Wall clock time and date at job start Tue Mar 31 2020 22:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47158 * 2 1 4 4 C 1.50700 * 109.47533 * 239.99798 * 2 1 3 5 5 H 1.07995 * 120.00035 * 243.71115 * 4 2 1 6 6 C 1.37882 * 119.99823 * 63.70064 * 4 2 1 7 7 N 1.31513 * 119.99860 * 7.48305 * 6 4 2 8 8 Si 1.86793 * 119.99927 * 187.47845 * 6 4 2 9 9 H 1.48496 * 109.47134 * 94.98705 * 8 6 4 10 10 H 1.48500 * 109.47111 * 214.98481 * 8 6 4 11 11 H 1.48496 * 109.47401 * 334.98398 * 8 6 4 12 12 N 1.46905 * 109.47055 * 119.99671 * 2 1 3 13 13 C 1.46901 * 110.99752 * 58.95457 * 12 2 1 14 14 C 1.38578 * 110.99806 * 294.99917 * 12 2 1 15 15 N 1.31216 * 126.47838 * 7.30650 * 14 12 2 16 16 N 1.28533 * 109.86115 * 180.25506 * 15 14 12 17 17 C 1.30290 * 110.05051 * 359.74064 * 16 15 14 18 18 C 1.50696 * 126.34356 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47471 * 245.51990 * 18 17 16 20 20 C 1.52999 * 109.47299 * 5.52509 * 18 17 16 21 21 C 1.53011 * 109.47270 * 125.52126 * 18 17 16 22 22 N 1.36456 * 126.47067 * 187.12951 * 14 12 2 23 23 C 1.46502 * 127.13610 * 0.02562 * 22 14 12 24 24 C 1.52999 * 109.47039 * 270.90248 * 23 22 14 25 25 C 1.53004 * 109.46979 * 178.95008 * 24 23 22 26 26 C 1.52997 * 109.47534 * 59.99625 * 25 24 23 27 27 C 1.52999 * 109.46979 * 179.97438 * 25 24 23 28 28 O 1.42908 * 109.46887 * 299.99726 * 25 24 23 29 29 H 1.09004 * 109.47040 * 64.25734 * 1 2 3 30 30 H 1.09004 * 109.47754 * 184.26211 * 1 2 3 31 31 H 1.09004 * 109.47105 * 304.26443 * 1 2 3 32 32 H 0.97000 * 120.00020 * 179.97438 * 7 6 4 33 33 H 1.08995 * 109.46978 * 285.31583 * 13 12 2 34 34 H 1.09003 * 109.47081 * 45.31216 * 13 12 2 35 35 H 1.08996 * 109.46716 * 165.31021 * 13 12 2 36 36 H 1.09005 * 109.47078 * 54.05784 * 19 18 17 37 37 H 1.09000 * 109.47304 * 174.05614 * 19 18 17 38 38 H 1.08999 * 109.47054 * 294.05451 * 19 18 17 39 39 H 1.08992 * 109.47553 * 59.99504 * 20 18 17 40 40 H 1.08999 * 109.47329 * 180.02562 * 20 18 17 41 41 H 1.09001 * 109.47087 * 299.99622 * 20 18 17 42 42 H 1.08993 * 109.46712 * 69.44057 * 21 18 17 43 43 H 1.08998 * 109.47473 * 189.44688 * 21 18 17 44 44 H 1.09003 * 109.46190 * 309.44759 * 21 18 17 45 45 H 1.08997 * 109.47140 * 150.90097 * 23 22 14 46 46 H 1.09006 * 109.47017 * 30.89715 * 23 22 14 47 47 H 1.08997 * 109.47200 * 58.95002 * 24 23 22 48 48 H 1.08994 * 109.47122 * 298.94409 * 24 23 22 49 49 H 1.09003 * 109.46594 * 59.99672 * 26 25 24 50 50 H 1.08997 * 109.47469 * 179.97438 * 26 25 24 51 51 H 1.08999 * 109.47385 * 300.00508 * 26 25 24 52 52 H 1.08997 * 109.47200 * 59.99994 * 27 25 24 53 53 H 1.09000 * 109.46730 * 179.97438 * 27 25 24 54 54 H 1.08994 * 109.47122 * 299.99401 * 27 25 24 55 55 H 0.96696 * 114.00019 * 300.00084 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6029 -1.6221 -1.1324 6 6 1.7634 -0.1965 -2.4813 7 7 1.1986 0.9853 -2.5991 8 14 2.2013 -1.1789 -4.0085 9 1 1.0144 -1.9493 -4.4588 10 1 2.6285 -0.2523 -5.0875 11 1 3.3094 -2.1160 -3.6935 12 7 2.0196 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2461 14 6 1.6696 -0.0021 2.3490 15 7 0.8829 1.0455 2.4208 16 7 0.7815 1.4327 3.6422 17 6 1.4873 0.6581 4.4164 18 6 1.6297 0.7800 5.9117 19 6 3.0782 1.1290 6.2594 20 6 0.7021 1.8836 6.4240 21 6 1.2533 -0.5490 6.5699 22 7 2.0755 -0.2856 3.6206 23 6 2.9624 -1.3718 4.0445 24 6 2.1318 -2.6218 4.3419 25 6 3.0606 -3.7639 4.7594 26 6 3.8372 -3.3573 6.0133 27 6 2.2299 -5.0137 5.0574 28 8 3.9785 -4.0427 3.7002 29 1 -0.3633 0.4464 -0.9257 30 1 -0.3635 -1.0248 0.0764 31 1 -0.3633 0.5786 0.8493 32 1 1.0097 1.3470 -3.4791 33 1 0.4743 -2.0781 1.5241 34 1 1.6460 -2.5367 0.2652 35 1 2.0997 -2.6399 1.9832 36 1 3.3802 2.0189 5.7069 37 1 3.1590 1.3208 7.3293 38 1 3.7275 0.2961 5.9895 39 1 -0.3298 1.6349 6.1764 40 1 0.8054 1.9721 7.5055 41 1 0.9702 2.8303 5.9551 42 1 2.0114 -1.2969 6.3379 43 1 1.1932 -0.4154 7.6500 44 1 0.2870 -0.8813 6.1906 45 1 3.5012 -1.0713 4.9431 46 1 3.6753 -1.5901 3.2493 47 1 1.5786 -2.9115 3.4485 48 1 1.4318 -2.4092 5.1498 49 1 3.1370 -3.1445 6.8212 50 1 4.4984 -4.1710 6.3110 51 1 4.4288 -2.4667 5.8015 52 1 1.6764 -5.3035 4.1643 53 1 2.8916 -5.8274 5.3544 54 1 1.5302 -4.8007 5.8654 55 1 3.5549 -4.3075 2.8722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434592108.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:26 Heat of formation + Delta-G solvation = 13.521240 kcal Electronic energy + Delta-G solvation = -32878.379824 eV Core-core repulsion = 28951.441215 eV Total energy + Delta-G solvation = -3926.938610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.01321 -39.77048 -39.23607 -37.75296 -36.10116 -34.68946 -33.60122 -31.00232 -30.46390 -30.37203 -28.33403 -28.26623 -28.12117 -27.25201 -26.85659 -25.27557 -23.59858 -23.05478 -21.32522 -20.92658 -20.25261 -18.48631 -17.88755 -17.64215 -17.18391 -16.90789 -16.56298 -16.37872 -16.14572 -15.56321 -15.31875 -15.13371 -15.04982 -14.77178 -14.54296 -14.32212 -14.06284 -13.57224 -13.34698 -13.22838 -13.20658 -13.07274 -13.00554 -12.99050 -12.89457 -12.76810 -12.67556 -12.62257 -12.52738 -12.45892 -12.22974 -12.16373 -12.00688 -11.93954 -11.84709 -11.71085 -11.47826 -11.37458 -11.14429 -10.88370 -10.68596 -10.50993 -10.44114 -9.02028 -8.15086 -6.27084 0.90906 1.36069 1.44707 1.45341 1.56400 1.95961 2.41709 3.00452 3.17005 3.21675 3.35332 3.53019 3.72206 3.74910 3.87472 3.96304 3.99273 4.08081 4.22278 4.26738 4.30188 4.37415 4.44603 4.52265 4.59506 4.68080 4.71508 4.78723 4.80968 4.83160 4.85927 4.91748 4.95969 4.97612 4.99818 5.02685 5.04165 5.06259 5.07593 5.13090 5.19480 5.26627 5.30458 5.35940 5.39486 5.45422 5.49837 5.56067 5.63842 5.88053 6.09893 6.17299 6.62019 6.82404 6.83673 7.40805 7.94271 8.94427 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.004181 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.125961 B = 6695.179210 C = 8566.944057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.242 3.758 3 H 0.000 1.000 4 C -0.524 4.524 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.967 3.033 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.260 1.260 12 N -0.455 5.455 13 C 0.032 3.968 14 C 0.361 3.639 15 N -0.368 5.368 16 N -0.332 5.332 17 C 0.183 3.817 18 C 0.025 3.975 19 C -0.142 4.142 20 C -0.126 4.126 21 C -0.149 4.149 22 N -0.471 5.471 23 C 0.107 3.893 24 C -0.175 4.175 25 C 0.136 3.864 26 C -0.148 4.148 27 C -0.175 4.175 28 O -0.574 6.574 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.021 0.979 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.040 0.960 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.097 0.903 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.047 0.953 45 H 0.119 0.881 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.059 0.941 53 H 0.069 0.931 54 H 0.078 0.922 55 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 -12.196 24.147 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.136 3.864 3 H 0.018 0.982 4 C -0.562 4.562 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.792 3.208 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.184 1.184 12 N -0.178 5.178 13 C -0.115 4.115 14 C 0.003 3.997 15 N -0.211 5.211 16 N -0.170 5.170 17 C -0.086 4.086 18 C 0.022 3.978 19 C -0.200 4.200 20 C -0.184 4.184 21 C -0.207 4.207 22 N -0.166 5.166 23 C -0.014 4.014 24 C -0.213 4.213 25 C 0.095 3.905 26 C -0.205 4.205 27 C -0.233 4.233 28 O -0.382 6.382 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.066 0.934 45 H 0.137 0.863 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.111 0.889 50 H 0.087 0.913 51 H 0.079 0.921 52 H 0.078 0.922 53 H 0.088 0.912 54 H 0.097 0.903 55 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.766 -10.830 23.964 26.566 hybrid contribution -0.453 -0.760 -1.864 2.064 sum 3.313 -11.591 22.100 25.174 Atomic orbital electron populations 1.22184 0.99430 0.98694 1.00676 1.18897 0.90628 0.92579 0.84297 0.98176 1.21323 1.34843 1.10034 0.90041 0.90828 1.25802 0.95079 0.95526 1.02240 1.70154 1.43789 1.17585 1.24426 0.85402 0.78728 0.78378 0.78285 1.19950 1.21445 1.18363 1.59149 1.56364 1.03862 0.98428 1.22713 0.97325 0.86757 1.04695 1.23138 0.94755 0.96162 0.85597 1.74697 1.18915 1.14775 1.12747 1.73839 1.21625 1.24701 0.96794 1.25430 0.96900 0.89021 0.97255 1.19251 0.98495 0.99135 0.80937 1.22012 0.92700 1.01367 1.03926 1.21691 0.98167 0.96596 1.01916 1.22254 1.01616 0.94267 1.02541 1.46325 1.39223 1.26082 1.04980 1.22235 0.91645 0.84597 1.02936 1.23123 0.99565 0.94618 1.03945 1.21170 0.88640 0.92283 0.88456 1.21944 1.01013 1.02360 0.95186 1.22454 1.00488 0.97333 1.03007 1.86549 1.37214 1.90532 1.23903 0.93533 0.94840 0.93901 0.92879 0.96054 0.89205 0.88746 0.94122 0.87792 0.91830 0.93395 0.88445 0.93691 0.90553 0.88013 0.93391 0.86350 0.89207 0.91050 0.88407 0.88867 0.91341 0.92105 0.92239 0.91155 0.90342 0.76443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.05 8.44 71.98 0.61 -7.45 16 2 C 0.24 13.13 1.93 44.17 0.09 13.22 16 3 H 0.00 0.01 8.04 -2.39 -0.02 0.00 16 4 C -0.52 -28.73 7.77 25.60 0.20 -28.53 16 5 H 0.07 3.81 6.74 -2.91 -0.02 3.79 16 6 C 0.01 0.73 5.19 84.66 0.44 1.17 16 7 N -0.92 -55.46 11.94 21.45 0.26 -55.21 16 8 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 12 N -0.45 -20.32 4.78 -711.01 -3.40 -23.73 16 13 C 0.03 1.12 7.61 127.69 0.97 2.10 16 14 C 0.36 15.64 6.68 260.11 1.74 17.38 16 15 N -0.37 -18.11 9.12 -58.00 -0.53 -18.63 16 16 N -0.33 -14.27 11.51 -49.55 -0.57 -14.84 16 17 C 0.18 5.95 6.33 137.64 0.87 6.82 16 18 C 0.02 0.51 0.76 -52.93 -0.04 0.47 16 19 C -0.14 -2.35 8.34 71.98 0.60 -1.75 16 20 C -0.13 -2.56 7.97 71.98 0.57 -1.99 16 21 C -0.15 -2.05 7.08 71.99 0.51 -1.54 16 22 N -0.47 -15.33 2.81 -514.86 -1.45 -16.77 16 23 C 0.11 2.44 3.92 86.38 0.34 2.78 16 24 C -0.17 -3.02 3.85 30.60 0.12 -2.90 16 25 C 0.14 1.84 1.09 -10.79 -0.01 1.83 16 26 C -0.15 -1.59 8.12 71.98 0.58 -1.01 16 27 C -0.18 -1.91 8.82 71.98 0.63 -1.28 16 28 O -0.57 -9.99 12.29 -148.98 -1.83 -11.82 16 29 H 0.05 2.72 6.58 -2.38 -0.02 2.70 16 30 H 0.03 1.63 6.50 -2.39 -0.02 1.62 16 31 H 0.04 2.33 5.72 -2.38 -0.01 2.31 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.02 0.77 6.96 -2.39 -0.02 0.75 16 34 H 0.09 3.35 6.14 -2.39 -0.01 3.33 16 35 H 0.09 2.56 4.45 -2.39 -0.01 2.55 16 36 H 0.04 0.86 8.14 -2.38 -0.02 0.85 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 0.94 5.72 -2.39 -0.01 0.93 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 41 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 0.86 3.51 -2.39 -0.01 0.85 16 43 H 0.10 0.79 8.12 -2.39 -0.02 0.77 16 44 H 0.05 0.81 7.91 -2.39 -0.02 0.79 16 45 H 0.12 2.11 3.07 -2.39 -0.01 2.10 16 46 H 0.09 2.38 7.47 -2.38 -0.02 2.36 16 47 H 0.07 1.46 5.08 -2.39 -0.01 1.45 16 48 H 0.10 1.50 5.25 -2.39 -0.01 1.49 16 49 H 0.09 0.59 7.56 -2.39 -0.02 0.58 16 50 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.06 0.71 6.45 -2.39 -0.02 0.70 16 52 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 53 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 54 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 55 H 0.39 5.30 8.99 -74.06 -0.67 4.63 16 Total: -1.00 -77.08 399.03 2.96 -74.11 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.24 Total: 22.20 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 8.22 Total: -0.69 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -5.69 Total: -129.18 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -1.83 Total: -11.82 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -77.08 2.96 -74.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434592108.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.633 kcal (2) G-P(sol) polarization free energy of solvation -77.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds