Wall clock time and date at job start Tue Mar 31 2020 22:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34259 * 126.28338 * 2 1 4 4 H 0.96996 * 125.74626 * 359.96212 * 3 2 1 5 5 N 1.39938 * 108.50865 * 179.84737 * 3 2 1 6 6 C 1.30506 * 108.89686 * 0.42822 * 5 3 2 7 7 Br 1.89107 * 125.99964 * 179.75075 * 6 5 3 8 8 C 1.38063 * 126.28185 * 180.30897 * 2 1 3 9 9 C 1.47392 * 126.42123 * 0.02562 * 8 2 1 10 10 O 1.21635 * 119.99552 * 90.00007 * 9 8 2 11 11 N 1.34773 * 119.99960 * 269.99703 * 9 8 2 12 12 C 1.40562 * 119.99866 * 180.02562 * 11 9 8 13 13 C 1.40660 * 126.08453 * 359.68455 * 12 11 9 14 14 N 1.30907 * 108.38986 * 179.88148 * 13 12 11 15 15 N 1.40075 * 108.40652 * 0.38352 * 14 13 12 16 16 C 1.37318 * 126.06563 * 179.73098 * 15 14 13 17 17 H 1.08004 * 119.99823 * 180.02562 * 16 15 14 18 18 C 1.38980 * 120.00244 * 0.03168 * 16 15 14 19 19 N 1.31297 * 120.00250 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00016 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47154 * 59.99731 * 20 18 16 22 22 H 1.48498 * 109.47395 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47087 * 299.99753 * 20 18 16 24 24 C 1.35688 * 126.08390 * 180.02562 * 12 11 9 25 25 H 1.09002 * 109.47152 * 269.69004 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69104 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69085 * 1 2 3 28 28 H 0.96997 * 119.99967 * 359.97438 * 11 9 8 29 29 H 1.08002 * 125.80094 * 0.02562 * 13 12 11 30 30 H 0.96997 * 120.00067 * 180.02562 * 19 18 16 31 31 H 1.08003 * 126.24124 * 359.92346 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3015 1.0823 0.0000 4 1 2.0023 2.0049 -0.0005 5 7 3.6341 0.6551 0.0035 6 6 3.6597 -0.6497 -0.0036 7 35 5.2111 -1.7310 -0.0094 8 6 2.3240 -1.1129 -0.0060 9 6 1.8858 -2.5202 -0.0141 10 8 1.7054 -3.0948 -1.0709 11 7 1.6851 -3.1702 1.1493 12 6 1.2677 -4.5124 1.1416 13 6 1.0163 -5.2952 0.0003 14 7 0.6503 -6.4897 0.3912 15 7 0.6449 -6.5144 1.7918 16 6 0.3111 -7.5880 2.5801 17 1 0.3406 -7.4979 3.6560 18 6 -0.0644 -8.7907 1.9936 19 7 -0.1007 -8.9003 0.6857 20 14 -0.5178 -10.2515 3.0661 21 1 -1.6751 -9.8945 3.9253 22 1 -0.8792 -11.4053 2.2040 23 1 0.6401 -10.6157 3.9215 24 6 1.0293 -5.2815 2.2337 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 1.8294 -2.7120 1.9920 29 1 1.1115 -4.9672 -1.0243 30 1 -0.3632 -9.7396 0.2764 31 1 1.1268 -4.9744 3.2645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417621146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:46 Heat of formation + Delta-G solvation = 100.535042 kcal Electronic energy + Delta-G solvation = -20368.876995 eV Core-core repulsion = 16927.401682 eV Total energy + Delta-G solvation = -3441.475313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.007 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.66263 -41.55299 -39.84390 -35.85917 -34.90880 -34.34685 -32.94803 -32.16422 -31.39048 -29.63140 -28.41632 -26.74684 -24.04824 -22.75368 -22.55354 -21.34863 -20.87671 -19.33894 -18.80043 -17.53475 -17.27837 -17.00765 -16.22849 -15.90576 -15.72680 -15.50171 -15.05240 -14.92277 -14.72162 -14.09119 -13.92708 -13.44932 -13.29815 -13.23645 -12.83893 -12.83075 -12.43980 -12.39628 -12.11457 -11.79296 -11.48619 -10.95926 -10.91324 -10.73214 -10.49253 -10.04356 -9.88847 -8.48542 -8.42252 -6.19231 -0.00830 0.42095 0.91689 1.21600 1.42919 1.50264 1.58906 1.75631 1.89824 2.12937 2.41181 2.55592 2.97253 3.13846 3.48851 3.72814 3.96636 4.11447 4.49591 4.60228 4.64083 4.70601 4.77060 5.05109 5.07923 5.14774 5.34244 5.49739 5.94001 6.00444 6.22705 6.36471 6.75613 6.78693 7.38855 7.51675 7.73792 8.56867 Molecular weight = 339.01amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.003197 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.403066 B = 8757.289466 C = 9560.013266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.166 3.834 3 N -0.426 5.426 4 H 0.466 0.534 5 N -0.273 5.273 6 C 0.098 3.902 7 Br 0.041 6.959 8 C -0.281 4.281 9 C 0.588 3.412 10 O -0.565 6.565 11 N -0.601 5.601 12 C -0.041 4.041 13 C -0.056 4.056 14 N -0.309 5.309 15 N -0.167 5.167 16 C -0.355 4.355 17 H 0.141 0.859 18 C -0.005 4.005 19 N -0.825 5.825 20 Si 1.017 2.983 21 H -0.253 1.253 22 H -0.279 1.279 23 H -0.255 1.255 24 C -0.077 4.077 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.417 0.583 29 H 0.167 0.833 30 H 0.276 0.724 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.805 20.534 4.172 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.031 3.969 3 N -0.138 5.138 4 H 0.317 0.683 5 N -0.098 5.098 6 C -0.147 4.147 7 Br 0.122 6.878 8 C -0.298 4.298 9 C 0.374 3.626 10 O -0.444 6.444 11 N -0.245 5.245 12 C -0.147 4.147 13 C -0.231 4.231 14 N -0.141 5.141 15 N 0.064 4.936 16 C -0.486 4.486 17 H 0.158 0.842 18 C -0.217 4.217 19 N -0.453 5.453 20 Si 0.836 3.164 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.179 1.179 24 C -0.227 4.227 25 H 0.133 0.867 26 H 0.093 0.907 27 H 0.136 0.864 28 H 0.253 0.747 29 H 0.184 0.816 30 H 0.085 0.915 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.561 19.508 2.881 20.241 hybrid contribution -0.461 0.229 0.536 0.743 sum 4.100 19.738 3.417 20.446 Atomic orbital electron populations 1.20822 0.83128 1.05870 1.06123 1.21786 0.95965 0.85092 0.94016 1.45975 1.02222 1.09479 1.56087 0.68292 1.77180 0.98223 1.10011 1.24397 1.23883 0.93082 0.93073 1.04702 1.96840 1.30507 1.62849 1.97593 1.19662 0.91910 0.93518 1.24703 1.17317 0.77253 0.84979 0.83076 1.90681 1.52616 1.68505 1.32564 1.42367 1.64422 1.08768 1.08912 1.17273 1.17898 0.86682 0.92885 1.24147 1.07478 0.92000 0.99461 1.78160 1.26780 1.19178 0.90030 1.44810 1.37302 1.07642 1.03867 1.20565 1.47762 0.88785 0.91468 0.84215 1.26835 0.94976 1.02429 0.97411 1.70394 1.36368 1.26931 1.11565 0.84678 0.79693 0.74763 0.77225 1.17669 1.20415 1.17883 1.21962 1.14863 0.87047 0.98869 0.86681 0.90715 0.86415 0.74693 0.81621 0.91469 0.79587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.25 71.24 0.73 -0.52 16 2 C 0.17 3.14 7.29 42.15 0.31 3.45 16 3 N -0.43 -6.61 7.29 -46.78 -0.34 -6.95 16 4 H 0.47 2.93 8.96 -213.43 -1.91 1.02 16 5 N -0.27 -6.45 12.64 -52.20 -0.66 -7.11 16 6 C 0.10 2.70 7.76 85.66 0.66 3.37 16 7 Br 0.04 1.13 33.93 -20.37 -0.69 0.44 16 8 C -0.28 -7.87 5.88 -20.14 -0.12 -7.99 16 9 C 0.59 21.21 7.08 86.65 0.61 21.82 16 10 O -0.57 -25.57 14.25 -4.14 -0.06 -25.63 16 11 N -0.60 -21.11 5.46 -306.88 -1.68 -22.79 16 12 C -0.04 -1.88 6.90 37.74 0.26 -1.62 16 13 C -0.06 -3.02 10.85 85.42 0.93 -2.10 16 14 N -0.31 -18.64 10.40 -56.46 -0.59 -19.22 16 15 N -0.17 -9.23 3.74 -190.01 -0.71 -9.94 16 16 C -0.35 -18.68 10.25 84.01 0.86 -17.82 16 17 H 0.14 6.34 7.83 -2.91 -0.02 6.32 16 18 C 0.00 -0.25 5.50 84.95 0.47 0.21 16 19 N -0.82 -47.61 11.81 21.66 0.26 -47.35 16 20 Si 1.02 38.43 29.55 68.60 2.03 40.46 16 21 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 22 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 24 C -0.08 -3.52 11.49 83.38 0.96 -2.56 16 25 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.37 7.96 -2.39 -0.02 1.35 16 27 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.42 11.29 8.81 -92.71 -0.82 10.48 16 29 H 0.17 9.17 5.91 -2.91 -0.02 9.16 16 30 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.19 6.68 8.06 -2.91 -0.02 6.66 16 Total: -1.00 -79.40 305.76 1.73 -77.67 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -1.50 Total: 24.19 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 5.67 Total: -3.76 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.72 Total: -113.36 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.06 Total: -25.63 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 35 Polarization: 1.13 SS G_CDS: -0.69 Total: 0.44 kcal Total: -79.40 1.73 -77.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417621146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.208 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds