Wall clock time and date at job start Tue Mar 31 2020 22:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46961 * 110.99735 * 2 1 4 4 C 1.53059 * 109.36302 * 183.18721 * 3 2 1 5 5 N 1.46952 * 109.36370 * 301.60193 * 4 3 2 6 6 C 1.46906 * 110.99889 * 183.18679 * 5 4 3 7 7 C 1.53039 * 109.45829 * 295.06713 * 6 5 4 8 8 C 1.53198 * 109.30867 * 178.61225 * 7 6 5 9 9 N 1.46927 * 108.77400 * 54.63860 * 8 7 6 10 10 C 1.34779 * 120.62657 * 126.41437 * 9 8 7 11 11 O 1.21285 * 119.99202 * 179.97438 * 10 9 8 12 12 C 1.50694 * 120.00453 * 359.97157 * 10 9 8 13 13 H 1.09000 * 109.47174 * 320.00544 * 12 10 9 14 14 N 1.46894 * 109.47376 * 200.00199 * 12 10 9 15 15 C 1.53000 * 109.46882 * 80.00033 * 12 10 9 16 16 C 1.53001 * 109.47062 * 184.99654 * 15 12 10 17 17 C 1.50700 * 109.47322 * 179.97438 * 16 15 12 18 18 H 1.08010 * 119.99984 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00239 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99950 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00143 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47105 * 90.00001 * 21 19 17 23 23 H 1.48503 * 109.47387 * 210.00509 * 21 19 17 24 24 H 1.48505 * 109.47114 * 330.00294 * 21 19 17 25 25 C 1.46925 * 118.73988 * 306.38586 * 9 8 7 26 26 C 1.53042 * 109.45897 * 174.99889 * 6 5 4 27 27 C 1.46961 * 110.88410 * 59.32054 * 5 4 3 28 28 C 1.46955 * 111.00246 * 123.80154 * 2 1 3 29 29 H 1.09001 * 109.47078 * 59.99734 * 1 2 3 30 30 H 1.09000 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47347 * 299.99632 * 1 2 3 32 32 H 1.09003 * 109.48904 * 63.22353 * 3 2 1 33 33 H 1.08997 * 109.51213 * 303.16639 * 3 2 1 34 34 H 1.08999 * 109.48651 * 181.63251 * 4 3 2 35 35 H 1.08996 * 109.48556 * 61.57139 * 4 3 2 36 36 H 1.08995 * 109.45995 * 55.02977 * 6 5 4 37 37 H 1.08992 * 109.49811 * 298.56378 * 7 6 5 38 38 H 1.08995 * 109.49694 * 58.66687 * 7 6 5 39 39 H 1.09000 * 109.58785 * 294.85190 * 8 7 6 40 40 H 1.08996 * 109.58453 * 174.42372 * 8 7 6 41 41 H 1.00894 * 111.00497 * 176.04384 * 14 12 10 42 42 H 1.00903 * 111.00353 * 300.00275 * 14 12 10 43 43 H 1.08997 * 109.47471 * 305.00448 * 15 12 10 44 44 H 1.09008 * 109.46913 * 65.00359 * 15 12 10 45 45 H 1.08997 * 109.47626 * 300.00699 * 16 15 12 46 46 H 1.09008 * 109.46681 * 60.00563 * 16 15 12 47 47 H 0.96995 * 119.99844 * 179.97438 * 20 19 17 48 48 H 1.08996 * 109.58855 * 293.82659 * 25 9 8 49 49 H 1.08993 * 109.58999 * 173.39748 * 25 9 8 50 50 H 1.08996 * 109.49948 * 301.33638 * 26 6 5 51 51 H 1.08999 * 109.49632 * 61.44070 * 26 6 5 52 52 H 1.09003 * 109.48904 * 60.64354 * 27 5 4 53 53 H 1.09002 * 109.49205 * 180.70887 * 27 5 4 54 54 H 1.09008 * 109.48713 * 296.78155 * 28 2 1 55 55 H 1.09002 * 109.48661 * 56.82117 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0500 0.5659 1.0597 6 6 5.5191 0.5659 1.0597 7 6 6.0289 -0.1801 -0.1754 8 6 7.5605 -0.1481 -0.1902 9 7 8.0569 -0.6826 1.0852 10 6 8.9512 -1.6907 1.1056 11 8 9.3537 -2.1228 2.1650 12 6 9.4509 -2.2811 -0.1878 13 1 8.6248 -2.3596 -0.8945 14 7 10.0068 -3.6169 0.0661 15 6 10.5389 -1.3787 -0.7734 16 6 10.9583 -1.9102 -2.1455 17 6 12.0295 -1.0212 -2.7227 18 1 12.3768 -0.1630 -2.1663 19 6 12.5663 -1.3031 -3.9609 20 7 12.1431 -2.3478 -4.6386 21 14 13.8945 -0.2015 -4.6760 22 1 15.2294 -0.7011 -4.2592 23 1 13.8023 -0.2129 -6.1581 24 1 13.7079 1.1855 -4.1791 25 6 7.5605 -0.0968 2.3378 26 6 6.0289 -0.1292 2.3242 27 6 3.5234 -0.8061 1.0597 28 6 1.9957 -0.7632 1.1400 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6937 1.8774 0.9174 33 1 1.6013 1.9133 -0.8600 34 1 3.9177 2.3449 -0.0512 35 1 3.8253 0.8481 -1.0106 36 1 5.8822 1.5934 1.0388 37 1 5.6869 -1.2144 -0.1426 38 1 5.6463 0.3018 -1.0751 39 1 7.9034 0.8791 -0.3142 40 1 7.9308 -0.7608 -1.0121 41 1 10.2900 -4.0603 -0.7947 42 1 10.7749 -3.5708 0.7189 43 1 10.1524 -0.3651 -0.8790 44 1 11.4019 -1.3710 -0.1075 45 1 11.3448 -2.9239 -2.0399 46 1 10.0953 -1.9180 -2.8114 47 1 12.5204 -2.5459 -5.5099 48 1 7.9033 0.9346 2.4199 49 1 7.9307 -0.6756 3.1839 50 1 5.6463 0.3888 3.2036 51 1 5.6870 -1.1642 2.3334 52 1 3.8253 -1.3115 0.1423 53 1 3.9178 -1.3470 1.9200 54 1 1.6937 -0.2821 2.0704 55 1 1.6010 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578533583.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:05 Heat of formation + Delta-G solvation = -50.409330 kcal Electronic energy + Delta-G solvation = -30943.009724 eV Core-core repulsion = 27013.298877 eV Total energy + Delta-G solvation = -3929.710847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.62867 -40.48434 -38.47848 -37.13857 -36.15139 -34.86744 -32.80047 -32.09770 -31.80535 -31.70063 -29.03668 -28.12757 -26.24350 -25.20967 -24.76341 -24.35033 -23.73354 -22.38482 -21.46491 -20.47401 -19.70849 -18.88818 -18.27645 -17.29751 -17.14647 -16.52722 -16.30114 -16.26062 -15.92864 -15.83082 -15.74223 -15.57340 -15.47145 -15.17789 -15.07484 -14.69923 -14.60031 -14.33961 -14.01711 -13.73581 -13.48798 -13.42937 -13.33084 -12.98462 -12.95049 -12.75697 -12.65477 -12.58171 -12.54379 -12.47082 -12.19510 -11.93670 -11.82418 -11.69370 -11.67019 -11.64026 -11.30540 -11.24868 -10.67115 -10.56387 -9.75430 -9.63156 -9.38339 -9.17805 -8.21599 -6.31928 1.39624 1.40213 1.50649 1.57497 1.94053 2.39728 2.84983 2.99881 3.12112 3.43884 3.66379 3.73101 3.82890 3.91016 4.02914 4.06188 4.09335 4.13138 4.20991 4.24116 4.26439 4.36085 4.39654 4.42912 4.55715 4.61430 4.62582 4.64955 4.66755 4.74606 4.80028 4.84355 4.85104 4.91275 4.92541 4.97397 5.00055 5.01353 5.06506 5.09627 5.16870 5.29487 5.45884 5.56620 5.63902 5.79803 5.96493 5.99152 6.03738 6.16046 6.18540 6.20501 6.34886 6.45173 6.83199 7.14639 7.37209 8.89209 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.002440 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.729084 B =11470.638797 C =12506.051182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.060 3.940 4 C 0.053 3.947 5 N -0.532 5.532 6 C 0.093 3.907 7 C -0.158 4.158 8 C 0.105 3.895 9 N -0.607 5.607 10 C 0.526 3.474 11 O -0.573 6.573 12 C 0.081 3.919 13 H 0.104 0.896 14 N -0.831 5.831 15 C -0.120 4.120 16 C 0.032 3.968 17 C -0.543 4.543 18 H 0.055 0.945 19 C 0.005 3.995 20 N -0.927 5.927 21 Si 0.958 3.042 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.265 1.265 25 C 0.111 3.889 26 C -0.113 4.113 27 C 0.052 3.948 28 C 0.061 3.939 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.352 0.648 42 H 0.344 0.656 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.001 0.999 46 H 0.002 0.998 47 H 0.264 0.736 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.095 0.905 51 H 0.057 0.943 52 H 0.035 0.965 53 H 0.081 0.919 54 H 0.038 0.962 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.206 8.881 11.129 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.286 5.286 3 C -0.069 4.069 4 C -0.075 4.075 5 N -0.255 5.255 6 C -0.016 4.016 7 C -0.197 4.197 8 C -0.017 4.017 9 N -0.340 5.340 10 C 0.315 3.685 11 O -0.452 6.452 12 C -0.034 4.034 13 H 0.122 0.878 14 N -0.362 5.362 15 C -0.160 4.160 16 C -0.005 4.005 17 C -0.581 4.581 18 H 0.073 0.927 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.783 3.217 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.189 1.189 25 C -0.011 4.011 26 C -0.151 4.151 27 C -0.076 4.076 28 C -0.068 4.068 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.114 0.886 51 H 0.075 0.925 52 H 0.053 0.947 53 H 0.099 0.901 54 H 0.056 0.944 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.742 8.395 11.830 27.823 hybrid contribution 1.732 0.461 -1.129 2.118 sum -22.010 8.856 10.701 26.027 Atomic orbital electron populations 1.22364 0.86164 1.02547 1.01073 1.62172 1.08889 1.14418 1.43085 1.22171 0.94397 0.89052 1.01238 1.22231 0.94446 0.98952 0.91899 1.62454 1.06736 1.13638 1.42691 1.21676 0.86569 1.00029 0.93320 1.22532 0.94780 1.01797 1.00632 1.21897 0.94453 1.00596 0.84800 1.48134 1.42622 1.34734 1.08486 1.20710 0.78235 0.78859 0.90714 1.90602 1.59169 1.61918 1.33557 1.21414 0.98389 0.90115 0.93488 0.87835 1.58764 1.40931 1.18459 1.18057 1.22136 0.96768 0.99328 0.97720 1.18947 0.95135 0.95347 0.91068 1.21592 1.21603 1.11917 1.02942 0.92692 1.25861 0.99183 0.96706 0.97560 1.70061 1.44162 1.28542 1.13902 0.85548 0.79211 0.79426 0.77481 1.20187 1.20664 1.18887 1.21671 0.94290 0.99043 0.86117 1.21874 0.93425 1.01001 0.98822 1.22211 0.94429 0.90020 1.00944 1.22139 0.94251 0.98696 0.91674 0.90676 0.90984 0.95390 0.94365 0.89354 0.89022 0.94221 0.88552 0.92214 0.89505 0.89532 0.89974 0.83289 0.84317 0.91505 0.93805 0.98080 0.97973 0.92734 0.89795 0.90533 0.88626 0.92479 0.94699 0.90052 0.94355 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.60 127.69 1.23 1.53 16 2 N -0.56 -8.54 4.97 -921.91 -4.58 -13.12 16 3 C 0.06 0.81 5.62 86.31 0.49 1.29 16 4 C 0.05 0.75 5.25 86.31 0.45 1.20 16 5 N -0.53 -8.29 4.70 -870.30 -4.09 -12.38 16 6 C 0.09 1.45 2.19 44.94 0.10 1.55 16 7 C -0.16 -2.84 4.64 30.67 0.14 -2.70 16 8 C 0.11 2.30 5.58 86.36 0.48 2.78 16 9 N -0.61 -15.75 2.97 -818.90 -2.43 -18.19 16 10 C 0.53 17.78 6.95 87.65 0.61 18.39 16 11 O -0.57 -22.87 15.66 -3.04 -0.05 -22.92 16 12 C 0.08 2.81 2.35 44.17 0.10 2.91 16 13 H 0.10 3.43 6.54 -2.39 -0.02 3.41 16 14 N -0.83 -29.67 8.94 -171.82 -1.54 -31.20 16 15 C -0.12 -4.71 4.55 30.59 0.14 -4.57 16 16 C 0.03 1.58 4.74 29.85 0.14 1.72 16 17 C -0.54 -29.60 9.11 25.60 0.23 -29.37 16 18 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.30 5.46 84.65 0.46 0.76 16 20 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 21 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 25 C 0.11 2.37 6.43 86.36 0.56 2.93 16 26 C -0.11 -1.92 5.12 30.67 0.16 -1.76 16 27 C 0.05 0.86 4.82 86.31 0.42 1.28 16 28 C 0.06 0.91 5.62 86.31 0.49 1.40 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 35 H 0.04 0.64 6.57 -2.39 -0.02 0.63 16 36 H 0.10 1.37 8.11 -2.39 -0.02 1.35 16 37 H 0.06 1.25 6.54 -2.39 -0.02 1.24 16 38 H 0.09 1.45 6.53 -2.39 -0.02 1.43 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.08 2.05 5.18 -2.39 -0.01 2.03 16 41 H 0.35 12.66 7.55 -89.70 -0.68 11.98 16 42 H 0.34 12.49 8.58 -89.69 -0.77 11.72 16 43 H 0.07 2.48 7.20 -2.39 -0.02 2.46 16 44 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 46 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 47 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.08 1.94 7.00 -2.39 -0.02 1.93 16 50 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.06 1.12 6.44 -2.39 -0.02 1.11 16 52 H 0.03 0.68 6.50 -2.39 -0.02 0.66 16 53 H 0.08 1.35 6.20 -2.39 -0.01 1.34 16 54 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 55 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 Total: -1.00 -65.83 407.09 -4.75 -70.58 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -0.56 Total: 36.60 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.19 Total: -0.66 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -12.35 Total: -128.77 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -65.83 -4.75 -70.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578533583.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.171 kcal (2) G-P(sol) polarization free energy of solvation -65.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds