Wall clock time and date at job start Tue Mar 31 2020 22:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46847 * 110.99949 * 2 1 4 4 C 1.53029 * 109.52373 * 185.83628 * 3 2 1 5 5 C 1.53115 * 109.28234 * 300.82799 * 4 3 2 6 6 C 1.53114 * 109.16144 * 57.65007 * 5 4 3 7 7 H 1.09005 * 109.50275 * 62.29138 * 6 5 4 8 8 C 1.53000 * 109.53628 * 182.38657 * 6 5 4 9 9 C 1.53004 * 109.47140 * 184.90476 * 8 6 5 10 10 N 1.46502 * 109.46991 * 180.02562 * 9 8 6 11 11 C 1.34781 * 120.00063 * 180.02562 * 10 9 8 12 12 O 1.21585 * 119.99787 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00001 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99772 * 179.97438 * 13 11 10 15 15 C 1.53042 * 109.46183 * 275.02240 * 14 13 11 16 16 C 1.53191 * 109.31759 * 178.59954 * 15 14 13 17 17 N 1.46935 * 108.76114 * 54.65646 * 16 15 14 18 18 C 1.36938 * 120.62527 * 126.36610 * 17 16 15 19 19 H 1.07997 * 120.00200 * 331.85457 * 18 17 16 20 20 C 1.38807 * 119.99672 * 151.86958 * 18 17 16 21 21 N 1.31618 * 120.00191 * 343.05009 * 20 18 17 22 22 Si 1.86800 * 120.00191 * 163.06010 * 20 18 17 23 23 H 1.48500 * 109.47017 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47539 * 119.99181 * 22 20 18 25 25 H 1.48498 * 109.47229 * 239.99570 * 22 20 18 26 26 C 1.46927 * 118.74002 * 306.38352 * 17 16 15 27 27 C 1.53043 * 109.46176 * 154.97156 * 14 13 11 28 28 C 1.46842 * 110.99786 * 124.21662 * 2 1 3 29 29 H 1.08993 * 109.47116 * 295.78761 * 1 2 3 30 30 H 1.09005 * 109.47091 * 55.78719 * 1 2 3 31 31 H 1.09004 * 109.47082 * 175.78238 * 1 2 3 32 32 H 1.08998 * 109.46598 * 305.86271 * 3 2 1 33 33 H 1.09004 * 109.45783 * 65.83472 * 3 2 1 34 34 H 1.09004 * 109.50132 * 60.77139 * 4 3 2 35 35 H 1.09002 * 109.50565 * 180.84437 * 4 3 2 36 36 H 1.08999 * 109.52523 * 297.74589 * 5 4 3 37 37 H 1.09005 * 109.52548 * 177.55705 * 5 4 3 38 38 H 1.09005 * 109.47081 * 304.90118 * 8 6 5 39 39 H 1.08998 * 109.47191 * 64.90419 * 8 6 5 40 40 H 1.08995 * 109.46766 * 299.99794 * 9 8 6 41 41 H 1.08996 * 109.47515 * 60.00261 * 9 8 6 42 42 H 0.97000 * 119.99985 * 359.97438 * 10 9 8 43 43 H 0.96993 * 120.00088 * 359.97438 * 13 11 10 44 44 H 1.09003 * 109.46226 * 34.99633 * 14 13 11 45 45 H 1.09000 * 109.50145 * 298.57286 * 15 14 13 46 46 H 1.09004 * 109.49449 * 58.66756 * 15 14 13 47 47 H 1.09000 * 109.59926 * 294.87557 * 16 15 14 48 48 H 1.08998 * 109.70353 * 174.50805 * 16 15 14 49 49 H 0.97001 * 120.00413 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.58477 * 293.82246 * 26 17 16 51 51 H 1.08993 * 109.70097 * 173.46112 * 26 17 16 52 52 H 1.08999 * 109.49470 * 301.33502 * 27 14 13 53 53 H 1.08999 * 109.49903 * 61.40037 * 27 14 13 54 54 H 1.08999 * 109.46688 * 54.14330 * 28 2 1 55 55 H 1.09004 * 109.46115 * 294.17068 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5369 1.0143 6 6 3.5181 -0.8715 1.0207 7 1 3.7814 -1.3836 0.0952 8 6 4.0679 -1.6568 2.2131 9 6 3.5632 -3.0998 2.1499 10 7 4.0892 -3.8516 3.2921 11 6 3.7750 -5.1534 3.4443 12 8 3.0547 -5.7037 2.6340 13 7 4.2593 -5.8451 4.4947 14 6 3.9174 -7.2599 4.6605 15 6 2.5760 -7.3784 5.3876 16 6 2.2047 -8.8580 5.5281 17 7 3.3127 -9.5627 6.1876 18 6 3.0905 -10.3178 7.3082 19 1 2.2754 -10.0716 7.9725 20 6 3.9133 -11.3996 7.5903 21 7 4.6790 -11.9075 6.6480 22 14 3.9336 -12.1347 9.3075 23 1 2.9900 -11.3873 10.1771 24 1 3.5226 -13.5601 9.2407 25 1 5.3048 -12.0408 9.8699 26 6 4.6633 -9.4413 5.6222 27 6 5.0067 -7.9551 5.4803 28 6 1.9952 -0.7709 1.1336 29 1 -0.3633 0.4470 0.9253 30 1 -0.3633 0.5779 -0.8499 31 1 -0.3633 -1.0249 -0.0756 32 1 1.5634 1.9258 -0.8329 33 1 1.7326 1.8607 0.9377 34 1 3.7813 0.8569 -1.0906 35 1 3.9098 2.3513 -0.1316 36 1 3.8887 1.0353 1.9560 37 1 5.1998 0.4713 0.8905 38 1 5.1575 -1.6512 2.1806 39 1 3.7297 -1.1939 3.1402 40 1 2.4737 -3.1053 2.1825 41 1 3.9014 -3.5628 1.2230 42 1 4.6642 -3.4126 3.9383 43 1 4.8343 -5.4062 5.1409 44 1 3.8426 -7.7326 3.6811 45 1 2.6572 -6.9280 6.3768 46 1 1.8049 -6.8630 4.8149 47 1 2.0346 -9.2877 4.5409 48 1 1.3007 -8.9546 6.1294 49 1 5.2537 -12.6637 6.8450 50 1 4.6936 -9.9185 4.6426 51 1 5.3835 -9.9211 6.2849 52 1 5.9661 -7.8502 4.9737 53 1 5.0653 -7.4989 6.4685 54 1 1.5634 -1.7716 1.1241 55 1 1.7325 -0.2710 2.0660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563959569.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:12 Heat of formation + Delta-G solvation = -46.899983 kcal Electronic energy + Delta-G solvation = -29599.998172 eV Core-core repulsion = 25670.439502 eV Total energy + Delta-G solvation = -3929.558670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.19868 -40.17545 -39.10489 -36.77935 -35.89583 -34.80436 -33.89390 -32.95285 -31.75361 -31.11222 -29.03181 -27.70375 -26.84154 -24.95378 -23.97234 -23.75519 -23.32781 -22.10420 -21.71914 -21.04481 -20.59902 -19.31766 -18.56650 -17.51064 -16.88263 -16.84107 -16.64443 -16.15792 -15.83815 -15.58758 -15.50060 -15.34970 -15.30587 -15.19956 -14.83702 -14.67485 -14.37790 -14.20790 -14.03014 -13.79397 -13.25567 -13.16643 -13.11393 -13.00853 -12.97004 -12.64243 -12.60136 -12.50464 -12.21467 -12.15450 -11.98822 -11.87529 -11.85020 -11.55807 -11.54035 -11.41802 -11.31712 -11.15903 -11.07416 -10.56186 -10.27781 -9.69664 -9.29080 -8.70355 -7.87226 -5.33035 1.48055 1.49928 1.60828 1.74229 2.20603 2.52466 2.98051 3.26321 3.35196 3.67227 3.70165 3.87035 3.91110 3.93472 4.07881 4.14839 4.21966 4.33689 4.35785 4.37257 4.47252 4.49302 4.52672 4.57549 4.62930 4.66077 4.69698 4.82622 4.85487 4.86383 4.93938 4.96594 4.97743 4.99707 5.04361 5.07630 5.11973 5.16122 5.17143 5.26184 5.30576 5.35833 5.47600 5.52912 5.55666 5.62808 5.65576 5.71308 6.08647 6.11717 6.16245 6.39665 7.15007 7.18119 7.65285 7.84325 8.37692 9.20108 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.001653 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.193493 B =16937.915997 C =17347.609277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.559 5.559 3 C 0.052 3.948 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.077 4.077 7 H 0.072 0.928 8 C -0.110 4.110 9 C 0.139 3.861 10 N -0.732 5.732 11 C 0.697 3.303 12 O -0.639 6.639 13 N -0.726 5.726 14 C 0.181 3.819 15 C -0.123 4.123 16 C 0.144 3.856 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.068 0.932 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.178 3.822 27 C -0.127 4.127 28 C 0.057 3.943 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.412 0.588 43 H 0.410 0.590 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.006 0.994 48 H 0.057 0.943 49 H 0.251 0.749 50 H -0.006 1.006 51 H 0.064 0.936 52 H 0.076 0.924 53 H 0.071 0.929 54 H 0.065 0.935 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 31.599 -9.819 33.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.283 5.283 3 C -0.076 4.076 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.096 4.096 7 H 0.090 0.910 8 C -0.149 4.149 9 C 0.015 3.985 10 N -0.389 5.389 11 C 0.397 3.603 12 O -0.521 6.521 13 N -0.381 5.381 14 C 0.075 3.925 15 C -0.163 4.163 16 C 0.018 3.982 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.085 0.915 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.798 3.202 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.214 1.214 26 C 0.052 3.948 27 C -0.167 4.167 28 C -0.071 4.071 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.249 0.751 43 H 0.246 0.754 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.024 0.976 48 H 0.076 0.924 49 H 0.060 0.940 50 H 0.012 0.988 51 H 0.082 0.918 52 H 0.095 0.905 53 H 0.090 0.910 54 H 0.083 0.917 55 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.126 30.770 -10.977 32.670 hybrid contribution -0.034 -0.392 1.784 1.827 sum 0.092 30.379 -9.193 31.739 Atomic orbital electron populations 1.22375 0.86816 1.02392 1.00838 1.61918 1.08175 1.14522 1.43735 1.22172 0.96347 0.88494 1.00551 1.21586 0.93789 1.00934 0.99094 1.21608 1.00557 0.94052 0.98748 1.21065 0.93563 0.96613 0.98386 0.90957 1.21727 1.02109 0.91740 0.99288 1.21258 0.98099 0.91623 0.87562 1.44977 1.55264 1.08302 1.30385 1.16212 0.80257 0.82151 0.81730 1.90899 1.43875 1.70460 1.46873 1.45113 1.54331 1.11249 1.27417 1.20473 0.94507 0.79495 0.97985 1.22177 0.96972 0.97096 1.00080 1.20967 0.91226 0.91101 0.94892 1.44353 1.02995 1.55676 1.30175 1.19556 1.14754 1.06002 0.98945 0.91480 1.25825 1.00846 0.96663 1.01221 1.70193 1.30280 1.25177 1.32542 0.85179 0.77452 0.77463 0.80152 1.19083 1.22164 1.21371 1.20571 0.87056 0.91690 0.95499 1.22251 0.97399 0.97159 0.99841 1.22216 0.95768 0.97834 0.91248 0.95571 0.90491 0.91706 0.90364 0.95003 0.91767 0.90022 0.91656 0.90493 0.89276 0.90092 0.93105 0.93197 0.75123 0.75368 0.92858 0.91485 0.92560 0.97640 0.92412 0.94012 0.98828 0.91754 0.90515 0.90992 0.91656 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.59 127.69 1.22 1.54 16 2 N -0.56 -8.31 4.91 -922.60 -4.53 -12.84 16 3 C 0.05 0.59 5.46 86.32 0.47 1.07 16 4 C -0.12 -1.10 6.09 30.64 0.19 -0.91 16 5 C -0.11 -0.99 5.29 30.67 0.16 -0.83 16 6 C -0.08 -0.90 2.35 -10.74 -0.03 -0.93 16 7 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 8 C -0.11 -1.14 4.80 30.60 0.15 -0.99 16 9 C 0.14 2.50 5.43 86.38 0.47 2.97 16 10 N -0.73 -14.08 5.56 -478.53 -2.66 -16.74 16 11 C 0.70 20.39 8.53 179.05 1.53 21.92 16 12 O -0.64 -25.42 16.00 -3.98 -0.06 -25.48 16 13 N -0.73 -19.42 5.08 -457.69 -2.33 -21.75 16 14 C 0.18 6.32 2.42 45.02 0.11 6.43 16 15 C -0.12 -4.53 5.65 30.67 0.17 -4.36 16 16 C 0.14 6.42 6.52 86.36 0.56 6.98 16 17 N -0.61 -31.10 2.99 -699.08 -2.09 -33.19 16 18 C -0.26 -14.51 9.58 84.03 0.81 -13.71 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 21 N -0.94 -55.47 11.19 21.65 0.24 -55.22 16 22 Si 0.97 44.64 29.59 68.60 2.03 46.67 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 26 C 0.18 8.60 5.30 86.36 0.46 9.05 16 27 C -0.13 -4.54 5.55 30.67 0.17 -4.37 16 28 C 0.06 0.83 4.48 86.33 0.39 1.22 16 29 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.84 8.09 -2.38 -0.02 0.82 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.05 1.08 6.59 -2.39 -0.02 1.07 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.41 4.87 8.49 -92.71 -0.79 4.08 16 43 H 0.41 7.91 8.62 -92.71 -0.80 7.12 16 44 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 47 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 49 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 50 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 51 H 0.06 3.45 6.06 -2.39 -0.01 3.44 16 52 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 53 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 54 H 0.06 1.13 6.59 -2.39 -0.02 1.11 16 55 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -72.23 419.40 -2.88 -75.11 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.73 Total: 20.75 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 7.25 Total: 22.69 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -11.37 Total: -139.74 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.48 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -72.23 -2.88 -75.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563959569.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.212 kcal (2) G-P(sol) polarization free energy of solvation -72.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds