Wall clock time and date at job start Tue Mar 31 2020 22:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38466 * 122.55893 * 2 1 4 4 C 1.33356 * 114.93377 * 180.02562 * 3 2 1 5 5 S 1.76201 * 125.19056 * 179.97438 * 4 3 2 6 6 O 1.42101 * 106.40237 * 336.46437 * 5 4 3 7 7 O 1.42098 * 106.39868 * 203.54131 * 5 4 3 8 8 N 1.65603 * 107.21701 * 90.00049 * 5 4 3 9 9 C 1.36931 * 120.00154 * 270.00063 * 8 5 4 10 10 H 1.08005 * 120.00327 * 39.36641 * 9 8 5 11 11 C 1.38814 * 119.99947 * 219.37052 * 9 8 5 12 12 N 1.31615 * 120.00107 * 20.04755 * 11 9 8 13 13 Si 1.86803 * 119.99610 * 200.04940 * 11 9 8 14 14 H 1.48490 * 109.47663 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46939 * 120.00047 * 13 11 9 16 16 H 1.48498 * 109.46970 * 239.99553 * 13 11 9 17 17 C 1.46499 * 119.99968 * 89.99973 * 8 5 4 18 18 C 1.50707 * 109.47169 * 263.01123 * 17 8 5 19 19 O 1.20822 * 119.99778 * 359.97438 * 18 17 8 20 20 O 1.34226 * 119.99956 * 180.02562 * 18 17 8 21 21 S 1.75873 * 109.61557 * 0.26416 * 4 3 2 22 22 C 1.33500 * 122.55899 * 180.02562 * 2 1 3 23 23 Cl 1.73600 * 125.21026 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47046 * 90.00139 * 1 2 3 25 25 H 1.09000 * 109.47297 * 209.99659 * 1 2 3 26 26 H 1.08999 * 109.46914 * 329.99999 * 1 2 3 27 27 H 1.08008 * 122.53404 * 359.97438 * 3 2 1 28 28 H 0.96999 * 119.99986 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.47043 * 23.00594 * 17 8 5 30 30 H 1.08998 * 109.47273 * 143.00778 * 17 8 5 31 31 H 0.96703 * 117.00012 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2522 1.1670 0.0000 4 6 3.5740 0.9901 -0.0005 5 16 4.7715 2.2826 -0.0013 6 8 4.1272 3.4262 -0.5456 7 8 5.9606 1.7274 -0.5462 8 7 5.1053 2.6425 1.5803 9 6 4.3735 3.5972 2.2344 10 1 3.3083 3.6678 2.0703 11 6 5.0006 4.4745 3.1085 12 7 6.2999 4.6682 3.0270 13 14 4.0004 5.3800 4.4005 14 1 2.5722 4.9906 4.2836 15 1 4.5015 5.0254 5.7526 16 1 4.1324 6.8443 4.1920 17 6 6.1837 1.9394 2.2796 18 6 5.6048 0.8015 3.0805 19 8 4.4138 0.5990 3.0686 20 8 6.4124 0.0136 3.8077 21 16 3.9393 -0.7302 -0.0087 22 6 2.2255 -1.1252 -0.0005 23 17 1.5687 -2.7321 -0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.7973 2.1467 -0.0004 28 1 6.7381 5.2810 3.6381 29 1 6.8936 1.5469 1.5515 30 1 6.6947 2.6316 2.9487 31 1 5.9951 -0.7030 4.3050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600292756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:12 Heat of formation + Delta-G solvation = -125.250448 kcal Electronic energy + Delta-G solvation = -23592.913757 eV Core-core repulsion = 19733.853562 eV Total energy + Delta-G solvation = -3859.060195 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.988 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.43965 -38.35304 -36.67320 -36.29290 -35.95891 -35.02319 -34.90619 -31.59185 -30.88492 -27.72338 -27.47982 -24.33811 -23.41657 -21.07545 -19.29248 -18.82757 -18.37027 -17.41969 -17.04982 -16.68193 -16.09138 -15.50603 -14.95641 -14.77712 -14.71696 -14.35513 -14.27459 -13.56579 -13.42469 -12.65293 -12.58738 -12.48545 -12.15380 -12.02274 -11.61651 -11.60692 -11.45081 -11.34149 -11.25053 -11.12084 -10.96653 -10.89538 -10.66704 -10.62953 -10.56972 -10.31961 -9.87920 -9.26879 -8.76328 -8.27497 -8.00535 -6.46256 -4.20028 0.57381 1.08433 1.30582 1.83988 2.20577 2.51771 2.99477 3.12825 3.22546 3.28270 3.57096 4.07917 4.32432 4.52839 4.91232 5.01410 5.16775 5.34147 5.45748 5.58550 5.87708 5.92824 5.96863 6.03438 6.13040 6.38120 6.58180 7.00183 7.13355 7.46303 8.19213 8.63823 8.76227 9.17065 10.58444 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.005172 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.948044 B = 5412.112252 C = 5601.614437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.108 4.108 3 C 0.004 3.996 4 C -0.740 4.740 5 S 2.665 3.335 6 O -0.947 6.947 7 O -0.987 6.987 8 N -0.817 5.817 9 C -0.285 4.285 10 H 0.094 0.906 11 C 0.042 3.958 12 N -0.860 5.860 13 Si 0.921 3.079 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.278 1.278 17 C 0.124 3.876 18 C 0.448 3.552 19 O -0.502 6.502 20 O -0.527 6.527 21 S 0.244 5.756 22 C -0.133 4.133 23 Cl -0.017 7.017 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.160 0.840 28 H 0.272 0.728 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 -10.451 -1.546 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.030 4.030 4 C -0.938 4.938 5 S 2.757 3.243 6 O -0.938 6.938 7 O -0.976 6.976 8 N -0.647 5.647 9 C -0.420 4.420 10 H 0.112 0.888 11 C -0.166 4.166 12 N -0.499 5.499 13 Si 0.747 3.253 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.006 4.006 18 C 0.288 3.712 19 O -0.388 6.388 20 O -0.338 6.338 21 S 0.510 5.490 22 C -0.278 4.278 23 Cl 0.012 6.988 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.178 0.822 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.169 0.831 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.879 -10.816 -2.573 11.775 hybrid contribution -2.547 0.023 1.486 2.949 sum -6.426 -10.793 -1.087 12.608 Atomic orbital electron populations 1.20568 0.88813 1.03444 1.02653 1.19065 0.98242 0.90785 1.04231 1.19626 0.90731 0.99533 0.93061 1.36492 1.17162 1.17214 1.22893 1.03934 0.72952 0.72638 0.74823 1.93487 1.77175 1.45739 1.77352 1.93459 1.44721 1.80707 1.78742 1.52270 1.43512 1.44628 1.24331 1.19105 0.91399 1.08366 1.23165 0.88848 1.25450 0.95975 0.95327 0.99846 1.69888 1.09330 1.34348 1.36359 0.85970 0.80288 0.79003 0.80089 1.19008 1.20546 1.20428 1.21011 0.90897 0.90703 0.98009 1.25293 0.85910 0.82339 0.77685 1.90653 1.16942 1.69492 1.61730 1.84623 1.45415 1.43965 1.59816 1.83962 0.99558 0.96047 1.69421 1.25544 0.99005 0.90031 1.13254 1.98337 1.84904 1.18632 1.96937 0.90786 0.91221 0.90602 0.82241 0.91769 0.87540 0.83097 0.74910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 9.89 36.01 0.36 -0.77 16 2 C -0.11 -1.66 5.81 -106.19 -0.62 -2.28 16 3 C 0.00 0.07 9.64 -41.20 -0.40 -0.33 16 4 C -0.74 -14.42 6.50 29.03 0.19 -14.23 16 5 S 2.66 60.15 5.80 -107.50 -0.62 59.52 16 6 O -0.95 -23.40 17.01 -57.17 -0.97 -24.38 16 7 O -0.99 -22.83 16.44 -57.17 -0.94 -23.77 16 8 N -0.82 -19.20 2.36 -61.08 -0.14 -19.35 16 9 C -0.29 -7.13 8.63 -15.06 -0.13 -7.26 16 10 H 0.09 2.29 7.91 -52.48 -0.41 1.88 16 11 C 0.04 1.03 5.04 -17.43 -0.09 0.94 16 12 N -0.86 -21.62 11.43 55.49 0.63 -20.98 16 13 Si 0.92 19.51 29.60 -169.99 -5.03 14.48 16 14 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 C 0.12 2.65 5.91 -5.19 -0.03 2.62 16 18 C 0.45 8.77 8.35 36.01 0.30 9.07 16 19 O -0.50 -10.67 16.96 -18.75 -0.32 -10.99 16 20 O -0.53 -8.30 13.42 -39.25 -0.53 -8.82 16 21 S 0.24 4.19 23.21 -107.50 -2.50 1.69 16 22 C -0.13 -2.06 7.07 29.07 0.21 -1.85 16 23 Cl -0.02 -0.21 28.29 -51.86 -1.47 -1.68 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.76 7.45 -51.93 -0.39 0.37 16 26 H 0.08 0.82 8.13 -51.93 -0.42 0.39 16 27 H 0.16 2.61 8.05 -52.48 -0.42 2.19 16 28 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 29 H 0.11 2.12 6.88 -51.93 -0.36 1.76 16 30 H 0.15 3.42 5.57 -51.93 -0.29 3.13 16 31 H 0.39 4.34 9.10 45.56 0.41 4.76 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -30.09 322.23 -8.67 -38.76 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -1.44 Total: 4.74 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.21 Total: -14.08 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.49 Total: -40.33 kcal Atomic # 8 Polarization: -65.20 SS G_CDS: -2.76 Total: -67.96 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Atomic # 16 Polarization: 64.33 SS G_CDS: -3.12 Total: 61.21 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.47 Total: -1.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.09 -8.67 -38.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600292756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.490 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds