Wall clock time and date at job start Tue Mar 31 2020 22:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47397 * 2 1 4 4 C 1.50706 * 109.47235 * 120.00093 * 2 1 3 5 5 H 1.07998 * 119.99804 * 114.24211 * 4 2 1 6 6 C 1.37872 * 119.99615 * 294.24444 * 4 2 1 7 7 N 1.31517 * 119.99722 * 163.35012 * 6 4 2 8 8 Si 1.86799 * 120.00441 * 343.35053 * 6 4 2 9 9 H 1.48503 * 109.47353 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.46929 * 299.99942 * 8 6 4 11 11 H 1.48500 * 109.47111 * 59.99856 * 8 6 4 12 12 N 1.46905 * 109.46828 * 239.99606 * 2 1 3 13 13 C 1.46895 * 110.99691 * 183.95306 * 12 2 1 14 14 C 1.38572 * 110.99633 * 60.00364 * 12 2 1 15 15 N 1.31216 * 126.47774 * 19.33975 * 14 12 2 16 16 N 1.28529 * 109.86333 * 179.82440 * 15 14 12 17 17 C 1.30287 * 110.05355 * 0.44979 * 16 15 14 18 18 C 1.50699 * 126.35151 * 179.76265 * 17 16 15 19 19 C 1.53004 * 109.46962 * 83.54801 * 18 17 16 20 20 C 1.53004 * 109.46600 * 61.70352 * 19 18 17 21 21 C 1.53001 * 109.46971 * 181.69974 * 19 18 17 22 22 C 1.52997 * 109.47420 * 301.70313 * 19 18 17 23 23 N 1.36451 * 126.46989 * 199.65188 * 14 12 2 24 24 C 1.46501 * 127.13895 * 0.02562 * 23 14 12 25 25 C 1.53002 * 109.47188 * 91.00861 * 24 23 14 26 26 C 1.52995 * 109.46947 * 178.65764 * 25 24 23 27 27 C 1.53001 * 109.46869 * 298.65966 * 25 24 23 28 28 O 1.42905 * 109.46857 * 58.65685 * 25 24 23 29 29 H 1.08998 * 109.47143 * 173.98181 * 1 2 3 30 30 H 1.09007 * 109.46808 * 293.97714 * 1 2 3 31 31 H 1.08999 * 109.47409 * 53.97410 * 1 2 3 32 32 H 0.97002 * 120.00082 * 354.91432 * 7 6 4 33 33 H 1.09001 * 109.47525 * 65.95363 * 13 12 2 34 34 H 1.09006 * 109.47162 * 185.95187 * 13 12 2 35 35 H 1.08997 * 109.47469 * 305.94635 * 13 12 2 36 36 H 1.08998 * 109.47853 * 203.55151 * 18 17 16 37 37 H 1.08998 * 109.47199 * 323.55576 * 18 17 16 38 38 H 1.08999 * 109.47442 * 60.00538 * 20 19 18 39 39 H 1.09006 * 109.46460 * 179.97438 * 20 19 18 40 40 H 1.08996 * 109.46934 * 299.99372 * 20 19 18 41 41 H 1.08997 * 109.47269 * 60.00226 * 21 19 18 42 42 H 1.08997 * 109.46807 * 180.02562 * 21 19 18 43 43 H 1.08999 * 109.47192 * 300.00373 * 21 19 18 44 44 H 1.09002 * 109.47044 * 58.60346 * 22 19 18 45 45 H 1.09001 * 109.46852 * 178.60429 * 22 19 18 46 46 H 1.09004 * 109.46908 * 298.60692 * 22 19 18 47 47 H 1.09006 * 109.47038 * 211.00873 * 24 23 14 48 48 H 1.08996 * 109.47150 * 331.00853 * 24 23 14 49 49 H 1.08997 * 109.47272 * 60.00024 * 26 25 24 50 50 H 1.09006 * 109.47186 * 179.97438 * 26 25 24 51 51 H 1.09002 * 109.47410 * 299.99917 * 26 25 24 52 52 H 1.09003 * 109.47093 * 59.99789 * 27 25 24 53 53 H 1.08997 * 109.46676 * 180.02562 * 27 25 24 54 54 H 1.08997 * 109.47029 * 299.99779 * 27 25 24 55 55 H 0.96703 * 113.99436 * 184.84512 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.5744 -1.6396 1.1341 6 6 1.7999 -0.1742 2.4792 7 7 1.9347 -0.9232 3.5519 8 14 1.2934 1.6159 2.6476 9 1 1.1063 1.9445 4.0837 10 1 2.3521 2.4858 2.0751 11 1 0.0197 1.8407 1.9179 12 7 2.0196 -0.6926 -1.1994 13 6 3.4849 -0.7946 -1.1870 14 6 1.5753 -0.0642 -2.3518 15 7 1.1325 1.1673 -2.4476 16 7 0.8081 1.4213 -3.6651 17 6 1.0139 0.3726 -4.4103 18 6 0.7542 0.2639 -5.8908 19 6 1.9480 0.8321 -6.6610 20 6 3.1998 0.0141 -6.3372 21 6 1.6664 0.7607 -8.1631 22 6 2.1714 2.2896 -6.2527 23 7 1.5099 -0.6112 -3.6002 24 6 1.8915 -1.9704 -3.9914 25 6 0.6756 -2.8928 -3.8824 26 6 1.0657 -4.3051 -4.3229 27 6 0.1897 -2.9268 -2.4320 28 8 -0.3706 -2.4032 -4.7238 29 1 -0.3633 -1.0220 -0.1077 30 1 -0.3633 0.4176 0.9391 31 1 -0.3634 0.6044 -0.8311 32 1 2.1252 -1.8700 3.4616 33 1 3.7973 -1.4411 -0.3669 34 1 3.8279 -1.2155 -2.1323 35 1 3.9171 0.1970 -1.0529 36 1 0.6137 -0.7831 -6.1593 37 1 -0.1434 0.8277 -6.1446 38 1 3.0407 -1.0242 -6.6282 39 1 4.0501 0.4187 -6.8863 40 1 3.4003 0.0650 -5.2671 41 1 0.7746 1.3434 -8.3938 42 1 2.5170 1.1651 -8.7118 43 1 1.5072 -0.2776 -8.4540 44 1 2.3475 2.3430 -5.1783 45 1 3.0370 2.6868 -6.7829 46 1 1.2890 2.8772 -6.5059 47 1 2.2522 -1.9648 -5.0200 48 1 2.6808 -2.3304 -3.3316 49 1 1.8637 -4.6784 -3.6811 50 1 0.1996 -4.9623 -4.2448 51 1 1.4119 -4.2808 -5.3562 52 1 -0.0882 -1.9206 -2.1182 53 1 -0.6762 -3.5842 -2.3543 54 1 0.9877 -3.3002 -1.7902 55 1 -1.1988 -2.8968 -4.6492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460387468.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:46 Heat of formation + Delta-G solvation = 6.449180 kcal Electronic energy + Delta-G solvation = -33320.460699 eV Core-core repulsion = 29393.215422 eV Total energy + Delta-G solvation = -3927.245277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.98950 -39.42456 -39.19394 -38.28604 -35.66509 -34.84932 -32.99929 -32.09750 -31.39969 -28.79503 -28.34805 -28.12057 -28.06268 -27.55632 -26.68937 -26.05900 -23.38802 -22.44972 -21.34537 -20.98154 -19.69879 -19.46028 -18.14178 -17.74301 -17.39272 -17.00169 -16.39876 -16.04466 -15.73974 -15.53496 -15.35933 -15.12221 -15.04405 -14.74286 -14.57133 -14.24246 -14.15715 -14.02610 -13.73440 -13.57994 -13.40372 -13.14429 -13.05828 -12.90699 -12.78253 -12.60722 -12.57577 -12.53478 -12.51579 -12.41450 -12.36966 -12.14710 -12.06281 -11.79646 -11.65320 -11.62092 -11.55056 -11.33387 -10.99541 -10.96565 -10.82387 -10.59999 -10.21172 -9.12763 -8.75516 -6.36342 0.91731 1.38811 1.45661 1.46398 1.67710 1.96549 2.42533 2.89616 3.04004 3.10108 3.44520 3.57395 3.75948 3.85097 3.88701 3.95516 4.00630 4.06915 4.13702 4.28226 4.40912 4.41979 4.54633 4.55911 4.59964 4.65439 4.66665 4.72660 4.75370 4.78167 4.83576 4.89034 4.90637 4.92070 4.94637 5.00487 5.04250 5.07576 5.08619 5.11185 5.16526 5.22909 5.23712 5.33957 5.35426 5.41987 5.46994 5.53079 5.66624 5.81858 5.96841 6.07804 6.54559 6.64603 6.78529 7.35064 7.94002 8.64796 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.004277 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.283495 B = 6544.479930 C = 7641.707932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.216 3.784 3 H -0.006 1.006 4 C -0.584 4.584 5 H 0.047 0.953 6 C 0.000 4.000 7 N -0.931 5.931 8 Si 1.063 2.937 9 H -0.283 1.283 10 H -0.276 1.276 11 H -0.257 1.257 12 N -0.445 5.445 13 C 0.048 3.952 14 C 0.359 3.641 15 N -0.368 5.368 16 N -0.332 5.332 17 C 0.209 3.791 18 C -0.013 4.013 19 C -0.060 4.060 20 C -0.142 4.142 21 C -0.132 4.132 22 C -0.139 4.139 23 N -0.457 5.457 24 C 0.114 3.886 25 C 0.124 3.876 26 C -0.165 4.165 27 C -0.171 4.171 28 O -0.564 6.564 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.259 0.741 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.018 0.982 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.025 0.975 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.122 0.878 48 H 0.107 0.893 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.081 0.919 52 H 0.034 0.966 53 H 0.066 0.934 54 H 0.060 0.940 55 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 -6.437 -26.468 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.108 3.892 3 H 0.012 0.988 4 C -0.622 4.622 5 H 0.065 0.935 6 C -0.201 4.201 7 N -0.567 5.567 8 Si 0.887 3.113 9 H -0.208 1.208 10 H -0.202 1.202 11 H -0.182 1.182 12 N -0.169 5.169 13 C -0.099 4.099 14 C 0.002 3.998 15 N -0.212 5.212 16 N -0.170 5.170 17 C -0.059 4.059 18 C -0.053 4.053 19 C -0.061 4.061 20 C -0.199 4.199 21 C -0.189 4.189 22 C -0.197 4.197 23 N -0.151 5.151 24 C -0.008 4.008 25 C 0.083 3.917 26 C -0.223 4.223 27 C -0.228 4.228 28 O -0.373 6.373 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.037 0.963 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.140 0.860 48 H 0.125 0.875 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.100 0.900 52 H 0.053 0.947 53 H 0.085 0.915 54 H 0.079 0.921 55 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.517 -3.932 -25.079 25.391 hybrid contribution 0.594 -2.136 -0.098 2.219 sum 0.077 -6.068 -25.177 25.898 Atomic orbital electron populations 1.22065 0.97257 0.99893 0.99881 1.19282 0.92464 0.91630 0.85795 0.98790 1.22009 1.39320 1.09583 0.91270 0.93492 1.26541 0.93957 1.07687 0.91905 1.70952 1.46751 1.07455 1.31497 0.83808 0.78468 0.72814 0.76206 1.20842 1.20157 1.18178 1.58957 1.11433 1.48488 0.98063 1.22277 0.84263 1.00667 1.02699 1.22727 1.02164 0.88770 0.86137 1.74571 1.21635 1.12113 1.12857 1.73864 1.21701 1.24276 0.97178 1.25056 0.99444 0.84471 0.96968 1.20294 0.99391 1.04231 0.81343 1.20538 0.93967 0.95043 0.96548 1.21969 0.97426 1.00604 0.99887 1.21786 1.02285 1.02928 0.91929 1.21872 1.01646 0.95936 1.00226 1.46078 1.49383 1.13256 1.06362 1.22331 0.97331 0.77210 1.03948 1.21403 0.87472 0.93616 0.89212 1.22331 1.03379 0.93591 1.02978 1.22432 1.02043 1.01529 0.96838 1.86463 1.24516 1.61284 1.65030 0.93800 0.93265 0.94492 0.93187 0.90072 0.90218 0.96313 0.87429 0.89122 0.90693 0.91455 0.95605 0.92060 0.91607 0.91094 0.95166 0.92116 0.92530 0.85996 0.87460 0.91035 0.90547 0.90025 0.94690 0.91496 0.92091 0.75843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.46 8.49 71.98 0.61 -5.85 16 2 C 0.22 10.68 1.29 44.17 0.06 10.73 16 3 H -0.01 -0.30 6.59 -2.39 -0.02 -0.31 16 4 C -0.58 -32.19 8.13 25.60 0.21 -31.98 16 5 H 0.05 2.73 6.89 -2.91 -0.02 2.71 16 6 C 0.00 -0.01 5.31 84.65 0.45 0.44 16 7 N -0.93 -57.01 13.70 21.45 0.29 -56.72 16 8 Si 1.06 52.71 26.27 68.60 1.80 54.52 16 9 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.26 -12.08 5.71 99.48 0.57 -11.51 16 12 N -0.45 -18.48 4.01 -711.01 -2.85 -21.33 16 13 C 0.05 1.80 8.97 127.69 1.14 2.94 16 14 C 0.36 14.15 4.56 260.12 1.19 15.34 16 15 N -0.37 -16.52 9.92 -58.01 -0.58 -17.09 16 16 N -0.33 -13.17 10.92 -49.54 -0.54 -13.71 16 17 C 0.21 6.41 5.03 137.64 0.69 7.10 16 18 C -0.01 -0.28 4.46 29.85 0.13 -0.14 16 19 C -0.06 -1.06 0.80 -52.18 -0.04 -1.10 16 20 C -0.14 -2.37 7.27 71.98 0.52 -1.85 16 21 C -0.13 -1.57 8.47 71.98 0.61 -0.96 16 22 C -0.14 -3.14 8.15 71.98 0.59 -2.56 16 23 N -0.46 -13.75 2.10 -514.85 -1.08 -14.83 16 24 C 0.11 2.43 4.65 86.38 0.40 2.83 16 25 C 0.12 2.36 1.17 -10.79 -0.01 2.34 16 26 C -0.16 -2.01 8.84 71.98 0.64 -1.37 16 27 C -0.17 -4.52 8.04 71.98 0.58 -3.94 16 28 O -0.56 -10.19 10.98 -148.98 -1.64 -11.83 16 29 H 0.04 2.07 7.48 -2.39 -0.02 2.06 16 30 H 0.05 2.44 4.81 -2.38 -0.01 2.43 16 31 H 0.04 1.78 6.35 -2.39 -0.02 1.76 16 32 H 0.26 15.83 8.73 -92.71 -0.81 15.02 16 33 H 0.08 3.18 6.57 -2.39 -0.02 3.17 16 34 H 0.08 2.33 6.58 -2.38 -0.02 2.31 16 35 H 0.02 0.73 8.12 -2.39 -0.02 0.72 16 36 H 0.11 1.92 6.23 -2.39 -0.01 1.90 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 0.93 7.15 -2.39 -0.02 0.91 16 39 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.02 0.57 6.73 -2.39 -0.02 0.55 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.03 0.90 6.28 -2.39 -0.01 0.89 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.12 1.94 5.63 -2.38 -0.01 1.92 16 48 H 0.11 2.27 6.56 -2.39 -0.02 2.25 16 49 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 51 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.03 1.22 5.54 -2.39 -0.01 1.21 16 53 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 54 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 55 H 0.39 4.68 9.03 -74.06 -0.67 4.02 16 Total: -1.00 -72.97 404.42 3.21 -69.76 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.03 Total: 19.26 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 7.77 Total: -8.02 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -4.76 Total: -123.68 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -1.64 Total: -11.83 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 1.80 Total: 54.52 kcal Total: -72.97 3.21 -69.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460387468.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.206 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds