Wall clock time and date at job start Tue Mar 31 2020 22:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.87283 * 2 1 4 4 C 1.55132 * 110.99534 * 236.15360 * 2 1 3 5 5 C 1.54318 * 103.01973 * 206.25606 * 4 2 1 6 6 N 1.47440 * 107.23625 * 22.28182 * 5 4 2 7 7 C 1.46902 * 111.00004 * 123.25356 * 6 5 4 8 8 C 1.50703 * 109.46930 * 69.87874 * 7 6 5 9 9 O 1.21289 * 120.00065 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00216 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00078 * 179.72674 * 10 8 7 12 12 C 1.52993 * 109.46958 * 180.27535 * 11 10 8 13 13 C 1.52999 * 109.46965 * 179.97438 * 12 11 10 14 14 N 1.46903 * 109.46953 * 179.97438 * 13 12 11 15 15 C 1.46895 * 111.00231 * 294.29631 * 14 13 12 16 16 C 1.53237 * 109.34477 * 172.74672 * 15 14 13 17 17 N 1.47083 * 108.51866 * 53.83467 * 16 15 14 18 18 C 1.36930 * 120.88200 * 128.79420 * 17 16 15 19 19 H 1.08004 * 119.99991 * 206.99321 * 18 17 16 20 20 C 1.38815 * 120.00184 * 26.99249 * 18 17 16 21 21 N 1.31614 * 119.99849 * 17.14536 * 20 18 17 22 22 Si 1.86799 * 119.99938 * 197.14853 * 20 18 17 23 23 H 1.48497 * 109.47320 * 94.12448 * 22 20 18 24 24 H 1.48500 * 109.46973 * 214.12058 * 22 20 18 25 25 H 1.48498 * 109.47188 * 334.12452 * 22 20 18 26 26 C 1.47077 * 118.23421 * 308.81503 * 17 16 15 27 27 C 1.46909 * 110.99862 * 170.00158 * 14 13 12 28 28 C 1.47846 * 108.56270 * 0.99369 * 6 5 4 29 29 H 1.08996 * 109.46891 * 182.39091 * 1 2 3 30 30 H 1.08992 * 109.47372 * 302.39594 * 1 2 3 31 31 H 1.09000 * 109.46718 * 62.39879 * 1 2 3 32 32 H 1.09002 * 110.70725 * 87.87259 * 4 2 1 33 33 H 1.09006 * 110.85476 * 324.70902 * 4 2 1 34 34 H 1.09002 * 109.88913 * 262.87054 * 5 4 2 35 35 H 1.09006 * 109.88941 * 141.69098 * 5 4 2 36 36 H 1.08999 * 109.47441 * 309.87957 * 7 6 5 37 37 H 1.08998 * 109.47043 * 189.87341 * 7 6 5 38 38 H 0.96995 * 119.99827 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.46840 * 300.27183 * 11 10 8 40 40 H 1.08999 * 109.46824 * 60.27165 * 11 10 8 41 41 H 1.09000 * 109.47058 * 299.99515 * 12 11 10 42 42 H 1.09000 * 109.47259 * 59.99772 * 12 11 10 43 43 H 1.09002 * 109.47355 * 299.99444 * 13 12 11 44 44 H 1.09000 * 109.47265 * 59.99841 * 13 12 11 45 45 H 1.09005 * 109.49394 * 292.71457 * 15 14 13 46 46 H 1.09003 * 109.49007 * 52.78721 * 15 14 13 47 47 H 1.08997 * 109.62862 * 294.12930 * 16 15 14 48 48 H 1.08998 * 109.79168 * 173.63593 * 16 15 14 49 49 H 0.97000 * 120.00237 * 180.02562 * 21 20 18 50 50 H 1.09004 * 109.63370 * 291.47507 * 26 17 16 51 51 H 1.09005 * 109.78823 * 170.99013 * 26 17 16 52 52 H 1.09000 * 109.48910 * 307.20742 * 27 14 13 53 53 H 1.08992 * 109.49275 * 67.26169 * 27 14 13 54 54 H 1.08992 * 110.37829 * 94.73182 * 28 6 5 55 55 H 1.09007 * 110.36908 * 217.07412 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0858 -0.8067 -1.2029 5 6 3.4692 -1.2708 -0.7008 6 7 3.4313 -1.2422 0.7729 7 6 3.7611 -2.5593 1.3337 8 6 5.2207 -2.8533 1.1005 9 8 5.9174 -2.0454 0.5235 10 7 5.7518 -4.0140 1.5331 11 6 7.1693 -4.3024 1.3011 12 6 7.5117 -5.6762 1.8808 13 6 8.9919 -5.9777 1.6380 14 7 9.3208 -7.2966 2.1951 15 6 9.1923 -7.2969 3.6584 16 6 9.3651 -8.7263 4.1829 17 7 10.6355 -9.2616 3.6702 18 6 11.5516 -9.8284 4.5155 19 1 12.6007 -9.8200 4.2590 20 6 11.1319 -10.4139 5.7021 21 7 9.8651 -10.7304 5.8677 22 14 12.3650 -10.7525 7.0638 23 1 12.3723 -9.6156 8.0189 24 1 11.9836 -11.9970 7.7786 25 1 13.7192 -10.9142 6.4763 26 6 10.8960 -9.1715 2.2254 27 6 10.6629 -7.7245 1.7781 28 6 2.0849 -0.8064 1.2007 29 1 -0.3633 -1.0267 0.0429 30 1 -0.3634 0.5505 0.8676 31 1 -0.3633 0.4761 -0.9107 32 1 2.1886 -0.1684 -2.0805 33 1 1.4486 -1.6632 -1.4234 34 1 4.2422 -0.5940 -1.0651 35 1 3.6683 -2.2850 -1.0470 36 1 3.1544 -3.3234 0.8477 37 1 3.5570 -2.5597 2.4044 38 1 5.1947 -4.6599 1.9948 39 1 7.3700 -4.2999 0.2297 40 1 7.7792 -3.5407 1.7868 41 1 7.3110 -5.6788 2.9522 42 1 6.9017 -6.4379 1.3951 43 1 9.1922 -5.9754 0.5665 44 1 9.6022 -5.2162 2.1234 45 1 9.9599 -6.6553 4.0911 46 1 8.2066 -6.9240 3.9370 47 1 8.5393 -9.3465 3.8345 48 1 9.3838 -8.7198 5.2727 49 1 9.5717 -11.1392 6.6969 50 1 10.2172 -9.8345 1.6889 51 1 11.9272 -9.4573 2.0178 52 1 10.7437 -7.6618 0.6929 53 1 11.4100 -7.0767 2.2365 54 1 1.4523 -1.6708 1.4020 55 1 2.1544 -0.1719 2.0843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479922057.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:22 Heat of formation + Delta-G solvation = -28.606878 kcal Electronic energy + Delta-G solvation = -29107.491648 eV Core-core repulsion = 25178.726226 eV Total energy + Delta-G solvation = -3928.765422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.04582 -39.84948 -39.44824 -37.01467 -35.77648 -34.31724 -33.63916 -32.04386 -31.63436 -30.71622 -29.07529 -28.09215 -26.24665 -25.37766 -24.42715 -23.97066 -22.25042 -22.18898 -21.38873 -20.89623 -20.77159 -18.73591 -17.89704 -17.45751 -17.37932 -16.92702 -16.70964 -16.28500 -15.94129 -15.84737 -15.48357 -15.31013 -15.21295 -15.07126 -14.73594 -14.56906 -14.50605 -14.06209 -13.95771 -13.64112 -13.37113 -13.35484 -13.07769 -12.96900 -12.84850 -12.80028 -12.63764 -12.52814 -12.29525 -12.14184 -12.06236 -11.94966 -11.88287 -11.77428 -11.58942 -11.51339 -11.48849 -11.30695 -10.83070 -10.59070 -10.07679 -9.28475 -9.26223 -8.67818 -7.88266 -5.32902 1.46175 1.47374 1.56734 1.67012 2.07571 2.50306 2.97580 3.08570 3.27051 3.62592 3.68234 3.68905 3.89722 3.94715 3.96377 4.08946 4.18591 4.28744 4.31203 4.35164 4.37990 4.39164 4.48684 4.49667 4.60074 4.62424 4.64930 4.67900 4.69989 4.71324 4.81513 4.85222 4.87142 4.89713 4.98959 5.03712 5.09542 5.16029 5.21270 5.21899 5.27097 5.30507 5.37971 5.44732 5.47517 5.61068 5.69024 5.93306 6.00515 6.19003 6.28805 6.37613 6.61074 7.13384 7.30539 7.83950 8.38138 9.18530 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027461 B = 0.001522 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.374401 B =18388.089375 C =18992.391234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.076 0.924 4 C -0.135 4.135 5 C 0.053 3.947 6 N -0.538 5.538 7 C 0.035 3.965 8 C 0.507 3.493 9 O -0.570 6.570 10 N -0.722 5.722 11 C 0.132 3.868 12 C -0.113 4.113 13 C 0.059 3.941 14 N -0.540 5.540 15 C 0.050 3.950 16 C 0.185 3.815 17 N -0.615 5.615 18 C -0.266 4.266 19 H 0.066 0.934 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.143 3.857 27 C 0.054 3.946 28 C 0.046 3.954 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.415 0.585 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.028 0.972 45 H 0.014 0.986 46 H 0.087 0.913 47 H 0.000 1.000 48 H 0.055 0.945 49 H 0.251 0.749 50 H 0.017 0.983 51 H 0.059 0.941 52 H 0.095 0.905 53 H 0.021 0.979 54 H 0.064 0.936 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.456 19.732 -12.267 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.173 4.173 5 C -0.075 4.075 6 N -0.263 5.263 7 C -0.096 4.096 8 C 0.294 3.706 9 O -0.448 6.448 10 N -0.375 5.375 11 C 0.007 3.993 12 C -0.151 4.151 13 C -0.069 4.069 14 N -0.265 5.265 15 C -0.079 4.079 16 C 0.059 3.941 17 N -0.339 5.339 18 C -0.396 4.396 19 H 0.083 0.917 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.194 1.194 26 C 0.018 3.982 27 C -0.075 4.075 28 C -0.081 4.081 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.142 0.858 38 H 0.252 0.748 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.047 0.953 45 H 0.032 0.968 46 H 0.105 0.895 47 H 0.018 0.982 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.035 0.965 51 H 0.077 0.923 52 H 0.113 0.887 53 H 0.039 0.961 54 H 0.082 0.918 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.944 20.216 -12.554 30.416 hybrid contribution 0.692 -0.853 1.146 1.587 sum -18.252 19.363 -11.409 28.952 Atomic orbital electron populations 1.21681 0.92870 1.02378 1.02524 1.22274 0.96650 0.99209 0.93774 0.90505 1.22883 0.95305 1.00436 0.98705 1.22676 0.97621 1.00118 0.87062 1.63199 1.28832 1.25511 1.08745 1.22212 0.91601 0.92034 1.03736 1.21084 0.90843 0.80852 0.77831 1.90693 1.63439 1.47857 1.42858 1.45928 1.11461 1.20121 1.60014 1.21114 0.81469 0.96223 1.00492 1.21632 0.96176 0.95464 1.01861 1.22023 0.95761 0.88642 1.00470 1.61906 1.27532 1.27221 1.09800 1.22620 0.99998 0.97787 0.87515 1.20629 0.86212 0.89847 0.97427 1.44402 1.18775 1.68406 1.02338 1.19545 0.89010 1.30130 1.00938 0.91658 1.25773 0.97920 0.98544 1.02233 1.70182 1.16363 1.45521 1.25951 0.85251 0.79003 0.76802 0.79383 1.21302 1.21992 1.19365 1.21130 0.98388 0.94391 0.84339 1.22467 0.88442 0.96352 1.00242 1.23206 0.87038 0.99134 0.98677 0.92171 0.91777 0.91943 0.90312 0.90467 0.92515 0.93656 0.89524 0.85817 0.74818 0.91973 0.92796 0.91100 0.89929 0.89530 0.95331 0.96784 0.89492 0.98151 0.92701 0.94021 0.96481 0.92285 0.88707 0.96072 0.91789 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.30 71.98 0.67 -0.27 16 2 C -0.10 -1.05 3.63 -9.41 -0.03 -1.08 16 3 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.13 -1.57 6.41 31.77 0.20 -1.37 16 5 C 0.05 0.93 5.65 86.65 0.49 1.42 16 6 N -0.54 -9.26 4.85 -890.08 -4.32 -13.58 16 7 C 0.04 0.49 5.03 85.56 0.43 0.92 16 8 C 0.51 10.47 7.48 87.66 0.66 11.13 16 9 O -0.57 -17.15 15.55 -3.06 -0.05 -17.20 16 10 N -0.72 -12.01 5.56 -463.05 -2.57 -14.58 16 11 C 0.13 2.56 5.67 86.38 0.49 3.05 16 12 C -0.11 -2.25 5.26 30.59 0.16 -2.09 16 13 C 0.06 1.45 4.96 86.30 0.43 1.88 16 14 N -0.54 -17.71 4.63 -895.23 -4.15 -21.86 16 15 C 0.05 1.88 5.46 86.38 0.47 2.35 16 16 C 0.18 9.03 5.42 86.35 0.47 9.50 16 17 N -0.62 -31.63 3.03 -698.13 -2.12 -33.75 16 18 C -0.27 -14.89 9.63 84.04 0.81 -14.08 16 19 H 0.07 3.57 7.89 -2.91 -0.02 3.54 16 20 C -0.05 -2.77 4.93 84.86 0.42 -2.35 16 21 N -0.93 -55.43 11.19 21.65 0.24 -55.18 16 22 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C 0.14 6.06 6.69 86.35 0.58 6.64 16 27 C 0.05 1.84 5.62 86.38 0.49 2.33 16 28 C 0.05 0.54 6.15 86.77 0.53 1.07 16 29 H 0.06 0.37 8.10 -2.39 -0.02 0.35 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.75 8.04 -2.38 -0.02 0.73 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.04 0.81 7.31 -2.38 -0.02 0.80 16 36 H 0.09 0.83 7.96 -2.39 -0.02 0.81 16 37 H 0.12 1.20 8.07 -2.39 -0.02 1.18 16 38 H 0.42 4.50 8.47 -92.71 -0.79 3.71 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.45 6.40 -2.39 -0.02 1.44 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 43 H 0.09 1.88 7.97 -2.39 -0.02 1.86 16 44 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 45 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.09 2.80 6.16 -2.39 -0.01 2.79 16 47 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.05 3.01 6.14 -2.39 -0.01 2.99 16 49 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 50 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 51 H 0.06 2.40 7.96 -2.38 -0.02 2.38 16 52 H 0.09 2.61 7.99 -2.39 -0.02 2.60 16 53 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.06 0.55 7.67 -2.39 -0.02 0.53 16 55 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -72.38 421.42 -3.62 -76.00 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.06 Total: 14.03 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 7.26 Total: 19.04 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -12.91 Total: -138.96 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.05 Total: -17.20 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -72.38 -3.62 -76.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479922057.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.392 kcal (2) G-P(sol) polarization free energy of solvation -72.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds