Wall clock time and date at job start Tue Mar 31 2020 22:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99676 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99652 * 3 2 1 6 6 H 1.48499 * 109.47283 * 149.99840 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21623 * 120.00244 * 359.72094 * 14 13 12 16 16 C 1.47169 * 119.99709 * 179.72413 * 14 13 12 17 17 C 1.33792 * 124.64906 * 179.72109 * 16 14 13 18 18 C 1.40078 * 115.50454 * 179.79005 * 17 16 14 19 19 C 1.40284 * 112.68357 * 0.48528 * 18 17 16 20 20 C 1.39685 * 119.11084 * 179.73969 * 19 18 17 21 21 N 1.31387 * 120.63502 * 0.02908 * 20 19 18 22 22 C 1.32257 * 122.06799 * 359.97046 * 21 20 19 23 23 C 1.36218 * 121.55494 * 359.97438 * 22 21 20 24 24 Cl 1.73607 * 120.34464 * 180.02562 * 23 22 21 25 25 S 1.75532 * 124.64887 * 0.02562 * 16 14 13 26 26 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 28 28 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 29 29 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 30 30 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 31 31 H 1.08003 * 122.24759 * 359.97438 * 17 16 14 32 32 H 1.07998 * 119.68369 * 179.97438 * 20 19 18 33 33 H 1.07998 * 119.22304 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5509 -7.4694 -0.0035 16 6 2.7031 -8.3657 -0.0092 17 6 2.3608 -9.6591 -0.0091 18 6 3.4288 -10.5656 -0.0197 19 6 4.6788 -9.9289 -0.0174 20 6 5.8382 -10.7080 -0.0216 21 7 5.7634 -12.0197 -0.0280 22 6 4.6045 -12.6569 -0.0303 23 6 3.4206 -11.9832 -0.0256 24 17 1.9173 -12.8516 -0.0281 25 16 4.4491 -8.1858 -0.0092 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3907 -0.0002 28 1 0.6169 -4.9209 -0.8887 29 1 0.6175 -4.9205 0.8913 30 1 3.1496 -5.7992 0.0012 31 1 1.3304 -9.9826 -0.0045 32 1 6.8054 -10.2275 -0.0203 33 1 4.5966 -13.7369 -0.0353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001539456883.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:53 Heat of formation + Delta-G solvation = -42.999320 kcal Electronic energy + Delta-G solvation = -22505.710750 eV Core-core repulsion = 18682.899126 eV Total energy + Delta-G solvation = -3822.811624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.023 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.78521 -41.13697 -39.99163 -37.79590 -37.39764 -36.31617 -35.48594 -33.40530 -32.35727 -31.99414 -29.57278 -26.95217 -25.94374 -25.10066 -23.02520 -21.68203 -21.33588 -20.24289 -19.91001 -18.47433 -17.88407 -17.83076 -17.17379 -16.96965 -16.84446 -16.40698 -16.15766 -16.01964 -15.77981 -15.51653 -15.28725 -15.09420 -14.36073 -14.05048 -13.82467 -13.55502 -13.34685 -13.21174 -13.20510 -12.91498 -12.55493 -12.46329 -12.15327 -12.12420 -11.58196 -11.54961 -10.96679 -10.85904 -10.60366 -10.55927 -10.27668 -10.10799 -9.09692 -8.52142 -6.02262 -1.21693 -0.35753 -0.00334 0.40667 0.59521 0.88490 1.35893 1.43204 1.54962 1.69196 1.78311 1.89094 2.28683 2.37811 3.02994 3.14552 3.15213 3.32512 3.37333 3.55060 3.73110 3.90455 4.15260 4.33345 4.36060 4.37656 4.43318 4.66787 4.77990 4.98202 5.16118 5.37848 5.89726 6.16100 6.45850 6.57089 6.77461 7.02234 7.41641 7.91583 8.64533 Molecular weight = 339.02amu Principal moments of inertia in cm(-1) A = 0.028345 B = 0.002136 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.583322 B =13105.891294 C =14078.296365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.088 0.912 9 N -0.557 5.557 10 C 0.431 3.569 11 O -0.623 6.623 12 C 0.119 3.881 13 N -0.699 5.699 14 C 0.587 3.413 15 O -0.552 6.552 16 C -0.217 4.217 17 C -0.048 4.048 18 C -0.053 4.053 19 C -0.198 4.198 20 C 0.171 3.829 21 N -0.462 5.462 22 C 0.098 3.902 23 C -0.048 4.048 24 Cl -0.037 7.037 25 S 0.220 5.780 26 H 0.280 0.720 27 H 0.400 0.600 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.412 0.588 31 H 0.161 0.839 32 H 0.203 0.797 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 -23.490 -0.050 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.106 0.894 9 N -0.192 5.192 10 C 0.218 3.782 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.352 5.352 14 C 0.373 3.627 15 O -0.432 6.432 16 C -0.338 4.338 17 C -0.081 4.081 18 C -0.069 4.069 19 C -0.317 4.317 20 C 0.001 3.999 21 N -0.171 5.171 22 C -0.052 4.052 23 C -0.079 4.079 24 Cl -0.009 7.009 25 S 0.487 5.513 26 H 0.090 0.910 27 H 0.234 0.766 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.250 0.750 31 H 0.178 0.822 32 H 0.219 0.781 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.997 -22.757 -0.039 24.471 hybrid contribution -1.986 0.317 -0.013 2.012 sum 7.011 -22.440 -0.052 23.509 Atomic orbital electron populations 1.69673 1.06995 1.29676 1.49134 1.26126 0.96527 1.02687 0.95746 0.84875 0.77955 0.76513 0.78714 1.19570 1.19751 1.19380 1.19738 0.93009 0.83433 1.50378 0.89438 1.41827 1.09656 1.04555 1.63151 1.20323 0.88123 0.85833 0.83915 1.90482 1.15075 1.87446 1.58118 1.20926 0.91365 0.83326 1.05189 1.45562 1.11609 1.04386 1.73665 1.17191 0.87238 0.81797 0.76506 1.90814 1.16241 1.84739 1.51417 1.23795 0.99241 0.97170 1.13608 1.20129 1.01145 0.89920 0.96895 1.18115 0.92495 0.93132 1.03157 1.24368 0.98101 0.99723 1.09501 1.22997 0.97276 0.88315 0.91332 1.67981 1.27364 1.09655 1.12094 1.22608 0.84916 1.02263 0.95439 1.21758 0.90260 0.90199 1.05733 1.98408 1.30860 1.75110 1.96480 1.84463 0.95796 0.98017 1.73028 0.91046 0.76593 0.87830 0.87823 0.74969 0.82155 0.78070 0.78874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.57 13.05 21.66 0.28 -47.29 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 40.83 29.55 68.60 2.03 42.86 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.34 -18.02 9.68 84.04 0.81 -17.21 16 8 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -27.00 5.29 -306.98 -1.62 -28.62 16 10 C 0.43 19.09 7.85 87.66 0.69 19.78 16 11 O -0.62 -31.00 15.24 -3.07 -0.05 -31.04 16 12 C 0.12 4.11 6.15 85.63 0.53 4.64 16 13 N -0.70 -22.28 5.52 -470.35 -2.60 -24.88 16 14 C 0.59 17.96 7.80 86.59 0.68 18.63 16 15 O -0.55 -19.63 16.73 -4.10 -0.07 -19.70 16 16 C -0.22 -5.38 6.33 23.61 0.15 -5.23 16 17 C -0.05 -1.08 9.48 21.71 0.21 -0.88 16 18 C -0.05 -1.04 5.88 -21.46 -0.13 -1.17 16 19 C -0.20 -3.51 6.54 23.12 0.15 -3.36 16 20 C 0.17 2.44 11.24 85.11 0.96 3.40 16 21 N -0.46 -7.30 10.33 -196.26 -2.03 -9.33 16 22 C 0.10 1.41 10.85 84.16 0.91 2.32 16 23 C -0.05 -0.82 6.37 22.67 0.14 -0.67 16 24 Cl -0.04 -0.59 28.69 -2.72 -0.08 -0.67 16 25 S 0.22 4.28 22.26 -56.49 -1.26 3.02 16 26 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 27 H 0.40 18.56 7.90 -92.71 -0.73 17.83 16 28 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 29 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.41 13.00 6.49 -92.71 -0.60 12.40 16 31 H 0.16 3.65 7.92 -2.91 -0.02 3.62 16 32 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -64.37 331.83 0.06 -64.31 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: -0.11 Total: 31.14 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 5.57 Total: 20.20 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -5.97 Total: -110.12 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.12 Total: -50.74 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.26 Total: 3.02 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -64.37 0.06 -64.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539456883.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.311 kcal (2) G-P(sol) polarization free energy of solvation -64.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds