Wall clock time and date at job start Tue Mar 31 2020 22:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28445 * 125.18235 * 2 1 4 4 C 1.30911 * 110.92905 * 180.02562 * 3 2 1 5 5 Br 1.89093 * 126.08200 * 180.02562 * 4 3 2 6 6 C 1.39758 * 107.83527 * 359.75600 * 4 3 2 7 7 C 1.36596 * 125.18002 * 180.02562 * 2 1 3 8 8 C 1.47142 * 126.87808 * 359.95578 * 7 2 1 9 9 O 1.21660 * 120.00019 * 5.30679 * 8 7 2 10 10 N 1.34777 * 120.00133 * 185.30098 * 8 7 2 11 11 C 1.40522 * 119.99911 * 174.74840 * 10 8 7 12 12 C 1.40663 * 126.08476 * 359.96355 * 11 10 8 13 13 N 1.30905 * 108.38529 * 179.74721 * 12 11 10 14 14 N 1.40062 * 108.41156 * 0.44644 * 13 12 11 15 15 C 1.37319 * 126.06427 * 179.81411 * 14 13 12 16 16 H 1.08001 * 119.99474 * 179.68602 * 15 14 13 17 17 C 1.38983 * 120.00381 * 359.41281 * 15 14 13 18 18 N 1.31303 * 119.99774 * 0.27503 * 17 15 14 19 19 Si 1.86797 * 120.00169 * 180.27514 * 17 15 14 20 20 H 1.48497 * 109.47187 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47139 * 119.99970 * 19 17 15 22 22 H 1.48496 * 109.47246 * 239.99873 * 19 17 15 23 23 C 1.35693 * 126.08564 * 180.02562 * 11 10 8 24 24 H 1.09001 * 109.46657 * 274.73121 * 1 2 3 25 25 H 1.09003 * 109.46953 * 34.72756 * 1 2 3 26 26 H 1.08994 * 109.47270 * 154.72920 * 1 2 3 27 27 H 1.08001 * 127.31932 * 180.27713 * 6 4 3 28 28 H 0.97000 * 119.99914 * 354.75186 * 10 8 7 29 29 H 1.08006 * 125.81189 * 0.03788 * 12 11 10 30 30 H 0.96998 * 119.99872 * 179.97438 * 18 17 15 31 31 H 1.08004 * 126.24624 * 359.96992 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2050 1.0498 0.0000 4 6 3.4739 0.7275 -0.0005 5 35 4.9295 1.9345 -0.0001 6 6 3.5612 -0.6673 0.0047 7 6 2.2520 -1.1165 -0.0005 8 6 1.7987 -2.5163 -0.0002 9 8 0.6132 -2.7719 -0.0969 10 7 2.6968 -3.5155 0.1070 11 6 2.2580 -4.8458 0.2185 12 6 0.9195 -5.2782 0.2324 13 7 0.9081 -6.5824 0.3440 14 7 2.2328 -7.0318 0.4157 15 6 2.6376 -8.3380 0.5414 16 1 3.6903 -8.5754 0.5826 17 6 1.6925 -9.3539 0.6213 18 7 0.4125 -9.0652 0.5712 19 14 2.2431 -11.1299 0.8001 20 1 3.7266 -11.1873 0.8325 21 1 1.6988 -11.6922 2.0622 22 1 1.7415 -11.9219 -0.3515 23 6 3.0499 -5.9417 0.3329 24 1 -0.3633 0.0848 1.0242 25 1 -0.3633 0.8446 -0.5855 26 1 -0.3633 -0.9293 -0.4387 27 1 4.4593 -1.2671 0.0099 28 1 3.6462 -3.3163 0.1074 29 1 0.0493 -4.6427 0.1586 30 1 -0.2471 -9.7742 0.6266 31 1 4.1297 -5.9499 0.3544 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647158188.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:44 Heat of formation + Delta-G solvation = 115.095627 kcal Electronic energy + Delta-G solvation = -20192.167054 eV Core-core repulsion = 16751.323136 eV Total energy + Delta-G solvation = -3440.843918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.007 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.79079 -41.68721 -40.07836 -36.14235 -35.16647 -34.59997 -32.60447 -32.08065 -31.86716 -29.56435 -27.75804 -26.90048 -24.67223 -22.98001 -22.69393 -21.25449 -21.07010 -19.44412 -18.86840 -17.57684 -17.42410 -17.11670 -16.84804 -16.04573 -15.90017 -15.42791 -15.04132 -14.94783 -14.87816 -14.63354 -14.05533 -13.48594 -13.39166 -13.28509 -12.93356 -12.83270 -12.42815 -12.12600 -12.01533 -11.94346 -11.37603 -11.06219 -10.99148 -10.79998 -10.42541 -10.09689 -10.01305 -8.55914 -8.46198 -6.23319 0.01199 0.15136 1.07787 1.29504 1.33285 1.43309 1.60975 1.70318 1.98874 2.06264 2.26474 2.56378 2.87087 3.10673 3.38103 3.57947 4.00315 4.26345 4.31495 4.34449 4.46359 4.58259 4.65466 5.00097 5.01768 5.05224 5.28912 5.37011 5.39808 5.96270 6.27985 6.51733 6.68311 6.73599 7.16999 7.46117 7.67748 8.53179 Molecular weight = 339.01amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.002377 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.464175 B =11777.761067 C =12732.151398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.248 5.248 3 N -0.259 5.259 4 C 0.004 3.996 5 Br 0.051 6.949 6 C -0.147 4.147 7 C -0.029 4.029 8 C 0.577 3.423 9 O -0.562 6.562 10 N -0.592 5.592 11 C -0.047 4.047 12 C -0.053 4.053 13 N -0.310 5.310 14 N -0.167 5.167 15 C -0.352 4.352 16 H 0.143 0.857 17 C -0.006 4.006 18 N -0.824 5.824 19 Si 1.018 2.982 20 H -0.240 1.240 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.072 4.072 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.202 0.798 28 H 0.423 0.577 29 H 0.172 0.828 30 H 0.276 0.724 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.376 18.784 -0.789 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.037 5.037 3 N -0.096 5.096 4 C -0.230 4.230 5 Br 0.132 6.868 6 C -0.177 4.177 7 C -0.158 4.158 8 C 0.364 3.636 9 O -0.441 6.441 10 N -0.236 5.236 11 C -0.153 4.153 12 C -0.228 4.228 13 N -0.142 5.142 14 N 0.064 4.936 15 C -0.483 4.483 16 H 0.160 0.840 17 C -0.218 4.218 18 N -0.452 5.452 19 Si 0.837 3.163 20 H -0.163 1.163 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.223 4.223 24 H 0.118 0.882 25 H 0.136 0.864 26 H 0.127 0.873 27 H 0.219 0.781 28 H 0.261 0.739 29 H 0.189 0.811 30 H 0.086 0.914 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 8.238 18.812 -0.758 20.551 hybrid contribution 0.744 -0.650 0.011 0.988 sum 8.982 18.161 -0.747 20.275 Atomic orbital electron populations 1.22724 0.70460 1.07194 1.06157 1.45920 1.08941 1.01102 1.47779 1.73225 1.03121 1.13971 1.19251 1.23677 0.92131 0.94131 1.13032 1.96737 1.32976 1.59039 1.98020 1.22481 0.96634 0.93004 1.05598 1.21208 0.91588 0.89031 1.13927 1.16883 0.85434 0.83163 0.78157 1.90672 1.17594 1.84027 1.51840 1.41911 1.09967 1.02322 1.69374 1.17193 0.92366 0.83726 1.22028 1.24211 0.97177 0.92818 1.08614 1.78173 0.98639 1.10188 1.27188 1.44853 1.03115 1.05691 1.39937 1.20665 0.95878 0.78604 1.53115 0.84017 1.26852 0.94561 1.06076 0.94290 1.70396 1.01949 1.35442 1.37374 0.84548 0.80056 0.73648 0.78055 1.16282 1.19917 1.19911 1.22015 0.97647 0.85559 1.17093 0.88210 0.86440 0.87331 0.78141 0.73901 0.81129 0.91424 0.79155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 11.01 127.77 1.41 2.90 16 2 N -0.25 -6.34 3.75 -356.05 -1.33 -7.67 16 3 N -0.26 -6.59 11.90 -53.06 -0.63 -7.23 16 4 C 0.00 0.09 7.72 85.20 0.66 0.75 16 5 Br 0.05 0.91 34.11 -20.37 -0.69 0.21 16 6 C -0.15 -3.15 10.49 22.68 0.24 -2.91 16 7 C -0.03 -0.76 6.96 40.78 0.28 -0.48 16 8 C 0.58 18.93 7.76 86.58 0.67 19.60 16 9 O -0.56 -22.01 11.75 -4.22 -0.05 -22.06 16 10 N -0.59 -18.91 5.45 -307.11 -1.67 -20.58 16 11 C -0.05 -2.02 6.90 37.75 0.26 -1.76 16 12 C -0.05 -2.72 10.85 85.42 0.93 -1.79 16 13 N -0.31 -18.03 10.39 -56.45 -0.59 -18.62 16 14 N -0.17 -8.94 3.74 -190.01 -0.71 -9.64 16 15 C -0.35 -17.97 10.25 84.01 0.86 -17.11 16 16 H 0.14 6.24 7.83 -2.91 -0.02 6.22 16 17 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 18 N -0.82 -46.46 11.81 21.66 0.26 -46.20 16 19 Si 1.02 37.56 29.55 68.60 2.03 39.58 16 20 H -0.24 -7.88 7.11 99.48 0.71 -7.18 16 21 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 23 C -0.07 -3.15 11.49 83.38 0.96 -2.19 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 2.60 5.96 -2.39 -0.01 2.59 16 27 H 0.20 2.81 7.58 -2.91 -0.02 2.79 16 28 H 0.42 9.61 7.86 -92.71 -0.73 8.89 16 29 H 0.17 8.75 5.93 -2.91 -0.02 8.73 16 30 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.19 6.35 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -72.04 300.50 3.82 -68.22 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.48 Total: 26.82 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 6.73 Total: -2.83 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -4.68 Total: -109.95 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.58 kcal Atomic # 35 Polarization: 0.91 SS G_CDS: -0.69 Total: 0.21 kcal Total: -72.04 3.82 -68.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647158188.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.315 kcal (2) G-P(sol) polarization free energy of solvation -72.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds