Wall clock time and date at job start Tue Mar 31 2020 22:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 13 13 C 1.34709 * 116.99212 * 90.00210 * 12 2 1 14 14 O 1.21470 * 120.00751 * 0.02562 * 13 12 2 15 15 C 1.47763 * 119.99673 * 180.02562 * 13 12 2 16 16 C 1.39937 * 125.70116 * 179.97438 * 15 13 12 17 17 C 1.38582 * 107.58898 * 179.97438 * 16 15 13 18 18 N 1.34113 * 132.31556 * 180.02562 * 17 16 15 19 19 C 1.31127 * 120.86050 * 179.97438 * 18 17 16 20 20 C 1.40421 * 120.28549 * 359.97438 * 19 18 17 21 21 Br 1.89110 * 120.27430 * 180.02562 * 20 19 18 22 22 C 1.35518 * 119.44622 * 0.02562 * 20 19 18 23 23 N 1.36698 * 119.13432 * 359.97438 * 22 20 19 24 24 N 1.32426 * 125.69988 * 359.69635 * 15 13 12 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 29 29 H 1.08007 * 126.20456 * 359.92774 * 16 15 13 30 30 H 1.07999 * 119.85174 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.43229 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0666 -2.2850 14 8 1.9978 1.2608 -2.2541 15 6 2.7092 -0.5621 -3.5286 16 6 2.9607 0.1012 -4.7348 17 6 3.4069 -0.8424 -5.6465 18 7 3.7837 -0.7499 -6.9303 19 6 4.1753 -1.8105 -7.5944 20 6 4.2068 -3.0668 -6.9678 21 35 4.7722 -4.5961 -7.9257 22 6 3.8285 -3.1740 -5.6709 23 7 3.4244 -2.0533 -5.0007 24 7 2.9901 -1.8466 -3.6864 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7082 1.1609 3.4844 29 1 2.8300 1.1569 -4.9217 30 1 4.4749 -1.7174 -8.6279 31 1 3.8469 -4.1323 -5.1732 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650432716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:35 Heat of formation + Delta-G solvation = 43.245635 kcal Electronic energy + Delta-G solvation = -20081.067998 eV Core-core repulsion = 16604.815679 eV Total energy + Delta-G solvation = -3476.252319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.68285 -39.66866 -38.27190 -35.87093 -34.64379 -33.34187 -32.78159 -30.46023 -29.60204 -29.12935 -25.84959 -25.33488 -24.41302 -23.02046 -21.23666 -19.80620 -18.78845 -18.00810 -17.06851 -16.62768 -16.52119 -15.97547 -15.31334 -15.08768 -14.87547 -14.50422 -13.89101 -13.51462 -13.29803 -13.03890 -12.33156 -12.27205 -12.01426 -11.63023 -11.32322 -11.17593 -11.12669 -10.96363 -10.87174 -10.40798 -10.34973 -10.31916 -10.10522 -9.71361 -9.64033 -8.96121 -8.53303 -8.33118 -6.21645 -4.28434 -0.07425 0.24667 0.61914 1.59128 1.69132 2.84309 3.05140 3.22913 3.30099 3.35856 3.38503 3.47603 3.75358 3.81878 4.28993 4.38032 4.74592 4.87347 5.11262 5.13889 5.47916 5.57743 5.81394 6.05023 6.54684 6.82109 6.84271 6.89974 7.00216 7.08839 7.51199 7.65634 7.83285 8.06989 8.44795 8.81180 9.36787 10.85990 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.002407 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.303172 B =11630.828035 C =12548.269150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H 0.051 0.949 4 C -0.521 4.521 5 H 0.071 0.929 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.334 6.334 13 C 0.536 3.464 14 O -0.490 6.490 15 C 0.107 3.893 16 C -0.186 4.186 17 C 0.240 3.760 18 N -0.439 5.439 19 C 0.202 3.798 20 C -0.209 4.209 21 Br 0.007 6.993 22 C 0.211 3.789 23 N -0.312 5.312 24 N -0.233 5.233 25 H 0.018 0.982 26 H 0.102 0.898 27 H 0.039 0.961 28 H 0.266 0.734 29 H 0.181 0.819 30 H 0.189 0.811 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.751 -10.868 -24.282 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.559 4.559 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.248 6.248 13 C 0.376 3.624 14 O -0.377 6.377 15 C -0.053 4.053 16 C -0.216 4.216 17 C 0.016 3.984 18 N -0.149 5.149 19 C 0.014 3.986 20 C -0.296 4.296 21 Br 0.090 6.910 22 C 0.074 3.926 23 N -0.086 5.086 24 N -0.061 5.061 25 H 0.037 0.963 26 H 0.121 0.879 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.198 0.802 30 H 0.206 0.794 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.640 -11.035 -23.872 27.386 hybrid contribution 0.119 -0.113 0.976 0.990 sum 7.759 -11.149 -22.896 26.622 Atomic orbital electron populations 1.22190 0.97163 1.00406 1.01651 1.20840 0.91678 0.94067 0.77217 0.93125 1.21050 1.32591 1.13604 0.88626 0.91066 1.24885 0.94889 0.95101 0.99067 1.69900 1.35999 1.22548 1.24196 0.86191 0.78647 0.79500 0.81646 1.19435 1.20703 1.20672 1.86657 1.74903 1.42725 1.20564 1.19409 0.75387 0.84614 0.83017 1.90843 1.47829 1.15144 1.83859 1.21510 0.98524 0.90868 0.94369 1.21068 1.10543 1.00761 0.89248 1.20517 1.01987 0.85719 0.90138 1.68319 1.12700 1.30151 1.03724 1.23408 0.89944 0.85053 1.00238 1.22266 1.14582 0.96981 0.95739 1.96843 1.88876 1.32875 1.72445 1.21988 0.89089 0.91338 0.90208 1.47394 1.42980 1.07349 1.10839 1.78593 1.21291 1.16783 0.89481 0.96311 0.87947 0.94208 0.92359 0.80207 0.79442 0.79195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.33 37.16 0.35 -3.61 16 2 C 0.21 5.76 2.56 -27.88 -0.07 5.69 16 3 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 4 C -0.52 -14.66 8.90 -34.44 -0.31 -14.97 16 5 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 O -0.33 -8.21 9.87 -40.52 -0.40 -8.61 16 13 C 0.54 11.78 7.95 34.62 0.28 12.06 16 14 O -0.49 -11.51 16.14 -19.24 -0.31 -11.82 16 15 C 0.11 1.96 7.07 -83.08 -0.59 1.37 16 16 C -0.19 -2.90 10.65 -38.82 -0.41 -3.32 16 17 C 0.24 3.35 7.90 -155.42 -1.23 2.12 16 18 N -0.44 -5.06 10.48 -12.20 -0.13 -5.19 16 19 C 0.20 1.60 11.05 -17.03 -0.19 1.41 16 20 C -0.21 -1.58 6.21 -39.73 -0.25 -1.83 16 21 Br 0.01 0.04 33.72 -68.01 -2.29 -2.26 16 22 C 0.21 1.99 11.03 -16.35 -0.18 1.81 16 23 N -0.31 -4.28 3.90 -12.18 -0.05 -4.32 16 24 N -0.23 -4.03 12.70 33.22 0.42 -3.61 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.18 2.53 8.06 -52.48 -0.42 2.10 16 30 H 0.19 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.19 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -31.67 306.74 -7.57 -39.24 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -2.35 Total: -2.03 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.69 Total: 2.36 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.87 Total: -37.56 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.71 Total: -20.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -2.29 Total: -2.26 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.67 -7.57 -39.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650432716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.487 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds