Wall clock time and date at job start Tue Mar 31 2020 22:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48504 * 109.46930 * 239.99771 * 3 2 1 5 5 H 1.48496 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47190 * 119.99720 * 3 2 1 7 7 C 1.38819 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21716 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.46422 * 119.99741 * 179.97438 * 16 15 14 19 19 S 1.76214 * 126.16627 * 359.68909 * 18 16 15 20 20 C 1.70925 * 90.39951 * 179.97438 * 19 18 16 21 21 Cl 1.73592 * 124.69452 * 180.02562 * 20 19 18 22 22 N 1.29515 * 110.60733 * 0.34854 * 20 19 18 23 23 C 1.31038 * 117.41735 * 359.72786 * 22 20 19 24 24 Cl 1.73608 * 123.04999 * 179.97438 * 23 22 20 25 25 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 28 28 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 29 29 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 30 30 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 31 31 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 32 32 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3210 -4.8120 -1.2197 14 6 1.8246 -6.1412 0.1269 15 7 0.8725 -7.2547 0.1269 16 6 1.3184 -8.5225 0.2292 17 8 2.5121 -8.7423 0.3210 18 6 0.3669 -9.6354 0.2297 19 16 -1.3865 -9.5044 0.1135 20 6 -1.5310 -11.2056 0.1952 21 17 -3.0339 -12.0730 0.1471 22 7 -0.3644 -11.7574 0.3046 23 6 0.6784 -10.9643 0.3278 24 17 2.3078 -11.5466 0.4704 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.6846 -3.7146 0.8906 28 1 2.6846 -3.7146 -0.8895 29 1 0.8668 -4.9036 -2.0127 30 1 2.5084 -6.2483 -0.7151 31 1 2.3911 -6.1471 1.0580 32 1 -0.0787 -7.0795 0.0541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568593025.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:45 Heat of formation + Delta-G solvation = -31.788494 kcal Electronic energy + Delta-G solvation = -21255.564607 eV Core-core repulsion = 17430.806272 eV Total energy + Delta-G solvation = -3824.758336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 339.000 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.73796 -39.63112 -37.79619 -37.61013 -36.96008 -34.60556 -34.09480 -31.59925 -31.08561 -29.13045 -26.78461 -25.41646 -23.11326 -21.94590 -21.56129 -20.68952 -19.67078 -17.87830 -17.23040 -16.64547 -16.38051 -16.25424 -15.88070 -15.69924 -15.13880 -14.75951 -14.50640 -14.13404 -13.75111 -13.11256 -13.04891 -12.78719 -12.74459 -12.40794 -12.28970 -11.95839 -11.77779 -11.48445 -11.01259 -10.83654 -10.77378 -10.73141 -10.35489 -10.31376 -10.24670 -9.87666 -9.61624 -9.47615 -9.28702 -8.94601 -6.99389 -5.80588 -3.10609 -0.67794 -0.12516 0.39490 0.94024 1.55522 1.72369 2.66876 2.68645 3.41506 3.45959 3.46988 3.90936 4.31329 4.47611 4.49812 4.62770 4.76740 5.11219 5.49618 5.51629 5.64590 5.83854 6.03258 6.17116 6.43852 6.45565 6.58743 7.07915 7.63833 7.74353 7.84172 8.37442 9.49193 10.04763 10.40262 11.41649 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.002182 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.728279 B =12830.418358 C =14038.834280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.128 3.872 11 C 0.088 3.912 12 H 0.107 0.893 13 O -0.553 6.553 14 C 0.090 3.910 15 N -0.712 5.712 16 C 0.591 3.409 17 O -0.503 6.503 18 C -0.281 4.281 19 S 0.298 5.702 20 C 0.081 3.919 21 Cl 0.050 6.950 22 N -0.459 5.459 23 C 0.192 3.808 24 Cl 0.043 6.957 25 H 0.256 0.744 26 H 0.389 0.611 27 H 0.030 0.970 28 H 0.024 0.976 29 H 0.374 0.626 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 -25.691 -0.056 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.028 3.972 12 H 0.124 0.876 13 O -0.358 6.358 14 C -0.034 4.034 15 N -0.364 5.364 16 C 0.374 3.626 17 O -0.380 6.380 18 C -0.408 4.408 19 S 0.550 5.450 20 C -0.220 4.220 21 Cl 0.078 6.922 22 N -0.177 5.177 23 C 0.026 3.974 24 Cl 0.072 6.928 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.222 0.778 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.288 -25.537 0.378 26.081 hybrid contribution 0.980 0.244 -0.281 1.048 sum -4.308 -25.293 0.097 25.657 Atomic orbital electron populations 1.69659 1.05120 1.25872 1.57159 1.24763 0.95539 0.97754 1.02711 0.86251 0.78522 0.83403 0.77882 1.21220 1.21632 1.21207 1.19166 0.90978 0.84064 1.43459 0.91230 1.42221 1.06059 0.99367 1.89423 1.21189 0.93427 0.86482 0.99000 1.22433 0.94715 0.91687 0.88393 0.87556 1.86577 1.37555 1.96222 1.15431 1.22232 0.91970 0.85305 1.03873 1.45788 1.11281 1.05111 1.74202 1.16407 0.86894 0.81409 0.77921 1.90925 1.14532 1.83841 1.48654 1.25986 0.98103 0.98032 1.18674 1.84300 0.97586 1.00787 1.62372 1.27126 0.92851 0.95745 1.06254 1.98478 1.21594 1.76044 1.96106 1.65287 0.96679 1.38670 1.17079 1.20732 0.89743 0.86674 1.00259 1.98472 1.10361 1.88730 1.95263 0.93377 0.77710 0.95269 0.95800 0.77838 0.90372 0.89724 0.76253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.70 5.55 -59.91 -0.33 -18.03 16 10 C 0.13 2.32 5.90 -4.04 -0.02 2.30 16 11 C 0.09 1.21 3.09 -26.73 -0.08 1.13 16 12 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 13 O -0.55 -7.84 13.03 -35.23 -0.46 -8.30 16 14 C 0.09 1.04 5.34 -4.04 -0.02 1.02 16 15 N -0.71 -7.47 5.44 -61.70 -0.34 -7.81 16 16 C 0.59 7.01 7.78 -12.96 -0.10 6.91 16 17 O -0.50 -7.39 15.16 5.17 0.08 -7.31 16 18 C -0.28 -2.90 6.51 -36.79 -0.24 -3.14 16 19 S 0.30 2.12 22.34 -107.50 -2.40 -0.28 16 20 C 0.08 0.68 8.01 51.79 0.41 1.10 16 21 Cl 0.05 0.34 29.33 -51.86 -1.52 -1.18 16 22 N -0.46 -4.92 10.51 -9.30 -0.10 -5.01 16 23 C 0.19 2.16 7.41 -18.39 -0.14 2.02 16 24 Cl 0.04 0.50 27.38 -51.86 -1.42 -0.92 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.39 10.13 7.67 -40.82 -0.31 9.82 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.37 4.33 9.05 45.56 0.41 4.74 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.40 3.63 7.53 -40.82 -0.31 3.32 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -32.61 333.29 -8.07 -40.68 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -1.87 Total: 9.12 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -0.44 Total: 4.04 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.04 Total: -57.91 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.38 Total: -15.61 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.40 Total: -0.28 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -2.94 Total: -2.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.61 -8.07 -40.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568593025.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.891 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds