Wall clock time and date at job start Tue Mar 31 2020 22:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 13 13 C 1.34709 * 116.99212 * 90.00210 * 12 2 1 14 14 O 1.21470 * 120.00751 * 0.02562 * 13 12 2 15 15 C 1.47763 * 119.99673 * 180.02562 * 13 12 2 16 16 C 1.39937 * 125.70116 * 179.97438 * 15 13 12 17 17 C 1.38582 * 107.58898 * 179.97438 * 16 15 13 18 18 N 1.34113 * 132.31556 * 180.02562 * 17 16 15 19 19 C 1.31127 * 120.86050 * 179.97438 * 18 17 16 20 20 C 1.40421 * 120.28549 * 359.97438 * 19 18 17 21 21 Br 1.89110 * 120.27430 * 180.02562 * 20 19 18 22 22 C 1.35518 * 119.44622 * 0.02562 * 20 19 18 23 23 N 1.36698 * 119.13432 * 359.97438 * 22 20 19 24 24 N 1.32426 * 125.69988 * 359.69635 * 15 13 12 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 29 29 H 1.08007 * 126.20456 * 359.92774 * 16 15 13 30 30 H 1.07999 * 119.85174 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.43229 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 8 2.0140 -0.6846 -1.1855 13 6 2.2179 0.0666 -2.2850 14 8 1.9978 1.2608 -2.2541 15 6 2.7092 -0.5621 -3.5286 16 6 2.9607 0.1012 -4.7348 17 6 3.4069 -0.8424 -5.6465 18 7 3.7837 -0.7499 -6.9303 19 6 4.1753 -1.8105 -7.5944 20 6 4.2068 -3.0668 -6.9678 21 35 4.7722 -4.5961 -7.9257 22 6 3.8285 -3.1740 -5.6709 23 7 3.4244 -2.0533 -5.0007 24 7 2.9901 -1.8466 -3.6864 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7082 1.1609 3.4844 29 1 2.8300 1.1569 -4.9217 30 1 4.4749 -1.7174 -8.6279 31 1 3.8469 -4.1323 -5.1732 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650432716.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:35 Heat of formation + Delta-G solvation = 24.135356 kcal Electronic energy + Delta-G solvation = -20081.896682 eV Core-core repulsion = 16604.815679 eV Total energy + Delta-G solvation = -3477.081003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 339.001 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.72856 -41.39388 -39.35813 -37.74606 -35.56126 -35.39558 -33.70907 -31.85514 -31.18345 -30.13194 -27.51373 -26.96634 -25.53293 -24.18737 -22.97119 -21.41448 -19.87301 -19.32626 -18.76649 -17.90054 -17.67394 -17.63300 -16.81555 -16.75018 -16.37225 -15.65291 -15.04646 -14.79261 -14.47129 -14.28106 -14.15638 -13.94164 -13.28740 -13.11143 -13.06341 -12.84801 -12.73304 -12.42999 -12.19061 -11.95708 -11.92708 -11.79832 -11.68846 -11.15740 -11.05188 -10.63810 -10.59642 -9.36995 -8.31398 -6.48273 -0.99566 -0.66714 -0.11953 0.26909 0.71432 1.40749 1.42357 1.53788 1.64737 1.74043 2.01225 2.35776 2.52576 2.69676 2.99436 3.09440 3.45094 3.72558 3.86081 4.04151 4.21919 4.46938 4.66148 4.74883 4.75854 4.82353 4.88909 5.03096 5.41706 5.55225 5.70468 5.81530 5.96576 6.20420 6.50991 6.73398 7.22232 8.76825 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.023838 B = 0.002407 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.303172 B =11630.828035 C =12548.269150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.215 3.785 3 H 0.018 0.982 4 C -0.550 4.550 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.985 3.015 9 H -0.266 1.266 10 H -0.274 1.274 11 H -0.269 1.269 12 O -0.345 6.345 13 C 0.537 3.463 14 O -0.515 6.515 15 C 0.084 3.916 16 C -0.203 4.203 17 C 0.251 3.749 18 N -0.459 5.459 19 C 0.222 3.778 20 C -0.188 4.188 21 Br 0.041 6.959 22 C 0.192 3.808 23 N -0.307 5.307 24 N -0.263 5.263 25 H 0.027 0.973 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.273 0.727 29 H 0.185 0.815 30 H 0.234 0.766 31 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.042 -13.088 -26.406 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.035 0.965 4 C -0.587 4.587 5 H 0.084 0.916 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.808 3.192 9 H -0.190 1.190 10 H -0.199 1.199 11 H -0.195 1.195 12 O -0.260 6.260 13 C 0.378 3.622 14 O -0.403 6.403 15 C -0.073 4.073 16 C -0.234 4.234 17 C 0.025 3.975 18 N -0.170 5.170 19 C 0.036 3.964 20 C -0.273 4.273 21 Br 0.124 6.876 22 C 0.057 3.943 23 N -0.081 5.081 24 N -0.094 5.094 25 H 0.046 0.954 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.202 0.798 30 H 0.250 0.750 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 8.937 -13.280 -26.032 30.560 hybrid contribution -0.144 0.404 1.255 1.326 sum 8.793 -12.876 -24.777 29.275 Atomic orbital electron populations 1.22018 0.96235 1.00624 1.01284 1.20594 0.92424 0.92447 0.78268 0.96457 1.21280 1.33671 1.14011 0.89785 0.91632 1.25816 0.94634 0.95670 1.02008 1.70005 1.36328 1.23496 1.25357 0.85107 0.78399 0.78370 0.77351 1.18971 1.19899 1.19455 1.86635 1.75476 1.42941 1.20906 1.19912 0.74485 0.84449 0.83320 1.90803 1.48957 1.16122 1.84375 1.20901 1.01105 0.91937 0.93368 1.21078 1.11967 1.01455 0.88873 1.20559 1.00730 0.85298 0.90875 1.68464 1.14500 1.31613 1.02443 1.24289 0.86476 0.84117 1.01513 1.22561 1.11658 0.98175 0.94955 1.96932 1.88296 1.31072 1.71262 1.22654 0.89455 0.91246 0.90986 1.47463 1.42338 1.08558 1.09770 1.78435 1.23069 1.16134 0.91725 0.95376 0.89477 0.93552 0.91787 0.79752 0.74992 0.76779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.56 9.33 71.98 0.67 -6.89 16 2 C 0.22 12.18 2.56 29.85 0.08 12.26 16 3 H 0.02 1.09 7.16 -2.39 -0.02 1.07 16 4 C -0.55 -31.97 8.90 25.60 0.23 -31.74 16 5 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -52.54 11.32 21.45 0.24 -52.29 16 8 Si 0.98 43.31 29.54 68.60 2.03 45.34 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 O -0.34 -17.90 9.87 -56.19 -0.55 -18.45 16 13 C 0.54 25.08 7.95 70.34 0.56 25.64 16 14 O -0.51 -25.76 16.14 19.93 0.32 -25.44 16 15 C 0.08 3.23 7.07 41.99 0.30 3.53 16 16 C -0.20 -6.55 10.65 22.76 0.24 -6.30 16 17 C 0.25 6.83 7.90 133.00 1.05 7.88 16 18 N -0.46 -9.50 10.48 -192.53 -2.02 -11.52 16 19 C 0.22 2.62 11.05 85.33 0.94 3.56 16 20 C -0.19 -2.15 6.21 22.17 0.14 -2.01 16 21 Br 0.04 0.29 33.72 -20.37 -0.69 -0.39 16 22 C 0.19 3.16 11.03 83.31 0.92 4.08 16 23 N -0.31 -8.18 3.90 -192.44 -0.75 -8.93 16 24 N -0.26 -9.34 12.70 -48.82 -0.62 -9.96 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 4.84 6.07 -2.39 -0.01 4.82 16 27 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.19 5.46 8.06 -2.91 -0.02 5.44 16 30 H 0.23 0.60 8.06 -2.91 -0.02 0.58 16 31 H 0.22 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -71.75 306.74 4.72 -67.03 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.19 Total: 3.13 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 5.57 Total: 11.49 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -3.15 Total: -82.70 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.23 Total: -43.90 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 35 Polarization: 0.29 SS G_CDS: -0.69 Total: -0.39 kcal Total: -71.75 4.72 -67.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650432716.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.167 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds