Wall clock time and date at job start Tue Mar 31 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99835 * 2 1 4 4 C 1.52999 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.09010 * 109.47141 * 55.00231 * 4 3 2 6 6 C 1.52997 * 109.47305 * 295.00330 * 4 3 2 7 7 C 1.52999 * 109.47235 * 174.99873 * 4 3 2 8 8 N 1.46494 * 109.47402 * 180.87224 * 7 4 3 9 9 C 1.36740 * 127.13592 * 250.50446 * 8 7 4 10 10 C 1.50697 * 126.35009 * 359.94090 * 9 8 7 11 11 C 1.53000 * 109.47388 * 98.11844 * 10 9 8 12 12 C 1.53000 * 109.47024 * 64.35680 * 11 10 9 13 13 C 1.53001 * 109.46991 * 184.35454 * 11 10 9 14 14 N 1.30296 * 107.30654 * 179.97438 * 9 8 7 15 15 N 1.28527 * 110.05472 * 359.97438 * 14 9 8 16 16 C 1.31220 * 109.85865 * 359.74716 * 15 14 9 17 17 N 1.38579 * 126.47612 * 180.26051 * 16 15 14 18 18 C 1.46903 * 110.99922 * 250.24317 * 17 16 15 19 19 C 1.46899 * 111.00017 * 14.19762 * 17 16 15 20 20 H 1.09003 * 109.47491 * 55.00207 * 19 17 16 21 21 C 1.53001 * 109.46907 * 295.00225 * 19 17 16 22 22 C 1.50702 * 109.47307 * 175.00477 * 19 17 16 23 23 H 1.07996 * 120.00462 * 114.62443 * 22 19 17 24 24 C 1.37878 * 119.99821 * 294.62189 * 22 19 17 25 25 N 1.31507 * 120.00170 * 184.74501 * 24 22 19 26 26 Si 1.86801 * 119.99732 * 4.74318 * 24 22 19 27 27 H 1.48506 * 109.47152 * 94.00027 * 26 24 22 28 28 H 1.48501 * 109.47013 * 213.99655 * 26 24 22 29 29 H 1.48501 * 109.47651 * 333.99691 * 26 24 22 30 30 H 1.08997 * 109.46867 * 59.99493 * 1 2 3 31 31 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46702 * 300.00197 * 1 2 3 33 33 H 1.08997 * 109.46967 * 60.00075 * 3 2 1 34 34 H 1.08997 * 109.47093 * 300.00188 * 3 2 1 35 35 H 1.08998 * 109.47061 * 172.24125 * 6 4 3 36 36 H 1.08995 * 109.47581 * 52.23778 * 6 4 3 37 37 H 1.09005 * 109.46720 * 292.23847 * 6 4 3 38 38 H 1.09003 * 109.47262 * 300.86901 * 7 4 3 39 39 H 1.09000 * 109.47116 * 60.87199 * 7 4 3 40 40 H 1.09000 * 109.47352 * 218.12204 * 10 9 8 41 41 H 1.09010 * 109.46642 * 338.11904 * 10 9 8 42 42 H 1.08998 * 109.46989 * 304.35483 * 11 10 9 43 43 H 1.08999 * 109.46888 * 300.00230 * 12 11 10 44 44 H 1.09004 * 109.47072 * 59.99722 * 12 11 10 45 45 H 1.09000 * 109.47131 * 180.02562 * 12 11 10 46 46 H 1.09000 * 109.47201 * 60.00230 * 13 11 10 47 47 H 1.09000 * 109.46861 * 180.02562 * 13 11 10 48 48 H 1.08998 * 109.47277 * 299.99852 * 13 11 10 49 49 H 1.09002 * 109.47038 * 58.67006 * 18 17 16 50 50 H 1.09000 * 109.46836 * 178.66711 * 18 17 16 51 51 H 1.08993 * 109.47175 * 298.66416 * 18 17 16 52 52 H 1.08998 * 109.46994 * 304.56487 * 21 19 17 53 53 H 1.09002 * 109.47446 * 64.56754 * 21 19 17 54 54 H 1.09001 * 109.47086 * 184.56638 * 21 19 17 55 55 H 0.97007 * 120.00447 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 1 3.8515 0.5683 -0.8410 6 6 3.9952 0.5369 1.3082 7 6 4.1574 2.5770 -0.1251 8 7 5.6175 2.4596 -0.1454 9 6 6.4898 2.8380 0.8372 10 6 6.1287 3.4627 2.1602 11 6 6.1064 2.3836 3.2446 12 6 7.5137 1.8104 3.4227 13 6 5.6347 2.9969 4.5646 14 7 7.6913 2.5590 0.4173 15 7 7.6379 2.0337 -0.7544 16 6 6.3887 1.9436 -1.1460 17 7 5.9379 1.4258 -2.3498 18 6 5.4126 2.4892 -3.2165 19 6 6.9993 0.6700 -3.0281 20 1 7.3832 -0.0989 -2.3576 21 6 8.1335 1.6204 -3.4168 22 6 6.4402 0.0214 -4.2682 23 1 6.7922 0.3263 -5.2426 24 6 5.4792 -0.9612 -4.1588 25 7 5.0589 -1.5924 -5.2332 26 14 4.7743 -1.3959 -2.4844 27 1 3.5297 -0.6190 -2.2544 28 1 4.4670 -2.8480 -2.4385 29 1 5.7657 -1.0662 -1.4291 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 5.0630 0.3249 1.2529 36 1 3.4479 -0.3924 1.4654 37 1 3.8024 1.2170 2.1380 38 1 3.8176 3.0446 -1.0493 39 1 3.8539 3.1886 0.7245 40 1 6.8678 4.2213 2.4176 41 1 5.1441 3.9248 2.0870 42 1 5.4239 1.5865 2.9499 43 1 7.8497 1.3736 2.4823 44 1 8.1962 2.6076 3.7174 45 1 7.4977 1.0413 4.1949 46 1 4.6321 3.4053 4.4378 47 1 5.6192 2.2282 5.3373 48 1 6.3171 3.7940 4.8593 49 1 6.1941 3.2262 -3.4017 50 1 5.0875 2.0586 -4.1636 51 1 4.5666 2.9718 -2.7274 52 1 7.7341 2.4348 -4.0211 53 1 8.5914 2.0276 -2.5153 54 1 8.8832 1.0758 -3.9908 55 1 4.3825 -2.2835 -5.1563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555238576.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:11 Heat of formation + Delta-G solvation = 17.987533 kcal Electronic energy + Delta-G solvation = -33074.894527 eV Core-core repulsion = 29148.149591 eV Total energy + Delta-G solvation = -3926.744937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.96961 -39.36766 -39.24294 -37.55036 -36.94414 -34.63745 -33.88561 -31.99178 -30.93591 -28.63063 -28.34094 -28.03178 -27.80808 -27.47213 -26.44800 -26.05219 -23.22951 -22.31803 -21.65440 -20.86339 -20.72523 -18.95117 -18.18490 -17.53601 -17.25531 -17.13992 -16.82112 -16.50363 -16.06549 -15.93269 -15.84380 -15.46752 -15.25476 -15.03161 -14.81715 -14.45080 -14.29165 -13.84223 -13.78151 -13.53951 -13.44391 -13.34644 -13.05509 -12.98907 -12.84838 -12.77520 -12.67992 -12.57944 -12.43385 -12.32998 -12.04279 -12.01867 -11.91876 -11.80364 -11.72165 -11.59978 -11.38872 -11.31553 -11.01833 -10.95833 -10.78136 -10.60996 -10.35564 -9.03575 -8.35124 -6.44675 0.87805 1.33537 1.36921 1.42634 1.53959 1.95287 2.35907 2.70423 2.87903 3.26745 3.44812 3.52187 3.77560 3.85873 3.93379 3.98626 4.02873 4.07223 4.19146 4.26311 4.33217 4.35908 4.43114 4.47348 4.49124 4.50731 4.55846 4.61947 4.69366 4.74370 4.76244 4.81239 4.83520 4.84789 4.86168 4.89959 4.99627 5.06770 5.06859 5.08198 5.14780 5.17975 5.26386 5.29241 5.32326 5.37022 5.49463 5.53384 5.59415 5.80928 5.94462 6.23766 6.25960 6.53039 6.70640 7.29262 7.92257 8.76661 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009142 B = 0.005924 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.123067 B = 4725.346423 C = 6779.437736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.075 3.925 4 C -0.130 4.130 5 H 0.062 0.938 6 C -0.133 4.133 7 C 0.116 3.884 8 N -0.473 5.473 9 C 0.184 3.816 10 C -0.021 4.021 11 C -0.095 4.095 12 C -0.146 4.146 13 C -0.137 4.137 14 N -0.323 5.323 15 N -0.361 5.361 16 C 0.362 3.638 17 N -0.464 5.464 18 C 0.041 3.959 19 C 0.200 3.800 20 H 0.022 0.978 21 C -0.160 4.160 22 C -0.506 4.506 23 H 0.050 0.950 24 C 0.045 3.955 25 N -0.930 5.930 26 Si 0.967 3.033 27 H -0.249 1.249 28 H -0.322 1.322 29 H -0.282 1.282 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.142 0.858 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.079 0.921 51 H 0.079 0.921 52 H 0.048 0.952 53 H 0.073 0.927 54 H 0.046 0.954 55 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 13.798 20.230 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.343 6.343 3 C -0.001 4.001 4 C -0.149 4.149 5 H 0.080 0.920 6 C -0.190 4.190 7 C -0.006 4.006 8 N -0.168 5.168 9 C -0.084 4.084 10 C -0.060 4.060 11 C -0.115 4.115 12 C -0.204 4.204 13 C -0.195 4.195 14 N -0.162 5.162 15 N -0.204 5.204 16 C 0.005 3.995 17 N -0.189 5.189 18 C -0.106 4.106 19 C 0.095 3.905 20 H 0.040 0.960 21 C -0.218 4.218 22 C -0.545 4.545 23 H 0.068 0.932 24 C -0.156 4.156 25 N -0.569 5.569 26 Si 0.798 3.202 27 H -0.174 1.174 28 H -0.251 1.251 29 H -0.208 1.208 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.160 0.840 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.054 0.946 50 H 0.098 0.902 51 H 0.097 0.903 52 H 0.067 0.933 53 H 0.092 0.908 54 H 0.065 0.935 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.710 13.087 20.192 25.948 hybrid contribution -0.891 -0.517 -0.483 1.137 sum -10.601 12.570 19.709 25.668 Atomic orbital electron populations 1.22917 0.79225 1.03553 1.01241 1.87888 1.21734 1.28993 1.95648 1.22427 0.90764 0.84757 1.02197 1.21712 0.95748 0.97020 1.00456 0.92000 1.21765 0.98982 1.01598 0.96635 1.22070 0.74342 0.97485 1.06699 1.46324 1.09057 1.48010 1.13405 1.25349 0.85584 1.02944 0.94573 1.20363 1.04478 0.97503 0.83647 1.21228 0.97365 0.97330 0.95566 1.21831 0.97032 1.01014 1.00504 1.21766 1.02009 1.01035 0.94646 1.73841 1.20742 1.16033 1.05535 1.74564 1.15898 1.22065 1.07913 1.23101 0.86837 0.97290 0.92301 1.59567 1.35948 1.22506 1.00881 1.22288 0.98874 0.91632 0.97791 1.19467 0.87240 0.91547 0.92239 0.95980 1.22321 0.98774 0.99198 1.01552 1.21020 1.22494 1.18988 0.92000 0.93215 1.25602 0.95955 0.94771 0.99247 1.70035 1.31061 1.25088 1.30736 0.85530 0.79731 0.74230 0.80716 1.17440 1.25142 1.20791 0.93487 0.89476 0.91703 0.89358 0.92277 0.95993 0.92673 0.88971 0.88110 0.84024 0.87715 0.86941 0.91358 0.95313 0.91877 0.92706 0.90798 0.92330 0.91648 0.94601 0.90185 0.90284 0.93325 0.90799 0.93478 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -11.31 10.12 -148.98 -1.51 -12.82 16 3 C 0.08 1.57 5.32 71.98 0.38 1.95 16 4 C -0.13 -3.48 2.75 -10.80 -0.03 -3.51 16 5 H 0.06 2.32 4.45 -2.38 -0.01 2.31 16 6 C -0.13 -3.43 7.89 71.98 0.57 -2.86 16 7 C 0.12 2.50 5.45 86.38 0.47 2.97 16 8 N -0.47 -14.32 2.28 -514.86 -1.17 -15.50 16 9 C 0.18 5.29 6.71 137.64 0.92 6.22 16 10 C -0.02 -0.35 5.11 29.85 0.15 -0.20 16 11 C -0.10 -1.62 2.92 -10.79 -0.03 -1.65 16 12 C -0.15 -3.26 8.96 71.98 0.64 -2.61 16 13 C -0.14 -1.44 9.19 71.98 0.66 -0.77 16 14 N -0.32 -12.25 10.97 -49.54 -0.54 -12.80 16 15 N -0.36 -15.68 8.99 -58.00 -0.52 -16.20 16 16 C 0.36 14.47 6.56 260.11 1.71 16.18 16 17 N -0.46 -20.01 2.42 -710.99 -1.72 -21.73 16 18 C 0.04 1.51 8.70 127.69 1.11 2.62 16 19 C 0.20 9.97 1.40 44.17 0.06 10.03 16 20 H 0.02 1.24 6.99 -2.39 -0.02 1.22 16 21 C -0.16 -7.20 8.50 71.98 0.61 -6.59 16 22 C -0.51 -28.70 7.75 25.60 0.20 -28.50 16 23 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 24 C 0.05 2.65 5.47 84.66 0.46 3.12 16 25 N -0.93 -57.39 13.96 21.45 0.30 -57.10 16 26 Si 0.97 50.10 24.40 68.60 1.67 51.77 16 27 H -0.25 -12.10 5.98 99.48 0.59 -11.50 16 28 H -0.32 -17.14 7.11 99.48 0.71 -16.43 16 29 H -0.28 -15.17 6.36 99.48 0.63 -14.53 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.02 0.69 7.51 -2.39 -0.02 0.68 16 36 H 0.05 1.53 7.63 -2.39 -0.02 1.52 16 37 H 0.09 1.62 6.73 -2.38 -0.02 1.61 16 38 H 0.10 2.01 6.12 -2.39 -0.01 1.99 16 39 H 0.14 1.65 6.72 -2.39 -0.02 1.63 16 40 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.11 1.13 6.86 -2.38 -0.02 1.11 16 42 H 0.07 1.30 4.97 -2.39 -0.01 1.29 16 43 H 0.03 0.86 6.49 -2.39 -0.02 0.85 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.04 1.29 6.48 -2.39 -0.02 1.27 16 50 H 0.08 3.34 6.94 -2.39 -0.02 3.32 16 51 H 0.08 2.34 5.96 -2.39 -0.01 2.33 16 52 H 0.05 2.06 6.26 -2.39 -0.01 2.04 16 53 H 0.07 3.33 5.52 -2.39 -0.01 3.32 16 54 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 55 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -77.77 405.92 6.33 -71.44 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.68 Total: 14.82 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 9.14 Total: -1.89 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -3.66 Total: -123.32 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -1.51 Total: -12.82 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 1.67 Total: 51.77 kcal Total: -77.77 6.33 -71.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555238576.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.430 kcal (2) G-P(sol) polarization free energy of solvation -77.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds