Wall clock time and date at job start Tue Mar 31 2020 22:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38466 * 122.55893 * 2 1 4 4 C 1.33356 * 114.93377 * 180.02562 * 3 2 1 5 5 S 1.76201 * 125.19056 * 179.97438 * 4 3 2 6 6 O 1.42101 * 106.40237 * 336.46437 * 5 4 3 7 7 O 1.42098 * 106.39868 * 203.54131 * 5 4 3 8 8 N 1.65603 * 107.21701 * 90.00049 * 5 4 3 9 9 C 1.36931 * 120.00154 * 270.00063 * 8 5 4 10 10 H 1.08005 * 120.00327 * 39.36641 * 9 8 5 11 11 C 1.38814 * 119.99947 * 219.37052 * 9 8 5 12 12 N 1.31615 * 120.00107 * 20.04755 * 11 9 8 13 13 Si 1.86803 * 119.99610 * 200.04940 * 11 9 8 14 14 H 1.48490 * 109.47663 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46939 * 120.00047 * 13 11 9 16 16 H 1.48498 * 109.46970 * 239.99553 * 13 11 9 17 17 C 1.46499 * 119.99968 * 89.99973 * 8 5 4 18 18 C 1.50707 * 109.47169 * 263.01123 * 17 8 5 19 19 O 1.20822 * 119.99778 * 359.97438 * 18 17 8 20 20 O 1.34226 * 119.99956 * 180.02562 * 18 17 8 21 21 S 1.75873 * 109.61557 * 0.26416 * 4 3 2 22 22 C 1.33500 * 122.55899 * 180.02562 * 2 1 3 23 23 Cl 1.73600 * 125.21026 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47046 * 90.00139 * 1 2 3 25 25 H 1.09000 * 109.47297 * 209.99659 * 1 2 3 26 26 H 1.08999 * 109.46914 * 329.99999 * 1 2 3 27 27 H 1.08008 * 122.53404 * 359.97438 * 3 2 1 28 28 H 0.96999 * 119.99986 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.47043 * 23.00594 * 17 8 5 30 30 H 1.08998 * 109.47273 * 143.00778 * 17 8 5 31 31 H 0.96703 * 117.00012 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2522 1.1670 0.0000 4 6 3.5740 0.9901 -0.0005 5 16 4.7715 2.2826 -0.0013 6 8 4.1272 3.4262 -0.5456 7 8 5.9606 1.7274 -0.5462 8 7 5.1053 2.6425 1.5803 9 6 4.3735 3.5972 2.2344 10 1 3.3083 3.6678 2.0703 11 6 5.0006 4.4745 3.1085 12 7 6.2999 4.6682 3.0270 13 14 4.0004 5.3800 4.4005 14 1 2.5722 4.9906 4.2836 15 1 4.5015 5.0254 5.7526 16 1 4.1324 6.8443 4.1920 17 6 6.1837 1.9394 2.2796 18 6 5.6048 0.8015 3.0805 19 8 4.4138 0.5990 3.0686 20 8 6.4124 0.0136 3.8077 21 16 3.9393 -0.7302 -0.0087 22 6 2.2255 -1.1252 -0.0005 23 17 1.5687 -2.7321 -0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.7973 2.1467 -0.0004 28 1 6.7381 5.2810 3.6381 29 1 6.8936 1.5469 1.5515 30 1 6.6947 2.6316 2.9487 31 1 5.9951 -0.7030 4.3050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600292756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:11 Heat of formation + Delta-G solvation = -145.989331 kcal Electronic energy + Delta-G solvation = -23593.813062 eV Core-core repulsion = 19733.853562 eV Total energy + Delta-G solvation = -3859.959500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.988 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96410 -39.61058 -38.14553 -37.79008 -37.58927 -36.78738 -36.55624 -33.42441 -32.10540 -29.43390 -28.60192 -26.15064 -24.79085 -22.62779 -20.73028 -20.30622 -19.94933 -18.96828 -18.69829 -18.42488 -17.56106 -17.06526 -16.62871 -16.42759 -16.29307 -15.77974 -15.48471 -15.18258 -14.77058 -14.17122 -13.83849 -13.71636 -13.44093 -13.36401 -13.27208 -13.17745 -13.08042 -12.94968 -12.85063 -12.65256 -12.63340 -12.56399 -12.21388 -12.13764 -12.00682 -11.84762 -11.49409 -11.03220 -10.07804 -9.79628 -9.56228 -8.29705 -6.09252 -0.80640 -0.45597 -0.11194 0.49097 0.97947 1.22172 1.42993 1.46679 1.50299 1.62162 2.01832 2.40168 2.63822 2.77742 3.11469 3.58716 3.91098 4.06159 4.24267 4.26829 4.50065 4.60781 4.75707 4.84676 4.89671 5.03746 5.26205 5.27441 5.64094 5.77013 6.35416 6.91534 7.22197 7.32186 8.75504 Molecular weight = 338.99amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.005172 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.948044 B = 5412.112252 C = 5601.614437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.112 4.112 3 C 0.009 3.991 4 C -0.769 4.769 5 S 2.676 3.324 6 O -0.979 6.979 7 O -1.002 7.002 8 N -0.829 5.829 9 C -0.306 4.306 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.887 5.887 13 Si 0.974 3.026 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.277 1.277 17 C 0.116 3.884 18 C 0.458 3.542 19 O -0.519 6.519 20 O -0.515 6.515 21 S 0.240 5.760 22 C -0.126 4.126 23 Cl 0.014 6.986 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.165 0.835 28 H 0.276 0.724 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 -12.001 -0.901 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.026 4.026 4 C -0.971 4.971 5 S 2.772 3.228 6 O -0.970 6.970 7 O -0.992 6.992 8 N -0.659 5.659 9 C -0.440 4.440 10 H 0.106 0.894 11 C -0.201 4.201 12 N -0.526 5.526 13 Si 0.798 3.202 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.202 1.202 17 C -0.013 4.013 18 C 0.298 3.702 19 O -0.407 6.407 20 O -0.328 6.328 21 S 0.506 5.494 22 C -0.272 4.272 23 Cl 0.043 6.957 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.183 0.817 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.157 0.843 31 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -5.438 -12.357 -1.898 13.633 hybrid contribution -2.079 0.301 1.251 2.445 sum -7.517 -12.056 -0.647 14.222 Atomic orbital electron populations 1.20705 0.85932 1.04530 1.04275 1.19358 1.00143 0.89679 1.03485 1.19944 0.90357 1.00861 0.91404 1.35884 1.17125 1.17634 1.26496 1.02967 0.72940 0.72696 0.74222 1.93440 1.77715 1.47869 1.77951 1.93428 1.45907 1.80914 1.78902 1.52279 1.43780 1.45137 1.24686 1.19229 0.91512 1.09087 1.24168 0.89363 1.26134 0.96857 0.95974 1.01100 1.69956 1.10361 1.35157 1.37118 0.85167 0.79120 0.77892 0.78042 1.18756 1.19974 1.20237 1.20967 0.90717 0.91294 0.98336 1.24667 0.85542 0.82285 0.77723 1.90643 1.17577 1.70101 1.62426 1.84530 1.44581 1.44345 1.59320 1.83864 1.01289 0.94407 1.69826 1.25672 0.98061 0.91645 1.11842 1.98353 1.84264 1.16406 1.96675 0.88798 0.90068 0.89630 0.81716 0.91448 0.86797 0.84347 0.71992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.89 71.24 0.70 -1.23 16 2 C -0.11 -3.20 5.81 -20.88 -0.12 -3.32 16 3 C 0.01 0.31 9.64 21.22 0.20 0.51 16 4 C -0.77 -29.86 6.50 66.71 0.43 -29.42 16 5 S 2.68 123.32 5.80 -56.49 -0.33 122.99 16 6 O -0.98 -49.75 17.01 -128.00 -2.18 -51.93 16 7 O -1.00 -47.34 16.44 -128.00 -2.10 -49.45 16 8 N -0.83 -39.63 2.36 -347.17 -0.82 -40.45 16 9 C -0.31 -15.51 8.63 84.03 0.73 -14.79 16 10 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 11 C 0.00 0.22 5.04 84.86 0.43 0.64 16 12 N -0.89 -45.19 11.43 21.65 0.25 -44.95 16 13 Si 0.97 39.89 29.60 68.60 2.03 41.92 16 14 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 15 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 16 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 17 C 0.12 5.04 5.91 85.64 0.51 5.54 16 18 C 0.46 17.61 8.35 71.24 0.59 18.20 16 19 O -0.52 -21.66 16.96 21.98 0.37 -21.29 16 20 O -0.51 -15.27 13.42 -51.38 -0.69 -15.96 16 21 S 0.24 8.00 23.21 -56.49 -1.31 6.69 16 22 C -0.13 -3.63 7.07 66.75 0.47 -3.16 16 23 Cl 0.01 0.32 28.29 -2.72 -0.08 0.25 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 1.46 7.45 -2.39 -0.02 1.45 16 26 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 27 H 0.17 5.33 8.05 -2.91 -0.02 5.31 16 28 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 29 H 0.11 4.63 6.88 -2.39 -0.02 4.61 16 30 H 0.14 6.40 5.57 -2.39 -0.01 6.39 16 31 H 0.42 8.12 9.10 -74.06 -0.67 7.45 16 Total: -1.00 -64.28 322.23 -0.36 -64.65 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.54 Total: 14.54 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 3.95 Total: -27.01 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -0.57 Total: -85.39 kcal Atomic # 8 Polarization: -134.03 SS G_CDS: -4.60 Total: -138.63 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Atomic # 16 Polarization: 131.32 SS G_CDS: -1.64 Total: 129.68 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.08 Total: 0.25 kcal Total: -64.28 -0.36 -64.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600292756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.340 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds