Wall clock time and date at job start Tue Mar 31 2020 22:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99981 * 2 1 4 4 C 1.46904 * 111.00168 * 123.95180 * 2 1 3 5 5 H 1.09003 * 109.46594 * 54.99609 * 4 2 1 6 6 C 1.52995 * 109.47121 * 295.00069 * 4 2 1 7 7 C 1.53002 * 109.47030 * 179.97438 * 6 4 2 8 8 C 1.52995 * 109.46978 * 60.00383 * 7 6 4 9 9 C 1.53008 * 109.46820 * 299.99475 * 8 7 6 10 10 C 1.52996 * 109.47137 * 174.99700 * 4 2 1 11 11 H 1.09003 * 109.46732 * 60.00628 * 10 4 2 12 12 N 1.46499 * 109.47449 * 300.00356 * 10 4 2 13 13 C 1.34769 * 120.00319 * 155.00330 * 12 10 4 14 14 O 1.21585 * 119.99930 * 354.83182 * 13 12 10 15 15 N 1.34772 * 120.00223 * 174.84055 * 13 12 10 16 16 C 1.47084 * 120.88303 * 184.71092 * 15 13 12 17 17 C 1.53688 * 108.27832 * 128.75303 * 16 15 13 18 18 N 1.46901 * 109.25760 * 54.08256 * 17 16 15 19 19 C 1.46903 * 110.99836 * 172.60588 * 18 17 16 20 20 C 1.50700 * 109.46914 * 59.44790 * 19 18 17 21 21 H 1.08001 * 120.00334 * 355.09962 * 20 19 18 22 22 C 1.37876 * 119.99893 * 175.09108 * 20 19 18 23 23 N 1.31516 * 120.00297 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99934 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47268 * 89.99744 * 24 22 20 26 26 H 1.48500 * 109.47168 * 210.00133 * 24 22 20 27 27 H 1.48499 * 109.47101 * 329.99573 * 24 22 20 28 28 C 1.46898 * 111.26887 * 296.75702 * 18 17 16 29 29 C 1.47082 * 120.88312 * 4.98911 * 15 13 12 30 30 H 1.09001 * 109.46765 * 296.04466 * 1 2 3 31 31 H 1.09001 * 109.47232 * 56.04417 * 1 2 3 32 32 H 1.09003 * 109.47308 * 176.04891 * 1 2 3 33 33 H 1.09002 * 109.47140 * 183.95522 * 3 2 1 34 34 H 1.09005 * 109.47352 * 303.95005 * 3 2 1 35 35 H 1.09002 * 109.47718 * 63.95296 * 3 2 1 36 36 H 1.09003 * 109.47529 * 299.99849 * 6 4 2 37 37 H 1.09006 * 109.47452 * 59.99805 * 6 4 2 38 38 H 1.09003 * 109.47178 * 179.97438 * 7 6 4 39 39 H 1.08993 * 109.47386 * 299.99951 * 7 6 4 40 40 H 1.08993 * 109.47415 * 59.99586 * 8 7 6 41 41 H 1.09005 * 109.47287 * 180.02562 * 8 7 6 42 42 H 1.09005 * 109.46657 * 179.97438 * 9 8 7 43 43 H 1.08993 * 109.47217 * 300.00232 * 9 8 7 44 44 H 0.97003 * 119.99666 * 334.99641 * 12 10 4 45 45 H 1.09004 * 109.62452 * 248.52316 * 16 15 13 46 46 H 1.09000 * 109.62519 * 9.09854 * 16 15 13 47 47 H 1.09001 * 109.64914 * 294.07805 * 17 16 15 48 48 H 1.09001 * 109.42186 * 173.95201 * 17 16 15 49 49 H 1.09003 * 109.46580 * 179.44548 * 19 18 17 50 50 H 1.09003 * 109.47186 * 299.44726 * 19 18 17 51 51 H 0.96998 * 120.00218 * 180.02562 * 23 22 20 52 52 H 1.09003 * 109.49183 * 303.14479 * 28 18 17 53 53 H 1.08999 * 109.49139 * 183.06448 * 28 18 17 54 54 H 1.09004 * 109.62122 * 350.89139 * 29 15 13 55 55 H 1.08995 * 109.63371 * 111.47576 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.5753 -1.7716 1.1240 6 6 1.6092 -0.0695 2.4439 7 6 2.1570 -0.8676 3.6288 8 6 3.6813 -0.9506 3.5266 9 6 4.0676 -1.6472 2.2202 10 6 3.5198 -0.8486 1.0351 11 1 3.9399 0.1572 1.0487 12 7 3.8898 -1.5155 -0.2157 13 6 5.0915 -1.2764 -0.7770 14 8 5.8303 -0.4381 -0.2979 15 7 5.4742 -1.9665 -1.8696 16 6 6.8203 -1.7958 -2.4371 17 6 7.4504 -3.1869 -2.6101 18 7 6.5466 -4.0333 -3.4004 19 6 7.1846 -5.3127 -3.7383 20 6 7.5588 -6.0375 -2.4712 21 1 7.4169 -5.5592 -1.5134 22 6 8.0823 -7.3115 -2.5347 23 7 8.4085 -7.9444 -1.4290 24 14 8.3282 -8.1387 -4.1915 25 1 9.6852 -7.8233 -4.7057 26 1 8.1868 -9.6088 -4.0366 27 1 7.3080 -7.6416 -5.1492 28 6 5.2720 -4.2488 -2.7024 29 6 4.5547 -2.9057 -2.5297 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0708 33 1 3.0828 1.3432 -0.0709 34 1 1.5899 1.9163 -0.8525 35 1 1.7044 1.8724 0.9233 36 1 2.0292 0.9363 2.4575 37 1 0.5232 -0.0106 2.5170 38 1 1.8821 -0.3711 4.5594 39 1 1.7366 -1.8731 3.6151 40 1 4.1017 0.0549 3.5403 41 1 4.0716 -1.5196 4.3705 42 1 5.1536 -1.7059 2.1473 43 1 3.6472 -2.6527 2.2065 44 1 3.2698 -2.1292 -0.6399 45 1 6.7494 -1.2997 -3.4051 46 1 7.4300 -1.1978 -1.7598 47 1 7.6113 -3.6406 -1.6321 48 1 8.4046 -3.0907 -3.1282 49 1 6.4902 -5.9238 -4.3150 50 1 8.0816 -5.1265 -4.3290 51 1 8.7770 -8.8404 -1.4737 52 1 5.4633 -4.6876 -1.7232 53 1 4.6463 -4.9227 -3.2876 54 1 3.6659 -3.0419 -1.9135 55 1 4.2702 -2.5143 -3.5064 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647335829.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:03 Heat of formation + Delta-G solvation = -33.683795 kcal Electronic energy + Delta-G solvation = -31689.055025 eV Core-core repulsion = 27760.069452 eV Total energy + Delta-G solvation = -3928.985573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69259 -40.43407 -38.98694 -36.69993 -35.97156 -35.21092 -34.27890 -32.07512 -30.94794 -30.51717 -29.56594 -28.50864 -27.10331 -25.26248 -24.64060 -24.10394 -23.23167 -21.99103 -21.81727 -20.98266 -20.22051 -19.14674 -18.71046 -17.61382 -17.01944 -16.62439 -16.45588 -16.17751 -16.01070 -15.81343 -15.74417 -15.43713 -15.32375 -15.10373 -14.81632 -14.61614 -14.44291 -14.20544 -13.92366 -13.83513 -13.74817 -13.34180 -13.04788 -13.01223 -12.98689 -12.70163 -12.59407 -12.46092 -12.26535 -12.18033 -12.08448 -12.02713 -11.94621 -11.79199 -11.71165 -11.62097 -11.57195 -11.21220 -11.08689 -10.79775 -10.11345 -9.51782 -9.16821 -9.00208 -8.31618 -6.37980 1.37909 1.38571 1.50419 1.67222 2.18905 2.34238 2.87543 3.03125 3.03465 3.25665 3.57755 3.83671 4.00642 4.01370 4.06227 4.11105 4.17957 4.19738 4.28338 4.34639 4.37229 4.41408 4.45297 4.51744 4.54453 4.60618 4.65010 4.68597 4.77119 4.83645 4.86664 4.88860 5.00377 5.03742 5.06237 5.07908 5.08478 5.09942 5.10867 5.13359 5.20367 5.21419 5.28832 5.42646 5.48211 5.50888 5.65401 5.95324 6.07765 6.11267 6.14682 6.30078 6.34956 6.69143 7.01922 7.29350 7.60459 8.84901 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016438 B = 0.002736 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.007985 B =10233.294447 C =10711.680064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.022 3.978 4 C 0.084 3.916 5 H 0.095 0.905 6 C -0.143 4.143 7 C -0.110 4.110 8 C -0.114 4.114 9 C -0.130 4.130 10 C 0.176 3.824 11 H 0.067 0.933 12 N -0.719 5.719 13 C 0.706 3.294 14 O -0.638 6.638 15 N -0.630 5.630 16 C 0.146 3.854 17 C 0.055 3.945 18 N -0.523 5.523 19 C 0.159 3.841 20 C -0.551 4.551 21 H 0.027 0.973 22 C 0.009 3.991 23 N -0.950 5.950 24 Si 0.953 3.047 25 H -0.269 1.269 26 H -0.287 1.287 27 H -0.238 1.238 28 C 0.049 3.951 29 C 0.129 3.871 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.068 0.932 44 H 0.405 0.595 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.004 0.996 48 H 0.081 0.919 49 H 0.041 0.959 50 H 0.031 0.969 51 H 0.265 0.735 52 H 0.008 0.992 53 H 0.091 0.909 54 H 0.098 0.902 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.781 16.726 3.776 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.126 4.126 4 C -0.025 4.025 5 H 0.114 0.886 6 C -0.183 4.183 7 C -0.148 4.148 8 C -0.152 4.152 9 C -0.169 4.169 10 C 0.070 3.930 11 H 0.085 0.915 12 N -0.374 5.374 13 C 0.407 3.593 14 O -0.521 6.521 15 N -0.366 5.366 16 C 0.022 3.978 17 C -0.075 4.075 18 N -0.246 5.246 19 C 0.032 3.968 20 C -0.589 4.589 21 H 0.045 0.955 22 C -0.189 4.189 23 N -0.591 5.591 24 Si 0.776 3.224 25 H -0.194 1.194 26 H -0.213 1.213 27 H -0.161 1.161 28 C -0.081 4.081 29 C 0.006 3.994 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.244 0.756 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.022 0.978 48 H 0.100 0.900 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.074 0.926 52 H 0.026 0.974 53 H 0.109 0.891 54 H 0.116 0.884 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.164 17.192 3.280 25.953 hybrid contribution 0.666 -1.244 1.162 1.828 sum -18.498 15.948 4.442 24.824 Atomic orbital electron populations 1.22453 0.85944 1.02930 1.01181 1.62169 1.08961 1.14013 1.41766 1.22386 0.99933 0.89165 1.01091 1.21951 0.92257 0.98938 0.89364 0.88648 1.22133 1.01923 0.99823 0.94403 1.21470 0.94091 1.01025 0.98249 1.21488 0.97161 1.00474 0.96067 1.21946 0.99687 0.99980 0.95318 1.20827 0.94371 0.95930 0.81823 0.91486 1.45023 1.16127 1.49885 1.26391 1.15975 0.82503 0.80933 0.79854 1.90828 1.55865 1.38690 1.66707 1.47376 1.15725 1.44574 1.28971 1.21592 0.81872 0.95470 0.98867 1.22330 0.96526 0.92919 0.95685 1.62443 1.04341 1.15589 1.42201 1.20111 0.95015 0.87328 0.94368 1.21906 1.42452 1.00746 0.93829 0.95495 1.25988 0.94239 0.97945 1.00738 1.70100 1.44854 1.13998 1.30116 0.85625 0.79962 0.77180 0.79613 1.19407 1.21264 1.16128 1.22327 0.91950 0.96906 0.96875 1.21837 0.91338 0.87424 0.98798 0.94466 0.91006 0.90696 0.93407 0.90983 0.94252 0.91784 0.89742 0.90368 0.91037 0.92356 0.91152 0.94645 0.91293 0.75645 0.89432 0.90454 0.97768 0.90039 0.94113 0.95052 0.92572 0.97389 0.89113 0.88418 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.31 127.69 1.19 1.44 16 2 N -0.55 -8.70 4.84 -923.27 -4.47 -13.17 16 3 C 0.02 0.38 8.82 127.69 1.13 1.50 16 4 C 0.08 1.34 1.75 44.91 0.08 1.42 16 5 H 0.10 1.41 8.13 -2.39 -0.02 1.39 16 6 C -0.14 -1.83 4.51 30.59 0.14 -1.69 16 7 C -0.11 -1.40 5.92 30.59 0.18 -1.22 16 8 C -0.11 -2.02 5.92 30.60 0.18 -1.84 16 9 C -0.13 -3.05 5.50 30.61 0.17 -2.88 16 10 C 0.18 4.02 1.63 45.01 0.07 4.09 16 11 H 0.07 1.86 5.79 -2.39 -0.01 1.84 16 12 N -0.72 -18.60 4.82 -457.76 -2.21 -20.81 16 13 C 0.71 23.81 8.27 179.06 1.48 25.29 16 14 O -0.64 -26.16 15.45 -3.98 -0.06 -26.23 16 15 N -0.63 -20.30 3.00 -835.05 -2.51 -22.81 16 16 C 0.15 4.90 6.61 86.50 0.57 5.47 16 17 C 0.05 2.18 5.17 86.53 0.45 2.62 16 18 N -0.52 -20.64 4.83 -898.87 -4.34 -24.98 16 19 C 0.16 7.29 4.21 85.56 0.36 7.65 16 20 C -0.55 -30.99 8.32 25.60 0.21 -30.78 16 21 H 0.03 1.73 6.12 -2.91 -0.02 1.72 16 22 C 0.01 0.50 5.47 84.65 0.46 0.96 16 23 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 24 Si 0.95 43.06 27.57 68.60 1.89 44.95 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.24 -9.73 6.40 99.48 0.64 -9.10 16 28 C 0.05 1.73 5.25 86.38 0.45 2.18 16 29 C 0.13 3.47 6.59 86.35 0.57 4.04 16 30 H 0.04 0.35 6.44 -2.39 -0.02 0.34 16 31 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 1.07 6.33 -2.39 -0.02 1.06 16 34 H 0.07 1.10 8.12 -2.38 -0.02 1.08 16 35 H 0.04 0.57 6.28 -2.39 -0.01 0.56 16 36 H 0.06 0.90 6.39 -2.39 -0.02 0.89 16 37 H 0.08 0.85 6.52 -2.38 -0.02 0.83 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.41 8.89 6.10 -92.71 -0.57 8.33 16 45 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 46 H 0.08 2.77 7.09 -2.39 -0.02 2.76 16 47 H 0.00 0.19 6.62 -2.39 -0.02 0.18 16 48 H 0.08 3.11 8.11 -2.39 -0.02 3.09 16 49 H 0.04 1.81 6.78 -2.39 -0.02 1.79 16 50 H 0.03 1.42 7.81 -2.39 -0.02 1.40 16 51 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 52 H 0.01 0.34 7.11 -2.39 -0.02 0.32 16 53 H 0.09 2.95 8.06 -2.39 -0.02 2.93 16 54 H 0.10 2.10 5.63 -2.39 -0.01 2.09 16 55 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -72.80 401.46 -3.46 -76.27 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.24 Total: 27.62 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 7.69 Total: 18.28 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -13.22 Total: -140.89 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.06 Total: -26.23 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.89 Total: 44.95 kcal Total: -72.80 -3.46 -76.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647335829.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.584 kcal (2) G-P(sol) polarization free energy of solvation -72.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds