Wall clock time and date at job start Tue Mar 31 2020 22:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40281 * 126.44149 * 2 1 4 4 C 1.36606 * 106.72923 * 179.97438 * 3 2 1 5 5 C 1.46540 * 125.98004 * 180.02562 * 4 3 2 6 6 O 1.21742 * 119.99741 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00285 * 180.02562 * 5 4 3 8 8 C 1.40525 * 120.00193 * 179.97438 * 7 5 4 9 9 C 1.40672 * 126.08548 * 0.03059 * 8 7 5 10 10 N 1.30899 * 108.38651 * 179.69344 * 9 8 7 11 11 N 1.40065 * 108.41187 * 0.43844 * 10 9 8 12 12 C 1.37320 * 126.06888 * 179.81749 * 11 10 9 13 13 H 1.08002 * 120.00430 * 179.69737 * 12 11 10 14 14 C 1.38992 * 119.99664 * 359.41613 * 12 11 10 15 15 N 1.31294 * 120.00157 * 0.27652 * 14 12 11 16 16 Si 1.86803 * 119.99838 * 180.27798 * 14 12 11 17 17 H 1.48504 * 109.47034 * 59.99910 * 16 14 12 18 18 H 1.48498 * 109.47326 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46993 * 299.99983 * 16 14 12 20 20 C 1.35695 * 126.08225 * 179.97438 * 8 7 5 21 21 O 1.34962 * 108.03849 * 0.26732 * 4 3 2 22 22 C 1.33961 * 109.37017 * 359.56388 * 21 4 3 23 23 Br 1.89102 * 125.62975 * 180.15442 * 22 21 4 24 24 H 1.08996 * 109.47721 * 89.99241 * 1 2 3 25 25 H 1.08998 * 109.47128 * 210.00222 * 1 2 3 26 26 H 1.09009 * 109.47043 * 329.99393 * 1 2 3 27 27 H 1.07998 * 126.63592 * 359.97438 * 3 2 1 28 28 H 0.96996 * 119.99811 * 0.02562 * 7 5 4 29 29 H 1.07995 * 125.80346 * 359.97438 * 9 8 7 30 30 H 0.96996 * 120.00263 * 179.97438 * 15 14 12 31 31 H 1.07993 * 126.24986 * 0.05458 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3403 1.1285 0.0000 4 6 3.6263 0.6677 0.0006 5 6 4.8368 1.4937 0.0013 6 8 4.7453 2.7077 0.0019 7 7 6.0513 0.9094 0.0013 8 6 7.2121 1.7015 0.0015 9 6 7.2557 3.1076 0.0023 10 7 8.5100 3.4817 0.0089 11 7 9.3139 2.3347 0.0023 12 6 10.6869 2.3097 0.0026 13 1 11.2098 1.3647 0.0021 14 6 11.4036 3.5005 -0.0024 15 7 10.7680 4.6493 -0.0019 16 14 13.2713 3.4664 -0.0099 17 1 13.7486 2.7553 -1.2230 18 1 13.7918 4.8572 -0.0138 19 1 13.7583 2.7597 1.2020 20 6 8.4903 1.2461 0.0020 21 8 3.5869 -0.6813 -0.0051 22 6 2.3107 -1.0885 0.0004 23 35 1.7285 -2.8877 0.0000 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5140 27 1 2.0259 2.1617 -0.0004 28 1 6.1242 -0.0578 0.0005 29 1 6.3998 3.7662 0.0025 30 1 11.2682 5.4804 -0.0050 31 1 8.7996 0.2114 0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412472284.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:34 Heat of formation + Delta-G solvation = 72.007432 kcal Electronic energy + Delta-G solvation = -19967.023281 eV Core-core repulsion = 16492.018167 eV Total energy + Delta-G solvation = -3475.005114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.91297 -39.93407 -38.52145 -34.83909 -34.22505 -33.21555 -32.33095 -30.42890 -29.98664 -28.16112 -27.03848 -25.01711 -23.16026 -21.43659 -21.02025 -19.97045 -19.38259 -17.96559 -17.35989 -16.73568 -16.13082 -15.49981 -15.31216 -14.49995 -14.36055 -13.88502 -13.76480 -13.47325 -13.28009 -13.18829 -12.97892 -12.86862 -12.04374 -11.71372 -11.55026 -11.52243 -11.27685 -11.04497 -10.98171 -10.58650 -10.31315 -9.93444 -9.66214 -9.23492 -8.88653 -8.70596 -8.12642 -6.78800 -6.60364 -4.27935 0.54355 0.80193 1.96325 2.85988 2.91888 3.03001 3.07110 3.18959 3.51287 3.67126 3.84135 4.36167 4.43064 4.57498 4.84341 4.97863 5.12486 5.24733 5.33950 5.37505 5.66707 5.69751 6.08059 6.18503 6.32899 6.49346 6.79057 6.88038 7.00157 7.16000 7.79363 8.02373 8.17422 8.47143 8.68818 9.30862 9.59509 10.35404 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.032120 B = 0.002320 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.514814 B =12063.738640 C =12920.095886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.130 4.130 3 C -0.131 4.131 4 C -0.025 4.025 5 C 0.578 3.422 6 O -0.510 6.510 7 N -0.603 5.603 8 C -0.067 4.067 9 C -0.028 4.028 10 N -0.260 5.260 11 N -0.139 5.139 12 C -0.322 4.322 13 H 0.117 0.883 14 C 0.046 3.954 15 N -0.768 5.768 16 Si 0.936 3.064 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.266 1.266 20 C -0.079 4.079 21 O -0.149 6.149 22 C -0.021 4.021 23 Br 0.053 6.947 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.169 0.831 28 H 0.403 0.597 29 H 0.177 0.823 30 H 0.277 0.723 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.328 -14.565 -0.028 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.152 4.152 4 C -0.080 4.080 5 C 0.363 3.637 6 O -0.389 6.389 7 N -0.243 5.243 8 C -0.173 4.173 9 C -0.203 4.203 10 N -0.090 5.090 11 N 0.094 4.906 12 C -0.455 4.455 13 H 0.135 0.865 14 C -0.171 4.171 15 N -0.394 5.394 16 Si 0.760 3.240 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.191 1.191 20 C -0.231 4.231 21 O -0.045 6.045 22 C -0.151 4.151 23 Br 0.137 6.863 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.187 0.813 28 H 0.237 0.763 29 H 0.194 0.806 30 H 0.087 0.913 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.458 -13.303 -0.024 21.949 hybrid contribution 0.357 -1.001 -0.017 1.063 sum -17.101 -14.304 -0.041 22.295 Atomic orbital electron populations 1.20337 0.87846 1.03493 1.03024 1.20285 0.97751 0.90529 1.04876 1.21805 0.90048 1.00515 1.02847 1.22599 0.96990 0.79274 1.09094 1.16288 0.80678 0.86326 0.80402 1.90806 1.84854 1.11733 1.51458 1.42380 1.03731 1.09289 1.68917 1.17232 0.84117 0.91081 1.24823 1.24128 0.96365 0.92324 1.07505 1.78275 0.99010 1.05989 1.25757 1.44582 1.05111 1.02316 1.38566 1.19873 0.76723 0.95494 1.53368 0.86507 1.25664 1.01493 0.94585 0.95393 1.70200 1.36689 0.97743 1.34759 0.85872 0.80324 0.78301 0.79530 1.19102 1.20080 1.19101 1.21263 0.88964 0.93185 1.19645 1.84121 1.27088 1.22397 1.70893 1.23945 0.83731 0.93342 1.14100 1.96837 1.85345 1.06374 1.97777 0.90468 0.90911 0.90476 0.81306 0.76338 0.80598 0.91282 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 10.17 36.01 0.37 -0.31 16 2 C -0.13 -1.44 6.14 -104.90 -0.64 -2.08 16 3 C -0.13 -1.70 10.57 -39.40 -0.42 -2.11 16 4 C -0.02 -0.37 7.13 -36.83 -0.26 -0.63 16 5 C 0.58 10.67 7.75 -12.91 -0.10 10.57 16 6 O -0.51 -10.91 14.01 5.15 0.07 -10.84 16 7 N -0.60 -11.23 5.46 -11.21 -0.06 -11.29 16 8 C -0.07 -1.55 6.90 -83.86 -0.58 -2.13 16 9 C -0.03 -0.72 10.85 -17.03 -0.18 -0.91 16 10 N -0.26 -7.49 10.39 30.80 0.32 -7.17 16 11 N -0.14 -3.79 3.74 -11.40 -0.04 -3.83 16 12 C -0.32 -8.44 10.25 -14.81 -0.15 -8.59 16 13 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 14 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 15 N -0.77 -21.24 11.81 55.50 0.66 -20.58 16 16 Si 0.94 18.70 29.55 -169.99 -5.02 13.67 16 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 C -0.08 -1.86 11.50 -16.38 -0.19 -2.05 16 21 O -0.15 -2.05 10.40 4.78 0.05 -2.00 16 22 C -0.02 -0.25 7.80 29.69 0.23 -0.02 16 23 Br 0.05 0.48 33.48 -68.01 -2.28 -1.80 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.48 7.76 -51.93 -0.40 0.07 16 26 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 28 H 0.40 6.16 8.58 -40.82 -0.35 5.81 16 29 H 0.18 4.51 5.91 -52.49 -0.31 4.20 16 30 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 305.49 15.07 4.60 4.60 Total: -1.00 -31.76 305.49 -6.03 -37.79 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -2.30 Total: 8.64 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.03 Total: -7.19 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.87 Total: -42.87 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.12 Total: -12.83 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Atomic # 35 Polarization: 0.48 SS G_CDS: -2.28 Total: -1.80 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.76 -6.03 -37.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412472284.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.793 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds