Wall clock time and date at job start Tue Mar 31 2020 22:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46797 * 2 1 4 4 N 1.46899 * 109.47116 * 120.00011 * 2 1 3 5 5 C 1.46903 * 110.99968 * 306.04711 * 4 2 1 6 6 C 1.46901 * 111.00008 * 70.00056 * 4 2 1 7 7 C 1.50702 * 109.46943 * 169.99834 * 6 4 2 8 8 O 1.21273 * 120.00230 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99532 * 180.02562 * 7 6 4 10 10 C 1.47016 * 125.65169 * 359.69019 * 9 7 6 11 11 C 1.54317 * 107.27696 * 180.97113 * 10 9 7 12 12 C 1.55156 * 102.86585 * 22.52638 * 11 10 9 13 13 H 1.09001 * 111.00261 * 82.37805 * 12 11 10 14 14 N 1.46898 * 111.03832 * 206.21994 * 12 11 10 15 15 C 1.46904 * 110.99651 * 296.27504 * 14 12 11 16 16 C 1.53236 * 109.33582 * 172.74790 * 15 14 12 17 17 N 1.47081 * 108.52446 * 53.83515 * 16 15 14 18 18 C 1.36929 * 120.88427 * 128.83219 * 17 16 15 19 19 H 1.08003 * 120.00442 * 208.57158 * 18 17 16 20 20 C 1.38810 * 120.00048 * 28.57401 * 18 17 16 21 21 N 1.31621 * 120.00080 * 15.03936 * 20 18 17 22 22 Si 1.86803 * 120.00321 * 195.03229 * 20 18 17 23 23 H 1.48497 * 109.47039 * 89.99669 * 22 20 18 24 24 H 1.48491 * 109.47376 * 210.00372 * 22 20 18 25 25 H 1.48504 * 109.46628 * 330.00152 * 22 20 18 26 26 C 1.47084 * 118.23363 * 308.81110 * 17 16 15 27 27 C 1.46899 * 110.99951 * 171.97777 * 14 12 11 28 28 C 1.47426 * 125.64552 * 180.02562 * 9 7 6 29 29 H 1.09004 * 109.46990 * 299.99490 * 1 2 3 30 30 H 1.08994 * 109.47244 * 59.99738 * 1 2 3 31 31 H 1.08999 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.46842 * 240.00178 * 2 1 3 33 33 H 1.09002 * 109.46862 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47438 * 300.00144 * 3 2 1 35 35 H 1.09004 * 109.46933 * 60.00475 * 3 2 1 36 36 H 1.09000 * 109.46826 * 183.95437 * 5 4 2 37 37 H 1.08994 * 109.47228 * 303.95361 * 5 4 2 38 38 H 1.08994 * 109.47304 * 63.95734 * 5 4 2 39 39 H 1.09000 * 109.47154 * 289.99768 * 6 4 2 40 40 H 1.09004 * 109.47049 * 49.99987 * 6 4 2 41 41 H 1.08997 * 109.88401 * 300.51696 * 10 9 7 42 42 H 1.09002 * 109.88405 * 61.68101 * 10 9 7 43 43 H 1.09006 * 110.92564 * 264.11158 * 11 10 9 44 44 H 1.09005 * 110.74318 * 140.86005 * 11 10 9 45 45 H 1.08996 * 109.49453 * 292.70879 * 15 14 12 46 46 H 1.09000 * 109.49062 * 52.78880 * 15 14 12 47 47 H 1.08997 * 109.63143 * 294.12104 * 16 15 14 48 48 H 1.09007 * 109.78920 * 173.63440 * 16 15 14 49 49 H 0.97002 * 120.00262 * 180.02562 * 21 20 18 50 50 H 1.08998 * 109.62708 * 291.47613 * 26 17 16 51 51 H 1.08996 * 109.78731 * 170.98758 * 26 17 16 52 52 H 1.09000 * 109.49410 * 307.21200 * 27 14 12 53 53 H 1.09005 * 109.49259 * 67.28719 * 27 14 12 54 54 H 1.09002 * 110.36615 * 274.66937 * 28 9 7 55 55 H 1.08999 * 110.36814 * 36.99463 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4343 -0.1149 2.4167 6 6 1.7530 -2.1349 1.1203 7 6 2.4775 -2.8417 2.2368 8 8 3.1495 -2.2064 3.0214 9 7 2.3787 -4.1799 2.3633 10 6 1.5970 -5.0677 1.4903 11 6 1.7624 -6.5036 2.0307 12 6 2.1604 -6.2715 3.5123 13 1 1.2802 -6.0926 4.1298 14 7 2.9435 -7.4009 4.0311 15 6 2.1448 -8.6338 4.0433 16 6 3.0440 -9.8171 4.4164 17 7 3.7257 -9.5053 5.6819 18 6 3.7017 -10.3872 6.7290 19 1 3.7711 -10.0231 7.7435 20 6 3.5883 -11.7493 6.4868 21 7 3.7995 -12.2224 5.2769 22 14 3.1361 -12.9110 7.8781 23 1 1.6593 -13.0521 7.9449 24 1 3.7498 -14.2405 7.6321 25 1 3.6396 -12.3635 9.1634 26 6 4.4342 -8.2211 5.7925 27 6 3.4803 -7.1005 5.3652 28 6 3.0310 -4.9950 3.4042 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.8664 -0.5988 3.2926 37 1 1.6466 0.9537 2.4502 38 1 0.3556 -0.2710 2.4105 39 1 0.6815 -2.3119 1.2132 40 1 2.1026 -2.5170 0.1611 41 1 0.5460 -4.7795 1.5140 42 1 1.9759 -5.0118 0.4698 43 1 2.5528 -7.0317 1.4973 44 1 0.8223 -7.0515 1.9652 45 1 1.3433 -8.5407 4.7761 46 1 1.7168 -8.7996 3.0547 47 1 3.7836 -9.9767 3.6318 48 1 2.4395 -10.7160 4.5381 49 1 3.7199 -13.1742 5.1075 50 1 5.3073 -8.2273 5.1401 51 1 4.7487 -8.0608 6.8237 52 1 4.0208 -6.1544 5.3352 53 1 2.6601 -7.0288 6.0796 54 1 4.0464 -5.2530 3.1031 55 1 3.0404 -4.4606 4.3541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484703069.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:10 Heat of formation + Delta-G solvation = -4.527120 kcal Electronic energy + Delta-G solvation = -30559.617295 eV Core-core repulsion = 26631.896049 eV Total energy + Delta-G solvation = -3927.721245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.36465 -40.09433 -38.93108 -37.90330 -35.81246 -33.46913 -32.88288 -31.82938 -31.61939 -29.98347 -29.00546 -28.03849 -27.57963 -25.95461 -24.87515 -24.46131 -23.35270 -21.61208 -20.83805 -20.68577 -20.07946 -18.82615 -18.30315 -17.63654 -17.00990 -16.74473 -16.69010 -16.23282 -15.70663 -15.64460 -15.50153 -15.25727 -15.18228 -14.88308 -14.74133 -14.61533 -14.51402 -13.98461 -13.92587 -13.73993 -13.55343 -13.30877 -12.98975 -12.92654 -12.85062 -12.70154 -12.55142 -12.53568 -12.45422 -12.34581 -12.16765 -12.05100 -12.02161 -11.87930 -11.80461 -11.61642 -11.44590 -11.36818 -10.82195 -10.59244 -9.67348 -9.32664 -9.22034 -8.66130 -7.87865 -5.34933 1.46705 1.47116 1.56563 1.61775 1.80615 2.50067 2.90926 3.02877 3.27697 3.34525 3.66641 3.70448 3.77549 3.96192 4.05537 4.16454 4.19051 4.22870 4.29145 4.31992 4.34234 4.39211 4.44915 4.51368 4.55709 4.58988 4.61380 4.65699 4.68206 4.78719 4.79691 4.86733 4.87665 4.91452 5.00129 5.01617 5.02162 5.06407 5.09284 5.18826 5.22342 5.28237 5.33454 5.36624 5.40622 5.61264 5.70568 5.97778 6.12820 6.15951 6.24044 6.38274 6.53984 7.14007 7.17864 7.83215 8.38205 9.18650 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.036340 B = 0.001932 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.321093 B =14489.125026 C =14843.726421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.074 3.926 3 C -0.142 4.142 4 N -0.540 5.540 5 C 0.020 3.980 6 C 0.049 3.951 7 C 0.522 3.478 8 O -0.570 6.570 9 N -0.620 5.620 10 C 0.104 3.896 11 C -0.118 4.118 12 C 0.071 3.929 13 H 0.050 0.950 14 N -0.527 5.527 15 C 0.055 3.945 16 C 0.185 3.815 17 N -0.614 5.614 18 C -0.265 4.265 19 H 0.064 0.936 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.145 3.855 27 C 0.055 3.945 28 C 0.123 3.877 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.018 0.982 46 H 0.091 0.909 47 H 0.001 0.999 48 H 0.057 0.943 49 H 0.251 0.749 50 H 0.016 0.984 51 H 0.057 0.943 52 H 0.084 0.916 53 H 0.023 0.977 54 H 0.066 0.934 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.919 23.168 -14.892 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.033 4.033 3 C -0.199 4.199 4 N -0.264 5.264 5 C -0.128 4.128 6 C -0.082 4.082 7 C 0.312 3.688 8 O -0.449 6.449 9 N -0.355 5.355 10 C -0.018 4.018 11 C -0.156 4.156 12 C -0.038 4.038 13 H 0.068 0.932 14 N -0.252 5.252 15 C -0.074 4.074 16 C 0.060 3.940 17 N -0.338 5.338 18 C -0.396 4.396 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.580 5.580 22 Si 0.797 3.203 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.196 1.196 26 C 0.020 3.980 27 C -0.075 4.075 28 C -0.001 4.001 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.117 0.883 45 H 0.037 0.963 46 H 0.110 0.890 47 H 0.019 0.981 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.034 0.966 51 H 0.075 0.925 52 H 0.103 0.897 53 H 0.041 0.959 54 H 0.084 0.916 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.639 23.432 -14.819 29.353 hybrid contribution -1.237 -1.112 1.574 2.290 sum -10.876 22.320 -13.245 28.141 Atomic orbital electron populations 1.22456 0.96358 1.02424 1.02987 1.21848 0.93598 0.95788 0.92075 1.21824 1.01261 0.94582 1.02255 1.61853 1.59840 1.01322 1.03398 1.22477 0.96905 1.00702 0.92671 1.21964 0.99417 0.89078 0.97726 1.20878 0.81272 0.80226 0.86430 1.90666 1.42737 1.65488 1.45982 1.48563 1.49808 1.05895 1.31228 1.22268 0.96706 0.88178 0.94649 1.22704 1.03569 0.96260 0.93068 1.22742 0.94095 0.89732 0.97260 0.93163 1.61933 1.36456 1.02575 1.24236 1.22569 0.94336 0.90141 1.00316 1.20638 0.93065 0.94422 0.85922 1.44378 1.59188 1.17213 1.13029 1.19495 1.45065 0.87511 0.87484 0.91858 1.25829 1.01280 0.98421 0.98884 1.70165 1.53283 1.12663 1.21842 0.85247 0.77790 0.78016 0.79249 1.21043 1.22001 1.19598 1.21084 0.93135 0.85484 0.98344 1.22452 0.97638 0.98603 0.88778 1.21982 0.96584 0.90134 0.91376 0.92633 0.90674 0.92190 0.88991 0.92990 0.90539 0.92906 0.92541 0.90816 0.94574 0.89792 0.85820 0.88963 0.88723 0.89784 0.88329 0.96349 0.89032 0.98136 0.92485 0.93986 0.96633 0.92464 0.89737 0.95918 0.91559 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.44 71.98 0.61 -0.97 16 2 C 0.07 0.86 2.92 44.92 0.13 0.99 16 3 C -0.14 -1.59 9.12 71.98 0.66 -0.94 16 4 N -0.54 -9.40 4.45 -901.62 -4.01 -13.41 16 5 C 0.02 0.37 8.33 127.69 1.06 1.44 16 6 C 0.05 0.73 4.21 85.56 0.36 1.09 16 7 C 0.52 12.26 7.57 87.66 0.66 12.93 16 8 O -0.57 -18.63 14.56 -3.01 -0.04 -18.68 16 9 N -0.62 -13.09 3.33 -811.85 -2.70 -15.79 16 10 C 0.10 1.40 6.48 86.73 0.56 1.96 16 11 C -0.12 -2.10 5.43 31.78 0.17 -1.92 16 12 C 0.07 1.76 2.71 46.30 0.13 1.89 16 13 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 14 N -0.53 -17.21 4.53 -861.93 -3.90 -21.12 16 15 C 0.06 2.01 5.49 86.38 0.47 2.48 16 16 C 0.19 8.93 5.40 86.35 0.47 9.40 16 17 N -0.61 -31.52 3.03 -698.13 -2.12 -33.64 16 18 C -0.27 -14.82 9.62 84.03 0.81 -14.01 16 19 H 0.06 3.47 7.87 -2.91 -0.02 3.45 16 20 C -0.05 -2.72 4.97 84.86 0.42 -2.30 16 21 N -0.93 -55.17 11.17 21.65 0.24 -54.93 16 22 Si 0.97 44.99 29.58 68.60 2.03 47.02 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.15 6.28 6.69 86.35 0.58 6.86 16 27 C 0.05 1.92 5.46 86.38 0.47 2.39 16 28 C 0.12 3.15 5.23 86.85 0.45 3.61 16 29 H 0.05 0.56 6.42 -2.39 -0.02 0.54 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.46 6.91 -2.39 -0.02 0.45 16 32 H 0.09 0.90 7.93 -2.39 -0.02 0.88 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 0.63 6.47 -2.39 -0.02 0.61 16 36 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 37 H 0.07 1.24 6.30 -2.39 -0.02 1.23 16 38 H 0.04 0.55 6.46 -2.39 -0.02 0.54 16 39 H 0.08 0.93 7.06 -2.39 -0.02 0.91 16 40 H 0.12 1.32 7.93 -2.39 -0.02 1.31 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.10 1.44 7.94 -2.38 -0.02 1.43 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.09 2.78 6.93 -2.39 -0.02 2.76 16 47 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.06 3.07 6.20 -2.38 -0.01 3.06 16 49 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 50 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 51 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 52 H 0.08 2.62 6.73 -2.39 -0.02 2.60 16 53 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 54 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 55 H 0.06 1.68 7.74 -2.39 -0.02 1.66 16 Total: -1.00 -71.46 408.81 -1.64 -73.10 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.84 Total: 12.57 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 8.02 Total: 24.88 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -12.49 Total: -138.89 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.04 Total: -18.68 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -71.46 -1.64 -73.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484703069.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.573 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds