Wall clock time and date at job start Tue Mar 31 2020 22:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34259 * 126.28338 * 2 1 4 4 H 0.96996 * 125.74626 * 359.96212 * 3 2 1 5 5 N 1.39938 * 108.50865 * 179.84737 * 3 2 1 6 6 C 1.30506 * 108.89686 * 0.42822 * 5 3 2 7 7 Br 1.89107 * 125.99964 * 179.75075 * 6 5 3 8 8 C 1.38063 * 126.28185 * 180.30897 * 2 1 3 9 9 C 1.47392 * 126.42123 * 0.02562 * 8 2 1 10 10 O 1.21635 * 119.99552 * 90.00007 * 9 8 2 11 11 N 1.34773 * 119.99960 * 269.99703 * 9 8 2 12 12 C 1.40562 * 119.99866 * 180.02562 * 11 9 8 13 13 C 1.40660 * 126.08453 * 359.68455 * 12 11 9 14 14 N 1.30907 * 108.38986 * 179.88148 * 13 12 11 15 15 N 1.40075 * 108.40652 * 0.38352 * 14 13 12 16 16 C 1.37318 * 126.06563 * 179.73098 * 15 14 13 17 17 H 1.08004 * 119.99823 * 180.02562 * 16 15 14 18 18 C 1.38980 * 120.00244 * 0.03168 * 16 15 14 19 19 N 1.31297 * 120.00250 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00016 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47154 * 59.99731 * 20 18 16 22 22 H 1.48498 * 109.47395 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47087 * 299.99753 * 20 18 16 24 24 C 1.35688 * 126.08390 * 180.02562 * 12 11 9 25 25 H 1.09002 * 109.47152 * 269.69004 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69104 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69085 * 1 2 3 28 28 H 0.96997 * 119.99967 * 359.97438 * 11 9 8 29 29 H 1.08002 * 125.80094 * 0.02562 * 13 12 11 30 30 H 0.96997 * 120.00067 * 180.02562 * 19 18 16 31 31 H 1.08003 * 126.24124 * 359.92346 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3015 1.0823 0.0000 4 1 2.0023 2.0049 -0.0005 5 7 3.6341 0.6551 0.0035 6 6 3.6597 -0.6497 -0.0036 7 35 5.2111 -1.7310 -0.0094 8 6 2.3240 -1.1129 -0.0060 9 6 1.8858 -2.5202 -0.0141 10 8 1.7054 -3.0948 -1.0709 11 7 1.6851 -3.1702 1.1493 12 6 1.2677 -4.5124 1.1416 13 6 1.0163 -5.2952 0.0003 14 7 0.6503 -6.4897 0.3912 15 7 0.6449 -6.5144 1.7918 16 6 0.3111 -7.5880 2.5801 17 1 0.3406 -7.4979 3.6560 18 6 -0.0644 -8.7907 1.9936 19 7 -0.1007 -8.9003 0.6857 20 14 -0.5178 -10.2515 3.0661 21 1 -1.6751 -9.8945 3.9253 22 1 -0.8792 -11.4053 2.2040 23 1 0.6401 -10.6157 3.9215 24 6 1.0293 -5.2815 2.2337 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 1.8294 -2.7120 1.9920 29 1 1.1115 -4.9672 -1.0243 30 1 -0.3632 -9.7396 0.2764 31 1 1.1268 -4.9744 3.2645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417621146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:47 Heat of formation + Delta-G solvation = 126.419045 kcal Electronic energy + Delta-G solvation = -20367.754580 eV Core-core repulsion = 16927.401682 eV Total energy + Delta-G solvation = -3440.352898 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.007 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.64879 -39.72403 -38.22353 -34.11695 -33.41061 -33.11238 -31.91547 -30.41651 -30.10426 -28.09711 -27.24722 -24.88505 -22.71196 -21.56644 -20.87244 -19.76512 -19.29639 -17.95619 -17.31954 -16.17786 -15.64843 -15.39595 -14.95868 -14.61647 -14.31337 -14.09468 -13.49828 -13.35610 -13.25539 -12.87917 -12.84730 -12.46950 -11.65610 -11.47923 -11.41320 -11.36923 -11.21358 -10.93418 -10.54123 -10.40520 -10.09527 -9.52056 -9.35917 -9.12142 -8.81118 -8.76259 -8.01655 -6.65376 -6.52226 -4.19111 1.01732 1.34693 2.01022 2.61277 2.79276 3.04461 3.07040 3.10899 3.70355 3.71817 3.94040 4.32159 4.46613 4.61384 4.77986 4.98386 5.05888 5.19282 5.30542 5.52785 5.61110 5.82157 6.28949 6.51538 6.76478 6.94331 7.00128 7.06359 7.16691 7.28070 7.89586 8.23227 8.32655 8.67188 8.90518 9.41828 9.71433 10.43704 Molecular weight = 339.01amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.003197 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.403066 B = 8757.289466 C = 9560.013266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.136 3.864 3 N -0.452 5.452 4 H 0.445 0.555 5 N -0.264 5.264 6 C 0.108 3.892 7 Br 0.049 6.951 8 C -0.244 4.244 9 C 0.578 3.422 10 O -0.522 6.522 11 N -0.611 5.611 12 C -0.058 4.058 13 C -0.032 4.032 14 N -0.260 5.260 15 N -0.143 5.143 16 C -0.324 4.324 17 H 0.115 0.885 18 C 0.047 3.953 19 N -0.770 5.770 20 Si 0.934 3.066 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.082 4.082 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.397 0.603 29 H 0.176 0.824 30 H 0.275 0.725 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 18.524 1.986 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.004 3.996 3 N -0.161 5.161 4 H 0.291 0.709 5 N -0.089 5.089 6 C -0.137 4.137 7 Br 0.131 6.869 8 C -0.261 4.261 9 C 0.361 3.639 10 O -0.399 6.399 11 N -0.252 5.252 12 C -0.164 4.164 13 C -0.207 4.207 14 N -0.091 5.091 15 N 0.090 4.910 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.170 4.170 19 N -0.397 5.397 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.233 4.233 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.230 0.770 29 H 0.193 0.807 30 H 0.086 0.914 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.144 17.403 0.661 18.160 hybrid contribution -0.658 0.614 1.250 1.541 sum 4.486 18.018 1.911 18.666 Atomic orbital electron populations 1.20641 0.85623 1.05146 1.04484 1.21480 0.94851 0.86064 0.97187 1.45987 1.03505 1.08584 1.58063 0.70927 1.77224 0.96507 1.10892 1.24280 1.23916 0.93412 0.92578 1.03836 1.96861 1.30123 1.62418 1.97545 1.19965 0.90922 0.94764 1.20435 1.16876 0.79078 0.83859 0.84053 1.90701 1.51129 1.67052 1.30972 1.42440 1.64619 1.10553 1.07602 1.17246 1.19881 0.84986 0.94244 1.24119 1.06296 0.91551 0.98759 1.78259 1.25049 1.17636 0.88196 1.44530 1.35997 1.06129 1.04361 1.19808 1.47225 0.88343 0.90229 0.86721 1.25618 0.95900 0.99349 0.96148 1.70206 1.34400 1.25989 1.09072 0.85916 0.79437 0.79521 0.79379 1.19209 1.20168 1.19188 1.21247 1.16808 0.88314 0.96943 0.88978 0.88383 0.90176 0.77017 0.80718 0.91448 0.83747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.25 36.01 0.37 -0.43 16 2 C 0.14 1.49 7.29 -81.59 -0.60 0.90 16 3 N -0.45 -4.29 7.29 33.86 0.25 -4.04 16 4 H 0.45 2.36 8.96 -182.72 -1.64 0.72 16 5 N -0.26 -3.42 12.64 32.15 0.41 -3.01 16 6 C 0.11 1.57 7.76 -16.92 -0.13 1.43 16 7 Br 0.05 0.69 33.93 -68.01 -2.31 -1.62 16 8 C -0.24 -3.59 5.88 -105.04 -0.62 -4.21 16 9 C 0.58 10.50 7.08 -12.54 -0.09 10.41 16 10 O -0.52 -11.52 14.25 5.25 0.07 -11.45 16 11 N -0.61 -11.00 5.46 -10.97 -0.06 -11.06 16 12 C -0.06 -1.32 6.90 -83.85 -0.58 -1.90 16 13 C -0.03 -0.83 10.85 -17.03 -0.18 -1.01 16 14 N -0.26 -7.54 10.40 30.80 0.32 -7.22 16 15 N -0.14 -3.88 3.74 -11.41 -0.04 -3.93 16 16 C -0.32 -8.53 10.25 -14.82 -0.15 -8.68 16 17 H 0.12 2.69 7.83 -52.48 -0.41 2.27 16 18 C 0.05 1.21 5.50 -17.51 -0.10 1.11 16 19 N -0.77 -21.47 11.81 55.49 0.66 -20.82 16 20 Si 0.93 18.85 29.55 -169.99 -5.02 13.83 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 24 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.99 7.96 -51.93 -0.41 0.58 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.40 5.79 8.81 -40.82 -0.36 5.43 16 29 H 0.18 4.56 5.91 -52.49 -0.31 4.25 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.15 2.80 8.06 -52.48 -0.42 2.38 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -34.60 305.76 -6.92 -41.52 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.53 Total: 7.67 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.26 Total: -4.48 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 1.53 Total: -50.08 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 35 Polarization: 0.69 SS G_CDS: -2.31 Total: -1.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.60 -6.92 -41.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417621146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.941 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds