Wall clock time and date at job start Tue Mar 31 2020 22:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48504 * 109.46930 * 239.99771 * 3 2 1 5 5 H 1.48496 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47190 * 119.99720 * 3 2 1 7 7 C 1.38819 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21716 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.46422 * 119.99741 * 179.97438 * 16 15 14 19 19 S 1.76214 * 126.16627 * 359.68909 * 18 16 15 20 20 C 1.70925 * 90.39951 * 179.97438 * 19 18 16 21 21 Cl 1.73592 * 124.69452 * 180.02562 * 20 19 18 22 22 N 1.29515 * 110.60733 * 0.34854 * 20 19 18 23 23 C 1.31038 * 117.41735 * 359.72786 * 22 20 19 24 24 Cl 1.73608 * 123.04999 * 179.97438 * 23 22 20 25 25 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 27 27 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 28 28 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 29 29 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 30 30 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 31 31 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 32 32 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3210 -4.8120 -1.2197 14 6 1.8246 -6.1412 0.1269 15 7 0.8725 -7.2547 0.1269 16 6 1.3184 -8.5225 0.2292 17 8 2.5121 -8.7423 0.3210 18 6 0.3669 -9.6354 0.2297 19 16 -1.3865 -9.5044 0.1135 20 6 -1.5310 -11.2056 0.1952 21 17 -3.0339 -12.0730 0.1471 22 7 -0.3644 -11.7574 0.3046 23 6 0.6784 -10.9643 0.3278 24 17 2.3078 -11.5466 0.4704 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.6846 -3.7146 0.8906 28 1 2.6846 -3.7146 -0.8895 29 1 0.8668 -4.9036 -2.0127 30 1 2.5084 -6.2483 -0.7151 31 1 2.3911 -6.1471 1.0580 32 1 -0.0787 -7.0795 0.0541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568593025.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:43 Heat of formation + Delta-G solvation = -34.500510 kcal Electronic energy + Delta-G solvation = -21255.682209 eV Core-core repulsion = 17430.806272 eV Total energy + Delta-G solvation = -3824.875938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 339.000 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.68391 -39.26784 -38.21989 -37.46125 -36.27223 -35.97958 -35.78864 -34.34001 -31.74527 -29.39615 -28.17540 -25.98534 -24.33050 -23.33021 -21.90419 -21.16293 -19.31514 -18.97620 -18.50281 -18.08342 -17.46323 -17.11969 -16.32098 -16.03629 -15.74894 -15.61969 -14.80789 -14.70228 -14.49974 -14.38224 -14.30363 -13.95272 -13.94747 -13.69911 -13.08994 -12.82589 -12.33828 -12.17948 -12.09716 -12.04803 -11.63364 -11.44324 -11.32631 -11.28065 -10.91593 -10.88690 -10.39140 -9.54445 -9.31646 -8.90821 -8.44154 -7.68297 -4.46595 -1.66995 0.56372 0.78154 1.21484 1.66782 1.92621 2.10616 2.14800 2.38844 2.67575 2.89297 2.92096 3.19299 3.30841 3.35020 3.63716 3.71968 3.80676 3.90147 3.93624 4.06483 4.36032 4.41283 4.69587 4.83490 4.99913 5.05084 5.93806 6.21722 6.52356 6.68115 6.72109 7.39508 7.69260 8.79602 8.84878 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.002182 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.728279 B =12830.418358 C =14038.834280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.089 4.089 3 Si 1.042 2.958 4 H -0.223 1.223 5 H -0.272 1.272 6 H -0.224 1.224 7 C 0.383 3.617 8 H 0.287 0.713 9 N -0.518 5.518 10 C 0.040 3.960 11 C 0.089 3.911 12 H 0.112 0.888 13 O -0.569 6.569 14 C 0.103 3.897 15 N -0.757 5.757 16 C 0.540 3.460 17 O -0.674 6.674 18 C -0.561 4.561 19 S -0.156 6.156 20 C -0.335 4.335 21 Cl -0.114 7.114 22 N -0.487 5.487 23 C 0.012 3.988 24 Cl -0.117 7.117 25 H 0.379 0.621 26 H 0.438 0.562 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.395 0.605 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.724 63.601 -2.294 65.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.326 4.326 3 Si 0.853 3.147 4 H -0.145 1.145 5 H -0.196 1.196 6 H -0.146 1.146 7 C 0.199 3.801 8 H 0.302 0.698 9 N -0.106 5.106 10 C -0.081 4.081 11 C 0.029 3.971 12 H 0.130 0.870 13 O -0.377 6.377 14 C -0.022 4.022 15 N -0.410 5.410 16 C 0.350 3.650 17 O -0.573 6.573 18 C -0.685 4.685 19 S 0.068 5.932 20 C -0.594 4.594 21 Cl -0.087 7.087 22 N -0.201 5.201 23 C -0.169 4.169 24 Cl -0.091 7.091 25 H 0.199 0.801 26 H 0.280 0.720 27 H 0.187 0.813 28 H 0.184 0.816 29 H 0.245 0.755 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 12.739 62.969 -1.881 64.272 hybrid contribution -0.431 -1.153 -0.230 1.252 sum 12.308 61.816 -2.112 63.065 Atomic orbital electron populations 1.69719 1.09958 1.42246 0.95961 1.28900 0.97654 1.07535 0.98467 0.84079 0.78411 0.68211 0.83952 1.14549 1.19584 1.14595 1.26996 1.03969 0.81494 0.67615 0.69788 1.47276 1.15708 1.08134 1.39493 1.23681 0.94756 0.78014 1.11688 1.22345 0.94042 0.91572 0.89161 0.87025 1.86673 1.39140 1.95623 1.16294 1.21658 0.92527 0.86473 1.01542 1.45267 1.08727 1.04750 1.82294 1.16399 0.86244 0.81760 0.80563 1.90380 1.17698 1.85167 1.64069 1.21089 0.90068 0.93709 1.63636 1.79882 1.07542 1.08392 1.97354 1.21289 0.85382 0.88734 1.64030 1.97947 1.32386 1.79167 1.99248 1.63414 0.98573 1.42091 1.16060 1.18519 0.81163 0.88298 1.28965 1.98011 1.22787 1.90384 1.97899 0.80088 0.71990 0.81256 0.81571 0.75485 0.92852 0.92598 0.78316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 60. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 8.89 13.06 21.65 0.28 9.17 16 2 C -0.09 2.09 5.50 84.86 0.47 2.56 16 3 Si 1.04 -22.47 29.55 68.60 2.03 -20.45 16 4 H -0.22 4.57 7.11 99.48 0.71 5.27 16 5 H -0.27 4.00 7.11 99.48 0.71 4.71 16 6 H -0.22 4.55 7.11 99.48 0.71 5.26 16 7 C 0.38 -10.94 9.99 84.04 0.84 -10.10 16 8 H 0.29 -11.92 7.83 -2.91 -0.02 -11.94 16 9 N -0.52 10.16 5.55 -343.45 -1.91 8.25 16 10 C 0.04 -0.54 5.90 86.38 0.51 -0.03 16 11 C 0.09 0.65 3.09 30.60 0.09 0.74 16 12 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 13 O -0.57 -6.57 13.03 -148.98 -1.94 -8.51 16 14 C 0.10 2.78 5.34 86.38 0.46 3.24 16 15 N -0.76 -37.31 5.44 -467.33 -2.54 -39.86 16 16 C 0.54 37.03 7.78 86.37 0.67 37.70 16 17 O -0.67 -48.36 15.16 -4.40 -0.07 -48.42 16 18 C -0.56 -44.75 6.51 24.08 0.16 -44.59 16 19 S -0.16 -11.83 22.34 -56.49 -1.26 -13.10 16 20 C -0.33 -27.54 8.01 130.58 1.05 -26.50 16 21 Cl -0.11 -8.00 29.33 -2.72 -0.08 -8.08 16 22 N -0.49 -42.27 10.51 -183.35 -1.93 -44.20 16 23 C 0.01 1.03 7.41 84.48 0.63 1.66 16 24 Cl -0.12 -8.85 27.38 -2.72 -0.07 -8.92 16 25 H 0.38 -6.36 8.31 -92.71 -0.77 -7.13 16 26 H 0.44 -6.41 7.67 -92.71 -0.71 -7.12 16 27 H 0.17 -3.14 8.14 -2.38 -0.02 -3.16 16 28 H 0.17 -3.21 8.14 -2.39 -0.02 -3.23 16 29 H 0.39 2.30 9.05 -74.06 -0.67 1.63 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.38 19.16 7.53 -92.71 -0.70 18.46 16 Total: -1.00 -199.31 333.29 -3.47 -202.77 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -0.85 Total: 6.65 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 4.87 Total: -35.32 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -6.09 Total: -66.63 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -2.01 Total: -56.93 kcal Atomic # 14 Polarization: -22.47 SS G_CDS: 2.03 Total: -20.45 kcal Atomic # 16 Polarization: -11.83 SS G_CDS: -1.26 Total: -13.10 kcal Atomic # 17 Polarization: -16.85 SS G_CDS: -0.15 Total: -17.00 kcal Total: -199.31 -3.47 -202.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568593025.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.274 kcal (2) G-P(sol) polarization free energy of solvation -199.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -202.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds