3.39 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 C -0.10 -2.45 2.93 30.59 0.09 -2.36 16 28 C 0.06 1.17 6.49 86.30 0.56 1.73 16 29 N -0.86 -18.35 9.63 -186.70 -1.80 -20.15 16 30 H 0.04 0.89 6.33 -2.39 -0.02 0.87 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.90 5.97 -2.39 -0.01 0.88 16 33 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.83 6.34 -2.39 -0.02 0.82 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.03 5.65 -2.39 -0.01 1.01 16 39 H 0.40 8.59 6.09 -92.70 -0.56 8.03 16 40 H 0.05 2.18 7.65 -2.39 -0.02 2.16 16 41 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.05 3.11 6.08 -2.39 -0.01 3.09 16 44 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 45 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 47 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.05 1.67 5.22 -2.38 -0.01 1.65 16 51 H 0.06 1.91 6.39 -2.39 -0.02 1.89 16 52 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 53 H 0.04 0.64 6.56 -2.39 -0.02 0.62 16 54 H 0.35 5.52 9.08 -89.70 -0.81 4.71 16 55 H 0.34 7.43 8.99 -89.69 -0.81 6.63 16 Total: -1.00 -73.82 398.86 -0.78 -74.60 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -1.28 Total: 31.88 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 6.39 Total: 19.65 kcal Atomic # 7 Polarization: -141.50 SS G_CDS: -7.88 Total: -149.38 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -73.82 -0.78 -74.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335431048.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.522 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds