Wall clock time and date at job start Tue Mar 31 2020 22:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00117 * 2 1 4 4 C 1.52999 * 109.47557 * 180.02562 * 3 2 1 5 5 H 1.09010 * 109.46540 * 304.99846 * 4 3 2 6 6 C 1.52998 * 109.47119 * 64.99282 * 4 3 2 7 7 C 1.52990 * 109.47375 * 184.99899 * 4 3 2 8 8 N 1.46508 * 109.47333 * 174.29873 * 7 4 3 9 9 C 1.36735 * 127.13557 * 275.66223 * 8 7 4 10 10 C 1.50699 * 126.35066 * 0.26639 * 9 8 7 11 11 C 1.52995 * 109.46803 * 265.55433 * 10 9 8 12 12 C 1.53005 * 109.46887 * 173.95673 * 11 10 9 13 13 C 1.53004 * 109.47375 * 293.95773 * 11 10 9 14 14 N 1.30293 * 107.30159 * 179.97438 * 9 8 7 15 15 N 1.28532 * 110.05866 * 0.02562 * 14 9 8 16 16 C 1.31215 * 109.85507 * 359.97438 * 15 14 9 17 17 N 1.38589 * 126.47453 * 180.02562 * 16 15 14 18 18 C 1.46892 * 110.99909 * 249.70295 * 17 16 15 19 19 C 1.46906 * 110.99561 * 13.65550 * 17 16 15 20 20 H 1.09005 * 109.46940 * 55.00144 * 19 17 16 21 21 C 1.52999 * 109.47238 * 295.00284 * 19 17 16 22 22 C 1.50701 * 109.46870 * 174.99847 * 19 17 16 23 23 H 1.07993 * 119.99473 * 94.44909 * 22 19 17 24 24 C 1.37872 * 120.00001 * 274.44443 * 22 19 17 25 25 N 1.31518 * 119.99751 * 185.55069 * 24 22 19 26 26 Si 1.86802 * 120.00319 * 5.54670 * 24 22 19 27 27 H 1.48507 * 109.46694 * 94.96788 * 26 24 22 28 28 H 1.48498 * 109.47422 * 214.96625 * 26 24 22 29 29 H 1.48494 * 109.47048 * 334.97109 * 26 24 22 30 30 H 1.09006 * 109.46798 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47004 * 300.00090 * 1 2 3 32 32 H 1.08994 * 109.47160 * 60.00482 * 1 2 3 33 33 H 1.08998 * 109.47057 * 60.00028 * 3 2 1 34 34 H 1.09004 * 109.46947 * 299.99757 * 3 2 1 35 35 H 1.09002 * 109.47522 * 305.20594 * 6 4 3 36 36 H 1.09002 * 109.47048 * 65.21362 * 6 4 3 37 37 H 1.09002 * 109.46988 * 185.20994 * 6 4 3 38 38 H 1.08997 * 109.47717 * 54.29964 * 7 4 3 39 39 H 1.08999 * 109.47172 * 294.30243 * 7 4 3 40 40 H 1.09000 * 109.46897 * 25.54947 * 10 9 8 41 41 H 1.08995 * 109.46926 * 145.55180 * 10 9 8 42 42 H 1.08999 * 109.47367 * 53.95962 * 11 10 9 43 43 H 1.08994 * 109.46936 * 60.00475 * 12 11 10 44 44 H 1.09003 * 109.46936 * 179.97438 * 12 11 10 45 45 H 1.08989 * 109.47256 * 299.99750 * 12 11 10 46 46 H 1.08993 * 109.47202 * 179.97438 * 13 11 10 47 47 H 1.08999 * 109.47028 * 300.00397 * 13 11 10 48 48 H 1.08998 * 109.46655 * 60.00215 * 13 11 10 49 49 H 1.08997 * 109.47189 * 63.52026 * 18 17 16 50 50 H 1.09006 * 109.46606 * 183.51471 * 18 17 16 51 51 H 1.08996 * 109.47410 * 303.51556 * 18 17 16 52 52 H 1.08992 * 109.47104 * 184.65118 * 21 19 17 53 53 H 1.09007 * 109.46812 * 304.65098 * 21 19 17 54 54 H 1.08998 * 109.47585 * 64.64692 * 21 19 17 55 55 H 0.97000 * 120.00097 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8514 0.5682 0.8410 6 6 3.9952 0.5368 -1.3082 7 6 4.1573 2.5769 0.1250 8 7 5.6107 2.4521 0.2613 9 6 6.3155 2.2245 1.4107 10 6 5.7390 2.0469 2.7917 11 6 5.7425 3.3910 3.5224 12 6 5.0216 3.2440 4.8640 13 6 7.1861 3.8359 3.7652 14 7 7.5776 2.1833 1.0896 15 7 7.7171 2.3686 -0.1746 16 6 6.5417 2.5387 -0.7325 17 7 6.2928 2.7636 -2.0772 18 6 5.8223 4.1367 -2.3029 19 6 7.4831 2.4748 -2.8883 20 1 7.8213 1.4581 -2.6880 21 6 8.5957 3.4622 -2.5308 22 6 7.1404 2.6114 -4.3495 23 1 7.3238 3.5441 -4.8621 24 6 6.5928 1.5458 -5.0317 25 7 6.3950 1.6274 -6.3293 26 14 6.1320 -0.0141 -4.1130 27 1 4.6938 0.0341 -3.7463 28 1 6.3822 -1.1924 -4.9815 29 1 6.9536 -0.1239 -2.8809 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.4810 -0.4148 -1.4427 36 1 3.7612 1.1975 -2.1430 37 1 5.0711 0.3662 -1.2705 38 1 3.7518 3.0781 1.0039 39 1 3.9247 3.1605 -0.7656 40 1 4.7161 1.6784 2.7137 41 1 6.3423 1.3294 3.3477 42 1 5.2299 4.1365 2.9144 43 1 5.5342 2.4986 5.4720 44 1 5.0245 4.2016 5.3848 45 1 3.9932 2.9272 4.6911 46 1 7.1886 4.7937 4.2853 47 1 7.6986 3.0904 4.3732 48 1 7.6995 3.9406 2.8094 49 1 6.6068 4.8401 -2.0238 50 1 5.5752 4.2674 -3.3565 51 1 4.9359 4.3215 -1.6962 52 1 9.4494 3.3017 -3.1892 53 1 8.2296 4.4818 -2.6525 54 1 8.9008 3.3069 -1.4960 55 1 6.0094 0.8779 -6.8093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555238575.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:08 Heat of formation + Delta-G solvation = 15.036249 kcal Electronic energy + Delta-G solvation = -32570.662612 eV Core-core repulsion = 28643.789698 eV Total energy + Delta-G solvation = -3926.872914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.94292 -39.33100 -39.15763 -37.45510 -37.00075 -34.67376 -33.83769 -31.97914 -30.92257 -28.62015 -28.33977 -28.02269 -27.81587 -27.41823 -26.38297 -26.01764 -23.11441 -22.45056 -21.40127 -21.00732 -20.78331 -19.01449 -18.13317 -17.42154 -17.26670 -17.01754 -16.79064 -16.41596 -16.03170 -15.93496 -15.85967 -15.31853 -15.18038 -14.94812 -14.83674 -14.48838 -14.34363 -13.88368 -13.87818 -13.59577 -13.46878 -13.32109 -13.06559 -12.91800 -12.77234 -12.72969 -12.67651 -12.50108 -12.37947 -12.33434 -12.01994 -11.94565 -11.90835 -11.78040 -11.74087 -11.67671 -11.57492 -11.15372 -11.01806 -10.95199 -10.81958 -10.60027 -10.32203 -8.99083 -8.35042 -6.42491 0.90140 1.31328 1.34288 1.40831 1.47465 1.96407 2.33280 2.71563 2.87788 3.32227 3.44404 3.50950 3.77874 3.85958 3.93589 3.99036 4.05552 4.08886 4.24367 4.27620 4.31882 4.41209 4.45078 4.49303 4.50887 4.54588 4.62341 4.66978 4.69824 4.74166 4.78800 4.83557 4.85187 4.87949 4.89525 4.90794 5.02154 5.03073 5.07644 5.08987 5.15353 5.18955 5.27367 5.29259 5.31623 5.38634 5.49707 5.51594 5.59122 5.84150 6.02540 6.23583 6.25947 6.57053 6.73288 7.29982 7.93976 8.78420 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.005348 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.971050 B = 5234.382559 C = 7663.646625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.074 3.926 4 C -0.094 4.094 5 H 0.083 0.917 6 C -0.136 4.136 7 C 0.111 3.889 8 N -0.474 5.474 9 C 0.180 3.820 10 C -0.022 4.022 11 C -0.082 4.082 12 C -0.139 4.139 13 C -0.146 4.146 14 N -0.325 5.325 15 N -0.366 5.366 16 C 0.366 3.634 17 N -0.459 5.459 18 C 0.042 3.958 19 C 0.193 3.807 20 H 0.034 0.966 21 C -0.162 4.162 22 C -0.497 4.497 23 H 0.049 0.951 24 C 0.047 3.953 25 N -0.930 5.930 26 Si 0.936 3.064 27 H -0.246 1.246 28 H -0.304 1.304 29 H -0.276 1.276 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.023 0.977 38 H 0.134 0.866 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.031 0.969 49 H 0.031 0.969 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.045 0.955 53 H 0.046 0.954 54 H 0.071 0.929 55 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 3.039 22.550 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C -0.003 4.003 4 C -0.113 4.113 5 H 0.101 0.899 6 C -0.194 4.194 7 C -0.011 4.011 8 N -0.169 5.169 9 C -0.088 4.088 10 C -0.061 4.061 11 C -0.101 4.101 12 C -0.197 4.197 13 C -0.203 4.203 14 N -0.163 5.163 15 N -0.210 5.210 16 C 0.009 3.991 17 N -0.183 5.183 18 C -0.105 4.105 19 C 0.089 3.911 20 H 0.052 0.948 21 C -0.222 4.222 22 C -0.536 4.536 23 H 0.067 0.933 24 C -0.154 4.154 25 N -0.569 5.569 26 Si 0.764 3.236 27 H -0.170 1.170 28 H -0.232 1.232 29 H -0.202 1.202 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.152 0.848 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.050 0.950 49 H 0.049 0.951 50 H 0.098 0.902 51 H 0.098 0.902 52 H 0.064 0.936 53 H 0.065 0.935 54 H 0.089 0.911 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.625 2.351 22.349 26.280 hybrid contribution -0.569 -0.210 -0.789 0.995 sum -14.193 2.141 21.559 25.901 Atomic orbital electron populations 1.22910 0.79297 1.03634 1.01077 1.87850 1.21548 1.28575 1.95650 1.22431 0.90761 0.84902 1.02204 1.21384 0.95290 0.95886 0.98775 0.89871 1.21784 0.99203 1.00907 0.97461 1.22130 0.74618 0.97867 1.06477 1.46309 1.08719 1.55351 1.06502 1.25291 0.88574 1.03887 0.91086 1.20344 1.01797 0.99835 0.84159 1.21028 0.96727 0.94920 0.97469 1.21784 1.00482 1.02585 0.94823 1.21824 0.96279 1.01332 1.00900 1.73838 1.16334 1.19870 1.06261 1.74576 1.20205 1.24806 1.01406 1.23211 0.85174 1.01184 0.89517 1.59831 1.35990 1.25567 0.96942 1.22300 0.99094 0.85531 1.03588 1.19612 0.85101 0.95836 0.90565 0.94783 1.22361 0.99096 0.98958 1.01741 1.20948 1.41164 0.99426 0.92023 0.93315 1.25585 0.93954 1.01110 0.94787 1.70020 1.45015 1.33286 1.08607 0.86025 0.80774 0.78936 0.77855 1.17008 1.23181 1.20156 0.89114 0.92113 0.93641 0.89587 0.92466 0.92827 0.92855 0.95829 0.84812 0.87939 0.87681 0.88434 0.91409 0.92047 0.91825 0.91086 0.92100 0.92341 0.95010 0.95064 0.90203 0.90176 0.93567 0.93501 0.91079 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.42 -8.78 10.15 -148.98 -1.51 -10.29 16 3 C 0.07 1.25 5.32 71.98 0.38 1.63 16 4 C -0.09 -2.10 2.83 -10.80 -0.03 -2.13 16 5 H 0.08 1.86 7.93 -2.38 -0.02 1.84 16 6 C -0.14 -4.46 7.16 71.98 0.52 -3.94 16 7 C 0.11 2.30 5.03 86.37 0.43 2.74 16 8 N -0.47 -14.14 2.54 -514.86 -1.31 -15.45 16 9 C 0.18 5.27 6.66 137.64 0.92 6.19 16 10 C -0.02 -0.40 5.03 29.85 0.15 -0.25 16 11 C -0.08 -1.25 2.90 -10.79 -0.03 -1.28 16 12 C -0.14 -1.36 9.19 71.98 0.66 -0.70 16 13 C -0.15 -2.88 9.01 71.98 0.65 -2.23 16 14 N -0.33 -12.46 11.26 -49.54 -0.56 -13.01 16 15 N -0.37 -15.92 9.00 -58.00 -0.52 -16.45 16 16 C 0.37 14.35 5.63 260.11 1.46 15.82 16 17 N -0.46 -19.12 4.33 -711.00 -3.08 -22.20 16 18 C 0.04 1.49 8.67 127.69 1.11 2.60 16 19 C 0.19 9.45 1.45 44.17 0.06 9.52 16 20 H 0.03 1.86 5.57 -2.38 -0.01 1.85 16 21 C -0.16 -7.34 8.55 71.98 0.62 -6.72 16 22 C -0.50 -27.50 7.70 25.60 0.20 -27.31 16 23 H 0.05 2.92 8.05 -2.91 -0.02 2.90 16 24 C 0.05 2.68 5.47 84.65 0.46 3.14 16 25 N -0.93 -56.33 13.96 21.45 0.30 -56.03 16 26 Si 0.94 47.04 25.86 68.60 1.77 48.81 16 27 H -0.25 -11.45 5.66 99.48 0.56 -10.89 16 28 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 29 H -0.28 -14.38 5.90 99.48 0.59 -13.79 16 30 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.05 1.77 7.69 -2.39 -0.02 1.75 16 36 H 0.05 1.87 7.69 -2.39 -0.02 1.85 16 37 H 0.02 0.91 6.24 -2.39 -0.01 0.90 16 38 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 39 H 0.10 2.19 5.85 -2.39 -0.01 2.18 16 40 H 0.10 1.37 7.66 -2.39 -0.02 1.35 16 41 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.03 0.85 6.72 -2.39 -0.02 0.83 16 49 H 0.03 1.12 6.21 -2.39 -0.01 1.10 16 50 H 0.08 3.16 7.11 -2.38 -0.02 3.14 16 51 H 0.08 2.24 5.90 -2.39 -0.01 2.23 16 52 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 53 H 0.05 1.99 6.15 -2.38 -0.01 1.97 16 54 H 0.07 3.23 5.54 -2.39 -0.01 3.21 16 55 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.09 413.89 4.49 -69.60 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.58 Total: 16.35 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 8.81 Total: -1.32 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -5.17 Total: -123.15 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.51 Total: -10.29 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.77 Total: 48.81 kcal Total: -74.09 4.49 -69.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555238575.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.635 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds