Wall clock time and date at job start Tue Mar 31 2020 22:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86797 * 120.00325 * 2 1 4 4 H 1.48501 * 109.46995 * 269.99884 * 3 2 1 5 5 H 1.48503 * 109.47056 * 29.99650 * 3 2 1 6 6 H 1.48493 * 109.47151 * 149.99410 * 3 2 1 7 7 C 1.40310 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99794 * 162.43365 * 7 2 1 9 9 C 1.40536 * 120.00374 * 342.42552 * 7 2 1 10 10 C 1.44188 * 123.71581 * 337.21191 * 9 7 2 11 11 C 1.32763 * 114.43418 * 179.72427 * 10 9 7 12 12 S 1.75469 * 111.36179 * 0.02562 * 11 10 9 13 13 C 1.39544 * 123.71528 * 156.90348 * 9 7 2 14 14 C 1.46239 * 125.22959 * 0.25736 * 13 9 7 15 15 O 1.21758 * 119.99545 * 33.45983 * 14 13 9 16 16 N 1.34771 * 119.99903 * 213.46375 * 14 13 9 17 17 C 1.47150 * 120.98564 * 2.50873 * 16 14 13 18 18 C 1.53710 * 108.16329 * 129.43243 * 17 16 14 19 19 F 1.39898 * 109.65677 * 292.57070 * 18 17 16 20 20 F 1.39902 * 109.48751 * 172.40063 * 18 17 16 21 21 O 1.42958 * 109.14875 * 52.53989 * 18 17 16 22 22 C 1.42971 * 114.16584 * 297.28885 * 21 18 17 23 23 F 1.39899 * 109.50837 * 302.65505 * 22 21 18 24 24 F 1.39898 * 109.51168 * 182.50481 * 22 21 18 25 25 C 1.47158 * 120.98042 * 182.79038 * 16 14 13 26 26 H 0.96993 * 119.99601 * 0.02562 * 1 2 3 27 27 H 1.07999 * 122.78161 * 359.70889 * 10 9 7 28 28 H 1.08002 * 124.31947 * 180.02562 * 11 10 9 29 29 H 1.09001 * 109.68497 * 249.21126 * 17 16 14 30 30 H 1.09000 * 109.68093 * 9.76104 * 17 16 14 31 31 H 1.08996 * 109.68076 * 350.23448 * 25 16 14 32 32 H 1.08999 * 109.67824 * 110.78647 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5379 1.4401 0.7001 7 6 2.0079 -1.2152 0.0005 8 1 3.0501 -1.2372 -0.2817 9 6 1.3544 -2.4037 0.3686 10 6 0.1685 -2.4443 1.1877 11 6 -0.2988 -3.6656 1.4172 12 16 0.6916 -4.8860 0.6370 13 6 1.7782 -3.6740 -0.0236 14 6 2.9474 -3.9535 -0.8564 15 8 3.9344 -3.2450 -0.7774 16 7 2.9322 -4.9953 -1.7113 17 6 1.7318 -5.8324 -1.8642 18 6 1.4140 -5.9452 -3.3639 19 9 1.0157 -4.6975 -3.8556 20 9 0.3843 -6.8728 -3.5543 21 8 2.5842 -6.3813 -4.0597 22 6 3.6856 -5.4732 -3.9790 23 9 3.2979 -4.2234 -4.4736 24 9 4.7537 -5.9658 -4.7364 25 6 4.1178 -5.3330 -2.5150 26 1 -0.4849 0.8400 -0.0004 27 1 -0.3006 -1.5551 1.5820 28 1 -1.1766 -3.8806 2.0086 29 1 1.9199 -6.8232 -1.4505 30 1 0.8931 -5.3700 -1.3437 31 1 4.8599 -4.5396 -2.4257 32 1 4.5422 -6.2742 -2.1656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650596707.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:54 Heat of formation + Delta-G solvation = -266.018242 kcal Electronic energy + Delta-G solvation = -28586.260869 eV Core-core repulsion = 23751.292552 eV Total energy + Delta-G solvation = -4834.968317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.034 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.58780 -50.31680 -48.79463 -48.46881 -41.02819 -39.41057 -37.92435 -36.32526 -34.98879 -32.16375 -30.79210 -29.45183 -27.73046 -25.85045 -24.29844 -23.22344 -21.69033 -20.67027 -20.45732 -20.08531 -19.13966 -18.68415 -18.58684 -18.04562 -17.69302 -17.61821 -17.05345 -16.63595 -15.97384 -15.68882 -15.51597 -15.41160 -15.25875 -15.22293 -15.05830 -14.93829 -14.57779 -14.30307 -14.10351 -14.05177 -14.02850 -13.88625 -13.80051 -13.38891 -13.14693 -12.85793 -12.78460 -12.50185 -12.08399 -11.94311 -11.49341 -11.06699 -10.72133 -10.13079 -9.43134 -8.95272 -8.92504 -6.51685 0.28232 0.52792 1.27488 1.29530 1.34201 1.40235 1.47213 1.56800 1.84321 1.94984 2.11584 2.18260 2.44147 2.74792 2.81568 3.12474 3.22566 3.50732 3.66267 3.92547 4.18583 4.26231 4.33623 4.44179 4.62469 4.93047 5.10756 5.17783 5.33480 5.53129 5.73262 6.09567 6.33055 6.56449 6.71838 7.30545 7.99501 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.005165 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.565026 B = 5419.678918 C = 6390.355732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.042 3.958 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.248 1.248 6 H -0.262 1.262 7 C -0.426 4.426 8 H 0.083 0.917 9 C 0.122 3.878 10 C -0.125 4.125 11 C -0.196 4.196 12 S 0.036 5.964 13 C -0.484 4.484 14 C 0.619 3.381 15 O -0.579 6.579 16 N -0.626 5.626 17 C 0.054 3.946 18 C 0.447 3.553 19 F -0.195 7.195 20 F -0.146 7.146 21 O -0.412 6.412 22 C 0.446 3.554 23 F -0.197 7.197 24 F -0.146 7.146 25 C 0.071 3.929 26 H 0.303 0.697 27 H 0.134 0.866 28 H 0.178 0.822 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.128 0.872 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 -8.999 -1.978 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.181 4.181 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.171 1.171 6 H -0.186 1.186 7 C -0.456 4.456 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.157 4.157 11 C -0.329 4.329 12 S 0.292 5.708 13 C -0.602 4.602 14 C 0.418 3.582 15 O -0.462 6.462 16 N -0.361 5.361 17 C -0.072 4.072 18 C 0.373 3.627 19 F -0.177 7.177 20 F -0.126 7.126 21 O -0.339 6.339 22 C 0.372 3.628 23 F -0.179 7.179 24 F -0.127 7.127 25 C -0.053 4.053 26 H 0.115 0.885 27 H 0.151 0.849 28 H 0.195 0.805 29 H 0.166 0.834 30 H 0.160 0.840 31 H 0.146 0.854 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.667 -10.127 -2.102 10.364 hybrid contribution 0.082 2.442 -0.610 2.519 sum 0.749 -7.684 -2.711 8.183 Atomic orbital electron populations 1.69679 1.08869 1.32348 1.29490 1.26976 0.95638 1.04764 0.90683 0.85197 0.79416 0.75463 0.79845 1.18898 1.17125 1.18627 1.19945 0.98789 0.91655 1.35239 0.89894 1.18232 0.90425 0.91922 0.88293 1.21450 0.96945 0.97573 0.99753 1.25587 1.04785 0.96244 1.06327 1.82320 1.23500 1.10212 1.54733 1.22674 1.11988 0.97038 1.28500 1.17001 0.86082 0.77139 0.77981 1.90649 1.35590 1.49083 1.70857 1.47779 1.12689 1.32228 1.43447 1.23787 0.92472 1.01071 0.89869 1.21950 0.76670 0.72387 0.91671 1.93184 1.91157 1.43658 1.89695 1.93140 1.56952 1.66373 1.96170 1.88054 1.22576 1.45997 1.77225 1.21862 0.77562 0.72865 0.90481 1.93181 1.91178 1.43640 1.89876 1.93141 1.52941 1.88115 1.78518 1.22957 0.90270 1.08159 0.83865 0.88507 0.84870 0.80490 0.83365 0.83990 0.85425 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.16 11.17 21.89 0.24 -35.92 16 2 C 0.04 1.96 5.29 85.37 0.45 2.41 16 3 Si 0.98 36.49 29.60 68.60 2.03 38.52 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.25 -8.19 7.11 99.48 0.71 -7.49 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.43 -22.63 8.74 23.33 0.20 -22.43 16 8 H 0.08 4.72 6.27 -2.91 -0.02 4.70 16 9 C 0.12 6.23 5.65 -20.89 -0.12 6.11 16 10 C -0.13 -5.67 9.03 22.61 0.20 -5.46 16 11 C -0.20 -7.39 11.07 66.64 0.74 -6.66 16 12 S 0.04 1.31 19.47 -56.49 -1.10 0.21 16 13 C -0.48 -22.71 5.78 24.67 0.14 -22.56 16 14 C 0.62 28.33 7.42 86.32 0.64 28.97 16 15 O -0.58 -29.94 14.62 -4.54 -0.07 -30.01 16 16 N -0.63 -22.29 3.00 -821.72 -2.47 -24.76 16 17 C 0.05 1.63 5.25 86.49 0.45 2.08 16 18 C 0.45 14.01 2.69 72.22 0.19 14.21 16 19 F -0.20 -7.45 15.36 44.97 0.69 -6.76 16 20 F -0.15 -4.10 17.29 44.97 0.78 -3.33 16 21 O -0.41 -12.42 10.58 -148.98 -1.58 -14.00 16 22 C 0.45 13.53 2.69 72.08 0.19 13.72 16 23 F -0.20 -7.29 15.35 44.97 0.69 -6.60 16 24 F -0.15 -3.94 17.29 44.97 0.78 -3.16 16 25 C 0.07 2.06 6.12 86.35 0.53 2.59 16 26 H 0.30 12.33 8.29 -92.71 -0.77 11.56 16 27 H 0.13 6.04 6.67 -2.91 -0.02 6.02 16 28 H 0.18 5.24 8.06 -2.91 -0.02 5.22 16 29 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.14 4.78 4.07 -18.34 -0.07 4.70 16 31 H 0.13 3.96 7.07 -2.39 -0.02 3.94 16 32 H 0.15 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -61.11 301.48 4.79 -56.32 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.16 Total: 16.49 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 3.63 Total: 12.99 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -2.22 Total: -60.68 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.64 Total: -44.01 kcal Atomic # 9 Polarization: -22.78 SS G_CDS: 2.94 Total: -19.85 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.10 Total: 0.21 kcal Total: -61.11 4.79 -56.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650596707.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.699 kcal (2) G-P(sol) polarization free energy of solvation -61.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -270.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds