Wall clock time and date at job start Tue Mar 31 2020 22:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47137 * 2 1 4 4 N 1.46896 * 109.47075 * 119.99650 * 2 1 3 5 5 C 1.46903 * 111.00174 * 183.95211 * 4 2 1 6 6 C 1.46897 * 110.99644 * 60.00504 * 4 2 1 7 7 C 1.50707 * 109.47127 * 189.99671 * 6 4 2 8 8 O 1.21283 * 119.99761 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99987 * 179.97438 * 7 6 4 10 10 C 1.47019 * 125.65237 * 359.69549 * 9 7 6 11 11 C 1.54333 * 107.26853 * 178.84985 * 10 9 7 12 12 C 1.55156 * 103.01902 * 338.14047 * 11 10 9 13 13 H 1.09004 * 110.99929 * 277.23267 * 12 11 10 14 14 N 1.46900 * 111.03635 * 153.39827 * 12 11 10 15 15 C 1.46900 * 110.99932 * 192.08382 * 14 12 11 16 16 C 1.53244 * 109.34022 * 172.74594 * 15 14 12 17 17 N 1.47079 * 108.51742 * 53.83017 * 16 15 14 18 18 C 1.36938 * 120.87979 * 128.79674 * 17 16 15 19 19 H 1.07997 * 120.00398 * 206.59747 * 18 17 16 20 20 C 1.38814 * 119.99547 * 26.59007 * 18 17 16 21 21 N 1.31617 * 120.00412 * 17.01807 * 20 18 17 22 22 Si 1.86810 * 119.99899 * 197.01109 * 20 18 17 23 23 H 1.48504 * 109.46736 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47119 * 120.00043 * 22 20 18 25 25 H 1.48497 * 109.47076 * 240.00779 * 22 20 18 26 26 C 1.47076 * 118.24122 * 308.81120 * 17 16 15 27 27 C 1.46905 * 110.99871 * 67.78304 * 14 12 11 28 28 C 1.47427 * 125.64692 * 180.02562 * 9 7 6 29 29 H 1.09003 * 109.47049 * 299.99927 * 1 2 3 30 30 H 1.09001 * 109.46830 * 59.99739 * 1 2 3 31 31 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47675 * 240.00335 * 2 1 3 33 33 H 1.09000 * 109.46736 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47008 * 299.99712 * 3 2 1 35 35 H 1.09003 * 109.47091 * 60.00098 * 3 2 1 36 36 H 1.08998 * 109.46764 * 60.00582 * 5 4 2 37 37 H 1.08993 * 109.47486 * 300.00666 * 5 4 2 38 38 H 1.08999 * 109.47209 * 179.97438 * 5 4 2 39 39 H 1.09002 * 109.47481 * 309.99285 * 6 4 2 40 40 H 1.09003 * 109.47824 * 70.00178 * 6 4 2 41 41 H 1.09007 * 109.88297 * 298.39696 * 10 9 7 42 42 H 1.08997 * 109.88207 * 59.55816 * 10 9 7 43 43 H 1.09006 * 110.84776 * 219.67190 * 11 10 9 44 44 H 1.08996 * 110.66700 * 96.52470 * 11 10 9 45 45 H 1.09003 * 109.49416 * 292.70766 * 15 14 12 46 46 H 1.08998 * 109.49320 * 52.78480 * 15 14 12 47 47 H 1.09002 * 109.62256 * 294.12108 * 16 15 14 48 48 H 1.08997 * 109.62326 * 173.54263 * 16 15 14 49 49 H 0.97004 * 120.00042 * 180.02562 * 21 20 18 50 50 H 1.08995 * 109.62954 * 291.48298 * 26 17 16 51 51 H 1.08997 * 109.62950 * 170.89694 * 26 17 16 52 52 H 1.08996 * 109.49496 * 307.21193 * 27 14 12 53 53 H 1.09003 * 109.49072 * 67.27032 * 27 14 12 54 54 H 1.08998 * 110.36786 * 322.92996 * 28 9 7 55 55 H 1.08993 * 110.36979 * 85.25260 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.4851 -0.6307 1.2816 6 6 1.5487 -2.0834 1.2333 7 6 1.8580 -2.6859 2.5797 8 8 2.4154 -2.0216 3.4276 9 7 1.5142 -3.9624 2.8418 10 6 0.8310 -4.8739 1.9124 11 6 0.6730 -6.2294 2.6333 12 6 1.7732 -6.1746 3.7259 13 1 2.7426 -6.4622 3.3188 14 7 1.4171 -7.0169 4.8755 15 6 2.3007 -6.7490 6.0181 16 6 1.7873 -7.5089 7.2458 17 7 1.6438 -8.9288 6.8900 18 6 2.2021 -9.9081 7.6675 19 1 2.4751 -10.8562 7.2284 20 6 2.4172 -9.6819 9.0201 21 7 1.7995 -8.6914 9.6282 22 14 3.5831 -10.7837 9.9775 23 1 4.1465 -11.8152 9.0699 24 1 4.6865 -9.9653 10.5414 25 1 2.8436 -11.4460 11.0818 26 6 0.8851 -9.2690 5.6768 27 6 1.4341 -8.4398 4.5108 28 6 1.7550 -4.6739 4.1103 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.8029 0.4110 1.3253 37 1 3.9187 -1.1063 0.4020 38 1 3.8209 -1.1505 2.1789 39 1 0.4722 -2.1069 1.0635 40 1 2.0519 -2.6566 0.4547 41 1 -0.1490 -4.4731 1.6533 42 1 1.4309 -5.0030 1.0116 43 1 0.8519 -7.0570 1.9468 44 1 -0.3155 -6.3118 3.0851 45 1 3.3118 -7.0807 5.7816 46 1 2.3084 -5.6797 6.2291 47 1 0.8197 -7.1072 7.5467 48 1 2.5000 -7.4066 8.0641 49 1 1.9502 -8.5332 10.5733 50 1 -0.1691 -9.0365 5.8270 51 1 1.0013 -10.3304 5.4579 52 1 0.8132 -8.5967 3.6289 53 1 2.4572 -8.7478 4.2950 54 1 2.7149 -4.3793 4.5343 55 1 0.9497 -4.4729 4.8168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484703068.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:07 Heat of formation + Delta-G solvation = -3.244035 kcal Electronic energy + Delta-G solvation = -30606.336130 eV Core-core repulsion = 26678.670524 eV Total energy + Delta-G solvation = -3927.665606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.36529 -40.06804 -38.82142 -37.87839 -35.82169 -33.45474 -33.02123 -32.10562 -31.41828 -30.28515 -29.50714 -27.95947 -26.96263 -25.64180 -24.83281 -24.51038 -23.35835 -21.62065 -20.98852 -20.80336 -20.12176 -18.83228 -18.29888 -17.70538 -17.13699 -16.74965 -16.63183 -15.99345 -15.95332 -15.69883 -15.41575 -15.35147 -15.28635 -14.88919 -14.84203 -14.55113 -14.45278 -13.98037 -13.70830 -13.56484 -13.42201 -13.19415 -13.14513 -13.11956 -12.85525 -12.73119 -12.71341 -12.55604 -12.50957 -12.32705 -12.20178 -12.02576 -11.95696 -11.87939 -11.76920 -11.55810 -11.43684 -11.36004 -10.82571 -10.60500 -9.68371 -9.32726 -9.27277 -8.69429 -7.88550 -5.33037 1.44610 1.46441 1.56876 1.60229 1.79287 2.49626 2.88373 3.00618 3.27122 3.34131 3.66784 3.70700 3.76746 3.94587 4.05278 4.07610 4.20005 4.24665 4.26029 4.32847 4.35519 4.39807 4.43396 4.53817 4.55987 4.56729 4.60144 4.65288 4.69426 4.79811 4.83113 4.86824 4.91467 4.92759 4.96025 4.98360 5.03070 5.09020 5.10321 5.17689 5.24118 5.29704 5.32437 5.37637 5.42035 5.60832 5.66354 5.95288 6.11752 6.14762 6.24678 6.36460 6.53453 7.12111 7.16768 7.83510 8.37287 9.18402 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026301 B = 0.002046 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.326004 B =13685.277970 C =14299.577729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.146 4.146 4 N -0.543 5.543 5 C 0.022 3.978 6 C 0.046 3.954 7 C 0.521 3.479 8 O -0.572 6.572 9 N -0.620 5.620 10 C 0.101 3.899 11 C -0.113 4.113 12 C 0.072 3.928 13 H 0.052 0.948 14 N -0.526 5.526 15 C 0.051 3.949 16 C 0.187 3.813 17 N -0.615 5.615 18 C -0.260 4.260 19 H 0.070 0.930 20 C -0.055 4.055 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.143 3.857 27 C 0.058 3.942 28 C 0.120 3.880 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.056 0.944 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.017 0.983 46 H 0.071 0.929 47 H -0.001 1.001 48 H 0.053 0.947 49 H 0.249 0.751 50 H 0.019 0.981 51 H 0.063 0.937 52 H 0.105 0.895 53 H 0.023 0.977 54 H 0.052 0.948 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 13.855 -27.384 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 C -0.203 4.203 4 N -0.269 5.269 5 C -0.126 4.126 6 C -0.084 4.084 7 C 0.311 3.689 8 O -0.451 6.451 9 N -0.355 5.355 10 C -0.020 4.020 11 C -0.151 4.151 12 C -0.038 4.038 13 H 0.070 0.930 14 N -0.252 5.252 15 C -0.078 4.078 16 C 0.061 3.939 17 N -0.339 5.339 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.250 4.250 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.071 4.071 28 C -0.004 4.004 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.145 0.855 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.089 0.911 47 H 0.017 0.983 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.037 0.963 51 H 0.081 0.919 52 H 0.123 0.877 53 H 0.041 0.959 54 H 0.070 0.930 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.048 14.673 -26.279 30.251 hybrid contribution 1.822 -1.087 0.758 2.253 sum -1.226 13.586 -25.521 28.937 Atomic orbital electron populations 1.21932 0.93352 1.02564 1.02609 1.21766 0.96484 0.95273 0.89691 1.21899 1.01132 0.94787 1.02498 1.61673 1.11255 1.13213 1.40758 1.22471 0.86858 1.02768 1.00522 1.22022 1.04206 0.89800 0.92379 1.20916 0.77768 0.79670 0.90593 1.90676 1.43777 1.60681 1.49950 1.48570 1.59275 1.11704 1.15922 1.22329 0.98495 0.88578 0.92643 1.22698 0.99033 0.97203 0.96194 1.22750 0.98258 0.91050 0.91704 0.93045 1.61953 1.52130 1.05941 1.05127 1.22561 0.93375 0.99383 0.92528 1.20573 0.97110 0.82823 0.93387 1.44413 1.60848 1.01993 1.26621 1.19573 1.32996 0.96712 0.89761 0.91236 1.25817 1.01615 1.00247 0.97311 1.70197 1.43963 1.34482 1.09661 0.85203 0.78470 0.78365 0.78389 1.18926 1.21898 1.21870 1.21166 0.93638 0.97268 0.86181 1.22482 0.99358 0.86691 0.98526 1.22002 1.00505 0.91061 0.86832 0.92996 0.90349 0.91735 0.92977 0.92544 0.90386 0.92954 0.90566 0.94909 0.92519 0.85453 0.89814 0.88690 0.88829 0.87609 0.89581 0.96432 0.91071 0.98335 0.92817 0.94147 0.96330 0.91892 0.87684 0.95915 0.92973 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.99 71.98 0.65 -0.84 16 2 C 0.08 0.94 2.68 44.92 0.12 1.06 16 3 C -0.15 -1.71 8.83 71.99 0.64 -1.07 16 4 N -0.54 -10.06 4.37 -901.60 -3.94 -13.99 16 5 C 0.02 0.42 8.75 127.69 1.12 1.54 16 6 C 0.05 0.74 4.45 85.56 0.38 1.12 16 7 C 0.52 12.90 7.54 87.66 0.66 13.56 16 8 O -0.57 -19.79 14.59 -3.04 -0.04 -19.84 16 9 N -0.62 -13.65 3.33 -811.74 -2.70 -16.35 16 10 C 0.10 1.31 6.49 86.73 0.56 1.87 16 11 C -0.11 -1.81 5.62 31.79 0.18 -1.63 16 12 C 0.07 1.78 2.72 46.31 0.13 1.90 16 13 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 14 N -0.53 -17.14 4.53 -861.83 -3.90 -21.05 16 15 C 0.05 2.02 5.43 86.38 0.47 2.49 16 16 C 0.19 9.43 5.42 86.35 0.47 9.90 16 17 N -0.61 -31.46 3.04 -698.13 -2.12 -33.58 16 18 C -0.26 -14.49 9.63 84.03 0.81 -13.68 16 19 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 20 C -0.05 -3.12 4.94 84.86 0.42 -2.70 16 21 N -0.94 -56.79 11.15 21.65 0.24 -56.54 16 22 Si 0.97 45.59 29.59 68.60 2.03 47.62 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 C 0.14 5.81 6.69 86.35 0.58 6.39 16 27 C 0.06 1.84 5.52 86.38 0.48 2.32 16 28 C 0.12 3.30 5.03 86.86 0.44 3.74 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.53 6.20 -2.39 -0.01 0.52 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.67 6.34 -2.39 -0.02 0.66 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 1.36 6.23 -2.39 -0.01 1.35 16 37 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.06 1.47 5.83 -2.39 -0.01 1.46 16 39 H 0.13 1.49 5.83 -2.39 -0.01 1.47 16 40 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 41 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 1.21 7.97 -2.38 -0.02 1.19 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 2.68 6.60 -2.39 -0.02 2.66 16 47 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.05 3.06 6.12 -2.39 -0.01 3.04 16 49 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 50 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 52 H 0.11 2.48 7.11 -2.39 -0.02 2.46 16 53 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.05 1.66 7.76 -2.39 -0.02 1.64 16 55 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 Total: -1.00 -74.13 411.00 -1.51 -75.64 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.84 Total: 12.15 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 8.09 Total: 25.95 kcal Atomic # 7 Polarization: -129.10 SS G_CDS: -12.42 Total: -141.52 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.04 Total: -19.84 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -74.13 -1.51 -75.64 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484703068.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.396 kcal (2) G-P(sol) polarization free energy of solvation -74.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds