Wall clock time and date at job start Tue Mar 31 2020 22:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28445 * 125.18235 * 2 1 4 4 C 1.30911 * 110.92905 * 180.02562 * 3 2 1 5 5 Br 1.89093 * 126.08200 * 180.02562 * 4 3 2 6 6 C 1.39758 * 107.83527 * 359.75600 * 4 3 2 7 7 C 1.36596 * 125.18002 * 180.02562 * 2 1 3 8 8 C 1.47142 * 126.87808 * 359.95578 * 7 2 1 9 9 O 1.21660 * 120.00019 * 5.30679 * 8 7 2 10 10 N 1.34777 * 120.00133 * 185.30098 * 8 7 2 11 11 C 1.40522 * 119.99911 * 174.74840 * 10 8 7 12 12 C 1.40663 * 126.08476 * 359.96355 * 11 10 8 13 13 N 1.30905 * 108.38529 * 179.74721 * 12 11 10 14 14 N 1.40062 * 108.41156 * 0.44644 * 13 12 11 15 15 C 1.37319 * 126.06427 * 179.81411 * 14 13 12 16 16 H 1.08001 * 119.99474 * 179.68602 * 15 14 13 17 17 C 1.38983 * 120.00381 * 359.41281 * 15 14 13 18 18 N 1.31303 * 119.99774 * 0.27503 * 17 15 14 19 19 Si 1.86797 * 120.00169 * 180.27514 * 17 15 14 20 20 H 1.48497 * 109.47187 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47139 * 119.99970 * 19 17 15 22 22 H 1.48496 * 109.47246 * 239.99873 * 19 17 15 23 23 C 1.35693 * 126.08564 * 180.02562 * 11 10 8 24 24 H 1.09001 * 109.46657 * 274.73121 * 1 2 3 25 25 H 1.09003 * 109.46953 * 34.72756 * 1 2 3 26 26 H 1.08994 * 109.47270 * 154.72920 * 1 2 3 27 27 H 1.08001 * 127.31932 * 180.27713 * 6 4 3 28 28 H 0.97000 * 119.99914 * 354.75186 * 10 8 7 29 29 H 1.08006 * 125.81189 * 0.03788 * 12 11 10 30 30 H 0.96998 * 119.99872 * 179.97438 * 18 17 15 31 31 H 1.08004 * 126.24624 * 359.96992 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2050 1.0498 0.0000 4 6 3.4739 0.7275 -0.0005 5 35 4.9295 1.9345 -0.0001 6 6 3.5612 -0.6673 0.0047 7 6 2.2520 -1.1165 -0.0005 8 6 1.7987 -2.5163 -0.0002 9 8 0.6132 -2.7719 -0.0969 10 7 2.6968 -3.5155 0.1070 11 6 2.2580 -4.8458 0.2185 12 6 0.9195 -5.2782 0.2324 13 7 0.9081 -6.5824 0.3440 14 7 2.2328 -7.0318 0.4157 15 6 2.6376 -8.3380 0.5414 16 1 3.6903 -8.5754 0.5826 17 6 1.6925 -9.3539 0.6213 18 7 0.4125 -9.0652 0.5712 19 14 2.2431 -11.1299 0.8001 20 1 3.7266 -11.1873 0.8325 21 1 1.6988 -11.6922 2.0622 22 1 1.7415 -11.9219 -0.3515 23 6 3.0499 -5.9417 0.3329 24 1 -0.3633 0.0848 1.0242 25 1 -0.3633 0.8446 -0.5855 26 1 -0.3633 -0.9293 -0.4387 27 1 4.4593 -1.2671 0.0099 28 1 3.6462 -3.3163 0.1074 29 1 0.0493 -4.6427 0.1586 30 1 -0.2471 -9.7742 0.6266 31 1 4.1297 -5.9499 0.3544 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647158188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:44 Heat of formation + Delta-G solvation = 137.298621 kcal Electronic energy + Delta-G solvation = -20191.204260 eV Core-core repulsion = 16751.323136 eV Total energy + Delta-G solvation = -3439.881124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.007 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.76335 -39.95966 -38.53306 -34.65724 -33.72533 -33.25173 -31.36378 -30.97553 -30.26130 -27.85750 -26.81222 -25.12251 -23.35757 -21.73902 -21.04050 -19.85343 -19.51944 -17.95158 -17.41297 -16.54385 -15.95622 -15.53586 -15.30508 -14.67533 -14.49480 -13.99231 -13.89590 -13.62707 -13.26066 -13.18096 -12.98935 -12.45711 -11.76381 -11.54944 -11.42046 -11.34017 -11.24750 -11.01567 -10.55346 -10.48649 -10.35849 -9.55664 -9.36508 -9.25202 -9.07551 -8.91423 -8.15711 -6.82251 -6.63269 -4.30814 1.06933 1.13511 2.07587 2.38670 2.87898 3.01530 3.07640 3.15847 3.42304 3.64295 3.80272 4.32633 4.35629 4.52437 4.86605 4.95278 5.01089 5.07093 5.15744 5.32195 5.53685 5.92406 6.15823 6.31269 6.40203 6.74561 6.85552 6.94544 7.13436 7.62301 7.77114 7.98719 8.14558 8.44806 8.66231 9.28144 9.56718 10.32585 Molecular weight = 339.01amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.002377 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.464175 B =11777.761067 C =12732.151398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.245 5.245 3 N -0.252 5.252 4 C 0.018 3.982 5 Br 0.027 6.973 6 C -0.167 4.167 7 C -0.007 4.007 8 C 0.571 3.429 9 O -0.534 6.534 10 N -0.598 5.598 11 C -0.064 4.064 12 C -0.028 4.028 13 N -0.260 5.260 14 N -0.139 5.139 15 C -0.321 4.321 16 H 0.118 0.882 17 C 0.046 3.954 18 N -0.768 5.768 19 Si 0.936 3.064 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.079 4.079 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.124 0.876 27 H 0.170 0.830 28 H 0.401 0.599 29 H 0.176 0.824 30 H 0.275 0.725 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.680 17.915 -0.857 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.033 5.033 3 N -0.088 5.088 4 C -0.217 4.217 5 Br 0.109 6.891 6 C -0.197 4.197 7 C -0.136 4.136 8 C 0.356 3.644 9 O -0.412 6.412 10 N -0.239 5.239 11 C -0.170 4.170 12 C -0.204 4.204 13 N -0.091 5.091 14 N 0.094 4.906 15 C -0.454 4.454 16 H 0.136 0.864 17 C -0.172 4.172 18 N -0.394 5.394 19 Si 0.760 3.240 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.230 4.230 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.142 0.858 27 H 0.188 0.812 28 H 0.235 0.765 29 H 0.193 0.807 30 H 0.086 0.914 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.496 17.900 -0.823 18.743 hybrid contribution 1.536 -0.677 0.056 1.680 sum 7.032 17.223 -0.767 18.619 Atomic orbital electron populations 1.22589 0.71492 1.07009 1.05069 1.45656 1.08165 1.01369 1.48139 1.73219 1.02435 1.13905 1.19201 1.23295 0.91801 0.93252 1.13309 1.96708 1.34536 1.59766 1.98093 1.22075 0.96518 0.92906 1.08229 1.21565 0.90505 0.90324 1.11240 1.16544 0.85953 0.82147 0.79789 1.90674 1.16142 1.83301 1.51106 1.42077 1.08678 1.04259 1.68926 1.17183 0.93753 0.81608 1.24455 1.24105 0.95583 0.93191 1.07503 1.78279 0.96552 1.08734 1.25538 1.44585 1.03241 1.04495 1.38312 1.19963 0.94502 0.78388 1.52529 0.86404 1.25665 0.94828 1.01224 0.95443 1.70223 1.00312 1.33879 1.34992 0.85742 0.79467 0.80281 0.78545 1.18618 1.19873 1.19861 1.21260 0.95842 0.86573 1.19365 0.89355 0.88798 0.85759 0.81238 0.76459 0.80688 0.91410 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.01 59.85 0.66 1.48 16 2 N -0.24 -3.30 3.75 -63.89 -0.24 -3.54 16 3 N -0.25 -3.46 11.90 31.88 0.38 -3.08 16 4 C 0.02 0.23 7.72 -17.38 -0.13 0.09 16 5 Br 0.03 0.28 34.11 -68.01 -2.32 -2.04 16 6 C -0.17 -2.03 10.49 -38.95 -0.41 -2.44 16 7 C -0.01 -0.10 6.96 -82.07 -0.57 -0.67 16 8 C 0.57 9.63 7.76 -12.65 -0.10 9.53 16 9 O -0.53 -10.34 11.75 5.22 0.06 -10.28 16 10 N -0.60 -10.10 5.45 -11.05 -0.06 -10.16 16 11 C -0.06 -1.41 6.90 -83.87 -0.58 -1.98 16 12 C -0.03 -0.71 10.85 -17.03 -0.18 -0.89 16 13 N -0.26 -7.30 10.39 30.80 0.32 -6.98 16 14 N -0.14 -3.69 3.74 -11.41 -0.04 -3.73 16 15 C -0.32 -8.22 10.25 -14.82 -0.15 -8.37 16 16 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 17 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 18 N -0.77 -20.85 11.81 55.49 0.66 -20.20 16 19 Si 0.94 18.36 29.55 -169.99 -5.02 13.34 16 20 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 23 C -0.08 -1.77 11.49 -16.39 -0.19 -1.96 16 24 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.12 1.47 5.96 -51.93 -0.31 1.16 16 27 H 0.17 1.55 7.58 -52.49 -0.40 1.15 16 28 H 0.40 5.20 7.86 -40.82 -0.32 4.88 16 29 H 0.18 4.28 5.93 -52.48 -0.31 3.96 16 30 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.15 2.72 8.06 -52.48 -0.42 2.29 16 LS Contribution 300.50 15.07 4.53 4.53 Total: -1.00 -32.05 300.50 -5.65 -37.69 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -2.15 Total: 8.60 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.75 Total: -4.16 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 1.01 Total: -47.69 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.06 Total: -10.28 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Atomic # 35 Polarization: 0.28 SS G_CDS: -2.32 Total: -2.04 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.05 -5.65 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647158188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.990 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds