Wall clock time and date at job start Tue Mar 31 2020 22:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40281 * 126.44149 * 2 1 4 4 C 1.36606 * 106.72923 * 179.97438 * 3 2 1 5 5 C 1.46540 * 125.98004 * 180.02562 * 4 3 2 6 6 O 1.21742 * 119.99741 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00285 * 180.02562 * 5 4 3 8 8 C 1.40525 * 120.00193 * 179.97438 * 7 5 4 9 9 C 1.40672 * 126.08548 * 0.03059 * 8 7 5 10 10 N 1.30899 * 108.38651 * 179.69344 * 9 8 7 11 11 N 1.40065 * 108.41187 * 0.43844 * 10 9 8 12 12 C 1.37320 * 126.06888 * 179.81749 * 11 10 9 13 13 H 1.08002 * 120.00430 * 179.69737 * 12 11 10 14 14 C 1.38992 * 119.99664 * 359.41613 * 12 11 10 15 15 N 1.31294 * 120.00157 * 0.27652 * 14 12 11 16 16 Si 1.86803 * 119.99838 * 180.27798 * 14 12 11 17 17 H 1.48504 * 109.47034 * 59.99910 * 16 14 12 18 18 H 1.48498 * 109.47326 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46993 * 299.99983 * 16 14 12 20 20 C 1.35695 * 126.08225 * 179.97438 * 8 7 5 21 21 O 1.34962 * 108.03849 * 0.26732 * 4 3 2 22 22 C 1.33961 * 109.37017 * 359.56388 * 21 4 3 23 23 Br 1.89102 * 125.62975 * 180.15442 * 22 21 4 24 24 H 1.08996 * 109.47721 * 89.99241 * 1 2 3 25 25 H 1.08998 * 109.47128 * 210.00222 * 1 2 3 26 26 H 1.09009 * 109.47043 * 329.99393 * 1 2 3 27 27 H 1.07998 * 126.63592 * 359.97438 * 3 2 1 28 28 H 0.96996 * 119.99811 * 0.02562 * 7 5 4 29 29 H 1.07995 * 125.80346 * 359.97438 * 9 8 7 30 30 H 0.96996 * 120.00263 * 179.97438 * 15 14 12 31 31 H 1.07993 * 126.24986 * 0.05458 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3403 1.1285 0.0000 4 6 3.6263 0.6677 0.0006 5 6 4.8368 1.4937 0.0013 6 8 4.7453 2.7077 0.0019 7 7 6.0513 0.9094 0.0013 8 6 7.2121 1.7015 0.0015 9 6 7.2557 3.1076 0.0023 10 7 8.5100 3.4817 0.0089 11 7 9.3139 2.3347 0.0023 12 6 10.6869 2.3097 0.0026 13 1 11.2098 1.3647 0.0021 14 6 11.4036 3.5005 -0.0024 15 7 10.7680 4.6493 -0.0019 16 14 13.2713 3.4664 -0.0099 17 1 13.7486 2.7553 -1.2230 18 1 13.7918 4.8572 -0.0138 19 1 13.7583 2.7597 1.2020 20 6 8.4903 1.2461 0.0020 21 8 3.5869 -0.6813 -0.0051 22 6 2.3107 -1.0885 0.0004 23 35 1.7285 -2.8877 0.0000 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5140 27 1 2.0259 2.1617 -0.0004 28 1 6.1242 -0.0578 0.0005 29 1 6.3998 3.7662 0.0025 30 1 11.2682 5.4804 -0.0050 31 1 8.7996 0.2114 0.0016 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412472284.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:34 Heat of formation + Delta-G solvation = 51.069283 kcal Electronic energy + Delta-G solvation = -19967.931227 eV Core-core repulsion = 16492.018167 eV Total energy + Delta-G solvation = -3475.913060 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.94236 -41.75183 -40.17861 -36.19377 -35.52686 -34.98755 -33.27011 -32.31390 -31.11668 -29.74704 -28.10312 -26.82294 -24.51405 -22.90408 -22.47741 -21.54948 -20.96168 -19.38525 -18.94664 -17.80234 -17.49355 -17.23058 -16.96419 -16.06604 -15.92699 -15.33959 -15.09070 -14.92631 -14.65579 -14.25916 -14.06429 -13.78059 -13.49547 -13.37914 -12.91509 -12.89506 -12.72990 -12.34995 -12.13544 -11.98033 -11.78129 -11.26799 -11.06643 -10.89541 -10.86683 -10.14744 -9.69303 -8.62006 -8.48926 -6.27133 -0.35751 -0.32325 0.95158 1.29160 1.39910 1.56555 1.65543 1.68016 1.93512 2.06608 2.28726 2.49545 2.88062 3.07306 3.54303 3.66296 4.15934 4.20602 4.38141 4.48124 4.53713 4.81867 4.86795 4.95702 4.96635 4.99724 5.20380 5.29362 5.32870 5.50860 5.91676 6.23408 6.50299 6.68312 7.06629 7.40969 7.61923 8.50189 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.032120 B = 0.002320 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.514814 B =12063.738640 C =12920.095886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.054 4.054 5 C 0.584 3.416 6 O -0.545 6.545 7 N -0.600 5.600 8 C -0.053 4.053 9 C -0.052 4.052 10 N -0.307 5.307 11 N -0.164 5.164 12 C -0.354 4.354 13 H 0.142 0.858 14 C -0.006 4.006 15 N -0.822 5.822 16 Si 1.021 2.979 17 H -0.253 1.253 18 H -0.277 1.277 19 H -0.253 1.253 20 C -0.076 4.076 21 O -0.155 6.155 22 C -0.024 4.024 23 Br 0.084 6.916 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.178 0.822 28 H 0.420 0.580 29 H 0.172 0.828 30 H 0.278 0.722 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.216 -17.183 -0.043 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.138 4.138 4 C -0.109 4.109 5 C 0.372 3.628 6 O -0.426 6.426 7 N -0.243 5.243 8 C -0.159 4.159 9 C -0.227 4.227 10 N -0.139 5.139 11 N 0.068 4.932 12 C -0.485 4.485 13 H 0.160 0.840 14 C -0.218 4.218 15 N -0.450 5.450 16 Si 0.839 3.161 17 H -0.177 1.177 18 H -0.202 1.202 19 H -0.177 1.177 20 C -0.227 4.227 21 O -0.052 6.052 22 C -0.154 4.154 23 Br 0.168 6.832 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.195 0.805 28 H 0.257 0.743 29 H 0.189 0.811 30 H 0.088 0.912 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.384 -15.976 -0.039 24.356 hybrid contribution 0.336 -0.368 -0.012 0.498 sum -18.049 -16.344 -0.051 24.349 Atomic orbital electron populations 1.20495 0.85098 1.04801 1.04343 1.20676 0.99449 0.89311 1.03778 1.22111 0.89603 1.01670 1.00447 1.21862 0.95934 0.80015 1.13062 1.16654 0.81339 0.86309 0.78544 1.90782 1.85674 1.13536 1.52575 1.42285 1.02647 1.09816 1.69530 1.17280 0.85661 0.90362 1.22636 1.24203 0.95735 0.94054 1.08756 1.78168 1.00199 1.08063 1.27484 1.44872 1.05821 1.02654 1.39864 1.20634 0.76814 0.97047 1.54018 0.84025 1.26904 1.07162 0.93697 0.94008 1.70379 1.39088 0.98694 1.36794 0.84635 0.72886 0.78286 0.80295 1.17710 1.20224 1.17707 1.21971 0.88625 0.94305 1.17755 1.84082 1.28293 1.21510 1.71329 1.24566 0.83093 0.95165 1.12553 1.96881 1.84758 1.03974 1.97610 0.89021 0.89636 0.89209 0.80458 0.74294 0.81095 0.91230 0.79419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 10.17 71.24 0.72 -0.33 16 2 C -0.13 -2.51 6.14 -20.04 -0.12 -2.63 16 3 C -0.12 -2.86 10.57 22.38 0.24 -2.63 16 4 C -0.05 -1.60 7.13 24.05 0.17 -1.43 16 5 C 0.58 21.70 7.75 86.41 0.67 22.37 16 6 O -0.55 -24.00 14.01 -4.48 -0.06 -24.06 16 7 N -0.60 -22.22 5.46 -307.59 -1.68 -23.90 16 8 C -0.05 -2.50 6.90 37.75 0.26 -2.24 16 9 C -0.05 -2.85 10.85 85.43 0.93 -1.93 16 10 N -0.31 -18.54 10.39 -56.46 -0.59 -19.12 16 11 N -0.16 -9.12 3.74 -190.00 -0.71 -9.83 16 12 C -0.35 -18.67 10.25 84.01 0.86 -17.81 16 13 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 14 C -0.01 -0.29 5.50 84.95 0.47 0.18 16 15 N -0.82 -47.21 11.81 21.66 0.26 -46.95 16 16 Si 1.02 38.24 29.55 68.60 2.03 40.26 16 17 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 18 H -0.28 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 20 C -0.08 -3.55 11.50 83.38 0.96 -2.59 16 21 O -0.16 -4.03 10.40 -5.81 -0.06 -4.09 16 22 C -0.02 -0.52 7.80 67.14 0.52 0.01 16 23 Br 0.08 1.28 33.48 -20.37 -0.68 0.60 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 0.80 7.76 -2.39 -0.02 0.79 16 26 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 28 H 0.42 12.39 8.58 -92.71 -0.80 11.59 16 29 H 0.17 9.30 5.91 -2.91 -0.02 9.28 16 30 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.19 6.93 8.06 -2.91 -0.02 6.91 16 Total: -1.00 -72.12 305.49 4.59 -67.53 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.41 Total: 28.59 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 5.68 Total: -9.02 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -2.72 Total: -99.80 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.12 Total: -28.16 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.26 kcal Atomic # 35 Polarization: 1.28 SS G_CDS: -0.68 Total: 0.60 kcal Total: -72.12 4.59 -67.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412472284.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.602 kcal (2) G-P(sol) polarization free energy of solvation -72.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds