Wall clock time and date at job start Tue Mar 31 2020 22:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86797 * 120.00325 * 2 1 4 4 H 1.48501 * 109.46995 * 269.99884 * 3 2 1 5 5 H 1.48503 * 109.47056 * 29.99650 * 3 2 1 6 6 H 1.48493 * 109.47151 * 149.99410 * 3 2 1 7 7 C 1.40310 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99794 * 162.43365 * 7 2 1 9 9 C 1.40536 * 120.00374 * 342.42552 * 7 2 1 10 10 C 1.44188 * 123.71581 * 337.21191 * 9 7 2 11 11 C 1.32763 * 114.43418 * 179.72427 * 10 9 7 12 12 S 1.75469 * 111.36179 * 0.02562 * 11 10 9 13 13 C 1.39544 * 123.71528 * 156.90348 * 9 7 2 14 14 C 1.46239 * 125.22959 * 0.25736 * 13 9 7 15 15 O 1.21758 * 119.99545 * 33.45983 * 14 13 9 16 16 N 1.34771 * 119.99903 * 213.46375 * 14 13 9 17 17 C 1.47150 * 120.98564 * 2.50873 * 16 14 13 18 18 C 1.53710 * 108.16329 * 129.43243 * 17 16 14 19 19 F 1.39898 * 109.65677 * 292.57070 * 18 17 16 20 20 F 1.39902 * 109.48751 * 172.40063 * 18 17 16 21 21 O 1.42958 * 109.14875 * 52.53989 * 18 17 16 22 22 C 1.42971 * 114.16584 * 297.28885 * 21 18 17 23 23 F 1.39899 * 109.50837 * 302.65505 * 22 21 18 24 24 F 1.39898 * 109.51168 * 182.50481 * 22 21 18 25 25 C 1.47158 * 120.98042 * 182.79038 * 16 14 13 26 26 H 0.96993 * 119.99601 * 0.02562 * 1 2 3 27 27 H 1.07999 * 122.78161 * 359.70889 * 10 9 7 28 28 H 1.08002 * 124.31947 * 180.02562 * 11 10 9 29 29 H 1.09001 * 109.68497 * 249.21126 * 17 16 14 30 30 H 1.09000 * 109.68093 * 9.76104 * 17 16 14 31 31 H 1.08996 * 109.68076 * 350.23448 * 25 16 14 32 32 H 1.08999 * 109.67824 * 110.78647 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5379 1.4401 0.7001 7 6 2.0079 -1.2152 0.0005 8 1 3.0501 -1.2372 -0.2817 9 6 1.3544 -2.4037 0.3686 10 6 0.1685 -2.4443 1.1877 11 6 -0.2988 -3.6656 1.4172 12 16 0.6916 -4.8860 0.6370 13 6 1.7782 -3.6740 -0.0236 14 6 2.9474 -3.9535 -0.8564 15 8 3.9344 -3.2450 -0.7774 16 7 2.9322 -4.9953 -1.7113 17 6 1.7318 -5.8324 -1.8642 18 6 1.4140 -5.9452 -3.3639 19 9 1.0157 -4.6975 -3.8556 20 9 0.3843 -6.8728 -3.5543 21 8 2.5842 -6.3813 -4.0597 22 6 3.6856 -5.4732 -3.9790 23 9 3.2979 -4.2234 -4.4736 24 9 4.7537 -5.9658 -4.7364 25 6 4.1178 -5.3330 -2.5150 26 1 -0.4849 0.8400 -0.0004 27 1 -0.3006 -1.5551 1.5820 28 1 -1.1766 -3.8806 2.0086 29 1 1.9199 -6.8232 -1.4505 30 1 0.8931 -5.3700 -1.3437 31 1 4.8599 -4.5396 -2.4257 32 1 4.5422 -6.2742 -2.1656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650596707.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:54 Heat of formation + Delta-G solvation = -249.428783 kcal Electronic energy + Delta-G solvation = -28585.541496 eV Core-core repulsion = 23751.292552 eV Total energy + Delta-G solvation = -4834.248944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.034 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.25180 -48.99514 -47.47011 -47.10103 -39.50995 -37.90734 -36.25616 -34.75897 -33.28821 -30.80758 -29.14415 -27.91244 -26.11395 -24.49555 -22.71449 -21.74249 -20.15055 -19.15682 -18.95238 -18.68356 -17.66728 -17.33169 -17.15600 -16.66610 -16.28407 -15.96443 -15.44961 -15.05886 -14.51543 -14.25318 -14.07094 -13.92613 -13.88988 -13.83402 -13.72757 -13.64647 -13.16729 -12.72664 -12.69821 -12.66185 -12.51901 -12.25442 -12.11702 -12.06812 -11.56940 -11.32458 -11.16993 -10.98058 -10.52435 -10.27601 -9.86249 -9.40443 -8.96124 -8.63206 -7.71794 -7.31742 -7.27334 -4.75102 1.84328 1.97742 2.81741 2.83679 2.88512 2.89990 2.97593 3.13683 3.24481 3.52524 3.65816 3.68407 4.04993 4.08828 4.11313 4.49954 4.80680 4.90335 4.99297 5.25439 5.39706 5.58205 5.76149 5.88576 6.04901 6.53007 6.66552 6.88755 6.99851 7.23384 7.43906 7.78484 8.12462 8.35001 8.48041 9.01966 9.64046 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.005165 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.565026 B = 5419.678918 C = 6390.355732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.382 4.382 8 H 0.110 0.890 9 C 0.149 3.851 10 C -0.093 4.093 11 C -0.209 4.209 12 S -0.033 6.033 13 C -0.453 4.453 14 C 0.625 3.375 15 O -0.544 6.544 16 N -0.627 5.627 17 C 0.054 3.946 18 C 0.447 3.553 19 F -0.175 7.175 20 F -0.156 7.156 21 O -0.416 6.416 22 C 0.446 3.554 23 F -0.178 7.178 24 F -0.158 7.158 25 C 0.071 3.929 26 H 0.292 0.708 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.107 0.893 30 H 0.158 0.842 31 H 0.136 0.864 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -7.302 -2.261 7.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.154 4.154 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.412 4.412 8 H 0.128 0.872 9 C 0.138 3.862 10 C -0.124 4.124 11 C -0.342 4.342 12 S 0.222 5.778 13 C -0.571 4.571 14 C 0.424 3.576 15 O -0.424 6.424 16 N -0.364 5.364 17 C -0.073 4.073 18 C 0.373 3.627 19 F -0.157 7.157 20 F -0.137 7.137 21 O -0.343 6.343 22 C 0.372 3.628 23 F -0.159 7.159 24 F -0.139 7.139 25 C -0.054 4.054 26 H 0.104 0.896 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.125 0.875 30 H 0.174 0.826 31 H 0.154 0.846 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.217 -8.372 -2.362 8.783 hybrid contribution -0.072 2.140 -0.465 2.191 sum 1.145 -6.232 -2.827 6.938 Atomic orbital electron populations 1.69704 1.08214 1.31018 1.29436 1.26392 0.94905 1.02763 0.91339 0.86048 0.80861 0.78615 0.80077 1.18704 1.19598 1.17556 1.19981 0.99471 0.89673 1.32092 0.87201 1.17797 0.89208 0.91310 0.87890 1.21570 0.96361 0.96513 0.98006 1.25069 1.04431 0.96852 1.07832 1.82745 1.25783 1.12803 1.56471 1.22145 1.11087 0.95574 1.28330 1.16919 0.86638 0.76625 0.77435 1.90679 1.34341 1.47671 1.69715 1.47967 1.11059 1.33090 1.44247 1.23648 0.93811 0.99744 0.90121 1.21918 0.76385 0.72867 0.91570 1.93213 1.90915 1.42153 1.89378 1.93117 1.57411 1.66951 1.96215 1.88048 1.22723 1.46332 1.77241 1.21779 0.77428 0.73498 0.90133 1.93210 1.90919 1.42217 1.89561 1.93115 1.53632 1.88385 1.78769 1.22688 0.91670 1.06284 0.84748 0.89647 0.84286 0.84185 0.87534 0.82570 0.84641 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.30 11.17 55.57 0.62 -16.68 16 2 C 0.07 1.61 5.29 -17.28 -0.09 1.52 16 3 Si 0.92 17.38 29.60 -169.99 -5.03 12.34 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.25 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.38 -9.66 8.74 -37.94 -0.33 -9.99 16 8 H 0.11 2.91 6.27 -52.49 -0.33 2.58 16 9 C 0.15 3.69 5.65 -106.21 -0.60 3.09 16 10 C -0.09 -2.09 9.03 -39.12 -0.35 -2.44 16 11 C -0.21 -4.14 11.07 28.86 0.32 -3.82 16 12 S -0.03 -0.64 19.47 -107.50 -2.09 -2.73 16 13 C -0.45 -10.59 5.78 -35.88 -0.21 -10.79 16 14 C 0.62 14.17 7.42 -13.05 -0.10 14.07 16 15 O -0.54 -13.60 14.62 5.14 0.08 -13.52 16 16 N -0.63 -11.56 3.00 -173.72 -0.52 -12.08 16 17 C 0.05 0.88 5.25 -3.32 -0.02 0.86 16 18 C 0.45 7.44 2.69 37.53 0.10 7.55 16 19 F -0.18 -3.38 15.36 2.25 0.03 -3.35 16 20 F -0.16 -2.40 17.29 2.25 0.04 -2.36 16 21 O -0.42 -6.78 10.58 -35.23 -0.37 -7.15 16 22 C 0.45 7.12 2.69 37.31 0.10 7.22 16 23 F -0.18 -3.30 15.35 2.25 0.03 -3.26 16 24 F -0.16 -2.29 17.29 2.25 0.04 -2.25 16 25 C 0.07 1.09 6.12 -3.53 -0.02 1.07 16 26 H 0.29 5.92 8.29 -40.82 -0.34 5.58 16 27 H 0.14 3.09 6.67 -52.49 -0.35 2.74 16 28 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.16 2.80 4.07 -26.84 -0.11 2.69 16 31 H 0.14 2.14 7.07 -51.93 -0.37 1.77 16 32 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -27.13 301.48 -5.39 -32.52 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -1.56 Total: 5.65 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.20 Total: 8.33 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 0.10 Total: -28.76 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.30 Total: -20.67 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 0.15 Total: -11.22 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.34 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -2.09 Total: -2.73 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.13 -5.39 -32.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650596707.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.910 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds