Wall clock time and date at job start Tue Mar 31 2020 22:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99676 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99652 * 3 2 1 6 6 H 1.48499 * 109.47283 * 149.99840 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21623 * 120.00244 * 359.72094 * 14 13 12 16 16 C 1.47169 * 119.99709 * 179.72413 * 14 13 12 17 17 C 1.33792 * 124.64906 * 179.72109 * 16 14 13 18 18 C 1.40078 * 115.50454 * 179.79005 * 17 16 14 19 19 C 1.40284 * 112.68357 * 0.48528 * 18 17 16 20 20 C 1.39685 * 119.11084 * 179.73969 * 19 18 17 21 21 N 1.31387 * 120.63502 * 0.02908 * 20 19 18 22 22 C 1.32257 * 122.06799 * 359.97046 * 21 20 19 23 23 C 1.36218 * 121.55494 * 359.97438 * 22 21 20 24 24 Cl 1.73607 * 120.34464 * 180.02562 * 23 22 21 25 25 S 1.75532 * 124.64887 * 0.02562 * 16 14 13 26 26 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 28 28 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 29 29 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 30 30 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 31 31 H 1.08003 * 122.24759 * 359.97438 * 17 16 14 32 32 H 1.07998 * 119.68369 * 179.97438 * 20 19 18 33 33 H 1.07998 * 119.22304 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5509 -7.4694 -0.0035 16 6 2.7031 -8.3657 -0.0092 17 6 2.3608 -9.6591 -0.0091 18 6 3.4288 -10.5656 -0.0197 19 6 4.6788 -9.9289 -0.0174 20 6 5.8382 -10.7080 -0.0216 21 7 5.7634 -12.0197 -0.0280 22 6 4.6045 -12.6569 -0.0303 23 6 3.4206 -11.9832 -0.0256 24 17 1.9173 -12.8516 -0.0281 25 16 4.4491 -8.1858 -0.0092 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3907 -0.0002 28 1 0.6169 -4.9209 -0.8887 29 1 0.6175 -4.9205 0.8913 30 1 3.1496 -5.7992 0.0012 31 1 1.3304 -9.9826 -0.0045 32 1 6.8054 -10.2275 -0.0203 33 1 4.5966 -13.7369 -0.0353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539456883.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:54 Heat of formation + Delta-G solvation = -22.189439 kcal Electronic energy + Delta-G solvation = -22504.808366 eV Core-core repulsion = 18682.899126 eV Total energy + Delta-G solvation = -3821.909240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.01171 -39.84529 -38.28770 -37.11067 -36.52563 -34.65590 -33.85622 -31.66832 -31.50105 -31.05974 -28.14999 -25.60496 -24.73546 -24.13174 -22.05778 -20.55628 -19.75453 -19.03121 -18.16606 -17.57628 -16.95399 -16.77472 -15.73052 -15.67264 -15.59737 -15.34437 -15.11234 -14.65078 -14.44234 -14.22013 -14.06611 -13.75008 -13.40099 -12.66977 -12.52749 -12.45499 -12.35000 -12.04585 -11.83382 -11.69738 -11.34495 -11.17907 -10.51070 -10.40511 -10.30755 -10.22694 -10.12672 -9.71042 -9.57287 -9.07336 -8.74623 -8.33923 -8.18185 -6.58421 -4.00752 -0.36095 0.32749 0.81900 1.22179 1.48276 1.59864 2.90387 2.90985 3.06800 3.11230 3.18528 3.23829 3.64132 3.91601 3.95229 4.05205 4.15727 4.42057 4.55604 4.70443 4.73401 5.01807 5.09752 5.22888 5.48951 5.60413 5.75174 5.80027 5.80072 5.93069 6.35244 7.25067 7.39571 7.42550 7.82858 8.03264 8.36274 8.97023 9.30288 9.77467 10.58203 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.028345 B = 0.002136 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.583322 B =13105.891294 C =14078.296365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.545 5.545 10 C 0.425 3.575 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.696 5.696 14 C 0.582 3.418 15 O -0.524 6.524 16 C -0.191 4.191 17 C -0.059 4.059 18 C -0.036 4.036 19 C -0.197 4.197 20 C 0.167 3.833 21 N -0.454 5.454 22 C 0.093 3.907 23 C -0.043 4.043 24 Cl -0.042 7.042 25 S 0.199 5.801 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.410 0.590 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -22.479 -0.033 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.210 3.790 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.350 5.350 14 C 0.365 3.635 15 O -0.402 6.402 16 C -0.312 4.312 17 C -0.091 4.091 18 C -0.053 4.053 19 C -0.317 4.317 20 C -0.003 4.003 21 N -0.163 5.163 22 C -0.057 4.057 23 C -0.074 4.074 24 Cl -0.013 7.013 25 S 0.465 5.535 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.249 0.751 31 H 0.182 0.818 32 H 0.190 0.810 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.926 -21.729 -0.021 23.129 hybrid contribution -1.707 0.174 -0.018 1.716 sum 6.219 -21.555 -0.039 22.434 Atomic orbital electron populations 1.69609 1.06043 1.28670 1.48938 1.25348 0.95682 1.00018 0.96611 0.85798 0.79244 0.80367 0.78550 1.20201 1.20749 1.19259 1.19739 0.93500 0.81891 1.48431 0.87574 1.41784 1.09528 1.04442 1.62215 1.19637 0.88287 0.84886 0.86142 1.90504 1.13607 1.86702 1.57581 1.21071 0.91599 0.85398 1.03850 1.45580 1.11840 1.04365 1.73191 1.16945 0.87144 0.81706 0.77693 1.90837 1.14893 1.84344 1.50110 1.24086 0.98167 0.97918 1.11016 1.20073 1.00818 0.89991 0.98238 1.18049 0.92543 0.92523 1.02173 1.24234 0.97794 1.00012 1.09633 1.22492 0.96566 0.88540 0.92731 1.67878 1.27100 1.09360 1.11968 1.22190 0.85522 1.01087 0.96912 1.21690 0.89647 0.90638 1.05442 1.98405 1.31037 1.75344 1.96500 1.84587 0.97993 0.97627 1.73264 0.91486 0.76966 0.89209 0.89202 0.75124 0.81836 0.80969 0.81317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.26 13.05 55.50 0.72 -22.54 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.05 29.55 -169.99 -5.02 15.02 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.31 -8.09 9.68 -14.93 -0.14 -8.23 16 8 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -13.05 5.29 -10.96 -0.06 -13.11 16 10 C 0.42 9.35 7.85 -10.98 -0.09 9.26 16 11 O -0.60 -14.70 15.24 5.55 0.08 -14.62 16 12 C 0.11 1.88 6.15 -5.19 -0.03 1.85 16 13 N -0.70 -11.19 5.52 -62.64 -0.35 -11.54 16 14 C 0.58 8.95 7.80 -12.63 -0.10 8.85 16 15 O -0.52 -9.32 16.73 5.26 0.09 -9.23 16 16 C -0.19 -2.40 6.33 -37.52 -0.24 -2.64 16 17 C -0.06 -0.69 9.48 -40.45 -0.38 -1.07 16 18 C -0.04 -0.38 5.88 -107.09 -0.63 -1.01 16 19 C -0.20 -1.93 6.54 -38.27 -0.25 -2.18 16 20 C 0.17 1.40 11.24 -17.20 -0.19 1.21 16 21 N -0.45 -4.17 10.33 -13.38 -0.14 -4.31 16 22 C 0.09 0.78 10.85 -18.10 -0.20 0.59 16 23 C -0.04 -0.40 6.37 -38.96 -0.25 -0.65 16 24 Cl -0.04 -0.36 28.69 -51.86 -1.49 -1.85 16 25 S 0.20 2.04 22.26 -107.50 -2.39 -0.35 16 26 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.40 9.09 7.90 -40.82 -0.32 8.77 16 28 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.41 6.51 6.49 -40.82 -0.26 6.25 16 31 H 0.16 1.86 7.92 -52.48 -0.42 1.45 16 32 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -30.34 331.83 -8.35 -38.68 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -2.20 Total: 12.27 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -2.60 Total: 6.57 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.18 Total: -51.50 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.39 Total: -0.35 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.49 Total: -1.85 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.34 -8.35 -38.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539456883.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.495 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds