Wall clock time and date at job start Tue Mar 31 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46896 * 109.47278 * 2 1 4 4 C 1.46901 * 111.00163 * 66.04913 * 3 2 1 5 5 C 1.46902 * 111.00144 * 190.00248 * 3 2 1 6 6 C 1.53000 * 109.47343 * 169.99987 * 5 3 2 7 7 C 1.50704 * 109.46984 * 179.97438 * 6 5 3 8 8 O 1.21275 * 119.99978 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99652 * 179.97438 * 7 6 5 10 10 C 1.47019 * 125.64918 * 359.97438 * 9 7 6 11 11 C 1.54327 * 107.26948 * 178.98843 * 10 9 7 12 12 C 1.55154 * 102.94292 * 337.80484 * 11 10 9 13 13 H 1.09004 * 111.00623 * 277.42866 * 12 11 10 14 14 N 1.46896 * 111.00478 * 153.61989 * 12 11 10 15 15 C 1.46903 * 110.99820 * 188.88647 * 14 12 11 16 16 C 1.53241 * 109.33925 * 172.74256 * 15 14 12 17 17 N 1.47086 * 108.52213 * 53.82859 * 16 15 14 18 18 C 1.36932 * 120.88428 * 128.79286 * 17 16 15 19 19 H 1.08000 * 120.00510 * 206.60405 * 18 17 16 20 20 C 1.38816 * 120.00011 * 26.60098 * 18 17 16 21 21 N 1.31627 * 119.99670 * 17.00340 * 20 18 17 22 22 Si 1.86800 * 120.00254 * 197.00051 * 20 18 17 23 23 H 1.48496 * 109.46810 * 60.00227 * 22 20 18 24 24 H 1.48501 * 109.47090 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46923 * 300.00275 * 22 20 18 26 26 C 1.47082 * 118.23544 * 308.81582 * 17 16 15 27 27 C 1.46900 * 111.00398 * 64.58053 * 14 12 11 28 28 C 1.47424 * 125.64570 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47023 * 59.99371 * 1 2 3 30 30 H 1.08999 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46884 * 299.99852 * 1 2 3 32 32 H 1.09004 * 109.47236 * 239.99913 * 2 1 3 33 33 H 1.08999 * 109.47355 * 120.00203 * 2 1 3 34 34 H 1.08992 * 109.47041 * 183.95328 * 4 3 2 35 35 H 1.09001 * 109.46708 * 303.95051 * 4 3 2 36 36 H 1.09000 * 109.46843 * 63.94853 * 4 3 2 37 37 H 1.09005 * 109.47302 * 49.99921 * 5 3 2 38 38 H 1.09006 * 109.46822 * 290.00238 * 5 3 2 39 39 H 1.09000 * 109.46934 * 60.00193 * 6 5 3 40 40 H 1.08992 * 109.46802 * 299.99784 * 6 5 3 41 41 H 1.08998 * 109.88815 * 59.57039 * 10 9 7 42 42 H 1.08996 * 110.01356 * 298.47219 * 10 9 7 43 43 H 1.09005 * 110.72052 * 219.44326 * 11 10 9 44 44 H 1.09001 * 110.72469 * 96.17331 * 11 10 9 45 45 H 1.08999 * 109.49225 * 292.69832 * 15 14 12 46 46 H 1.08996 * 109.49593 * 52.78635 * 15 14 12 47 47 H 1.09003 * 109.63283 * 294.12324 * 16 15 14 48 48 H 1.08996 * 109.63243 * 173.53900 * 16 15 14 49 49 H 0.97000 * 119.99524 * 179.97438 * 21 20 18 50 50 H 1.09007 * 109.62831 * 291.47455 * 26 17 16 51 51 H 1.08998 * 109.62599 * 170.89211 * 26 17 16 52 52 H 1.08999 * 109.48954 * 307.21267 * 27 14 12 53 53 H 1.08995 * 109.49063 * 67.26982 * 27 14 12 54 54 H 1.09003 * 110.36545 * 85.24794 * 28 9 7 55 55 H 1.09002 * 110.36995 * 322.92144 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 3.4685 1.4311 -0.2382 6 6 3.9000 2.8791 -0.4792 7 6 5.3864 2.9264 -0.7229 8 8 6.0365 1.9028 -0.7060 9 7 5.9930 4.1062 -0.9606 10 6 5.3284 5.4166 -1.0108 11 6 6.4192 6.4734 -1.2847 12 6 7.7160 5.7650 -0.8115 13 1 7.8401 5.8571 0.2675 14 7 8.8910 6.2891 -1.5203 15 6 10.0837 5.4817 -1.2312 16 6 11.2395 5.9462 -2.1237 17 7 11.4124 7.3962 -1.9475 18 6 12.6413 7.9279 -1.6613 19 1 12.7138 8.8635 -1.1267 20 6 13.7942 7.2643 -2.0581 21 7 13.7295 6.3256 -2.9786 22 14 15.4375 7.7034 -1.2859 23 1 15.3745 7.4684 0.1790 24 1 16.5046 6.8573 -1.8781 25 1 15.7397 9.1340 -1.5452 26 6 10.2300 8.2598 -2.0865 27 6 9.1139 7.7043 -1.1955 28 6 7.4328 4.2962 -1.2144 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.9825 3.1097 1.1988 35 1 0.5920 2.0179 1.4052 36 1 2.1770 1.5789 2.0859 37 1 3.7122 0.8289 -1.1135 38 1 3.9926 1.0358 0.6321 39 1 3.6563 3.4812 0.3962 40 1 3.3760 3.2742 -1.3494 41 1 4.8434 5.6232 -0.0568 42 1 4.5900 5.4299 -1.8124 43 1 6.2375 7.3756 -0.7005 44 1 6.4728 6.7057 -2.3483 45 1 10.3608 5.6043 -0.1841 46 1 9.8694 4.4318 -1.4307 47 1 11.0072 5.7292 -3.1663 48 1 12.1553 5.4305 -1.8348 49 1 14.5351 5.8622 -3.2562 50 1 9.9005 8.2652 -3.1256 51 1 10.4783 9.2738 -1.7730 52 1 8.1962 8.2662 -1.3692 53 1 9.4040 7.7959 -0.1489 54 1 7.6552 4.1430 -2.2705 55 1 8.0197 3.6142 -0.5993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700170013.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:44 Heat of formation + Delta-G solvation = -14.265341 kcal Electronic energy + Delta-G solvation = -30066.417978 eV Core-core repulsion = 26138.274452 eV Total energy + Delta-G solvation = -3928.143526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.32171 -39.95744 -38.75843 -38.02742 -35.82443 -33.62466 -33.17178 -32.08896 -31.33970 -30.45595 -29.61800 -27.98353 -27.27053 -25.22922 -24.52977 -24.05437 -23.00020 -21.75300 -21.54324 -20.81383 -20.06700 -18.82976 -18.36854 -17.66776 -16.99331 -16.78082 -16.69420 -16.17411 -16.03218 -15.60646 -15.37278 -15.31446 -15.24289 -15.20300 -14.86721 -14.68380 -14.51718 -14.05655 -13.74517 -13.71750 -13.46940 -13.17570 -13.13211 -13.06057 -12.81660 -12.68059 -12.66178 -12.56762 -12.48617 -12.30212 -12.23743 -12.03365 -11.91193 -11.84198 -11.76035 -11.73737 -11.43728 -11.37172 -10.97789 -10.58450 -9.71304 -9.37007 -9.32870 -8.68889 -7.88124 -5.32582 1.45701 1.48263 1.55057 1.56478 1.82934 2.50279 2.86729 3.00850 3.27492 3.38555 3.66968 3.70775 3.78103 3.89732 4.05146 4.10779 4.15306 4.21489 4.30326 4.32567 4.34902 4.39754 4.51024 4.55092 4.55670 4.59789 4.61918 4.63670 4.66428 4.69730 4.81210 4.84845 4.88169 4.90326 4.95531 4.98740 5.00777 5.03985 5.09965 5.14069 5.16573 5.23506 5.29200 5.37657 5.37728 5.60678 5.66414 6.01270 6.08431 6.11907 6.24542 6.36619 6.49328 7.08411 7.12500 7.83951 8.37844 9.18605 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029810 B = 0.001843 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.044093 B =15185.118426 C =15743.105009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 N -0.546 5.546 4 C 0.014 3.986 5 C 0.074 3.926 6 C -0.116 4.116 7 C 0.522 3.478 8 O -0.594 6.594 9 N -0.617 5.617 10 C 0.102 3.898 11 C -0.115 4.115 12 C 0.071 3.929 13 H 0.051 0.949 14 N -0.527 5.527 15 C 0.051 3.949 16 C 0.187 3.813 17 N -0.614 5.614 18 C -0.264 4.264 19 H 0.070 0.930 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.273 1.273 26 C 0.143 3.857 27 C 0.058 3.942 28 C 0.117 3.883 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.020 0.980 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.018 0.982 46 H 0.071 0.929 47 H -0.002 1.002 48 H 0.054 0.946 49 H 0.250 0.750 50 H 0.018 0.982 51 H 0.063 0.937 52 H 0.105 0.895 53 H 0.023 0.977 54 H 0.064 0.936 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.672 -4.374 8.133 31.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.270 5.270 4 C -0.134 4.134 5 C -0.055 4.055 6 C -0.155 4.155 7 C 0.313 3.687 8 O -0.475 6.475 9 N -0.351 5.351 10 C -0.020 4.020 11 C -0.153 4.153 12 C -0.038 4.038 13 H 0.069 0.931 14 N -0.252 5.252 15 C -0.079 4.079 16 C 0.061 3.939 17 N -0.338 5.338 18 C -0.394 4.394 19 H 0.087 0.913 20 C -0.248 4.248 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.017 3.983 27 C -0.071 4.071 28 C -0.006 4.006 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.124 0.876 44 H 0.105 0.895 45 H 0.036 0.964 46 H 0.089 0.911 47 H 0.017 0.983 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.036 0.964 51 H 0.081 0.919 52 H 0.124 0.876 53 H 0.041 0.959 54 H 0.082 0.918 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.582 -4.825 7.205 30.827 hybrid contribution 2.371 -0.627 1.484 2.866 sum -27.211 -5.452 8.689 29.080 Atomic orbital electron populations 1.21759 0.93364 1.02297 1.02573 1.22161 0.97211 0.88263 1.00651 1.62055 1.12496 1.16696 1.35764 1.22595 1.02282 0.99722 0.88801 1.21706 0.87406 0.95827 1.00518 1.21542 0.88744 0.98998 1.06242 1.21018 0.91235 0.81227 0.75264 1.90702 1.68277 1.34578 1.53942 1.48567 1.08683 1.07928 1.69912 1.22327 0.95801 0.79860 1.03995 1.22724 0.90795 0.98141 1.03602 1.22747 0.91761 0.93466 0.95825 0.93067 1.61936 1.02996 1.02967 1.57325 1.22560 0.91207 0.96846 0.97242 1.20573 0.94603 0.84336 0.94374 1.44389 1.04553 1.02091 1.82782 1.19518 0.83903 1.07199 1.28829 0.91260 1.25806 1.01226 1.00101 0.97641 1.70189 1.28303 1.28870 1.30887 0.85328 0.79300 0.77697 0.78049 1.20602 1.22144 1.19851 1.21172 0.86710 0.93792 0.96614 1.22480 0.99485 0.88140 0.96948 1.22022 0.81924 0.96125 1.00578 0.92036 0.91367 0.92106 0.91135 0.95234 0.89964 0.89884 0.96131 0.91536 0.95758 0.86548 0.86079 0.88606 0.88621 0.87572 0.89544 0.96411 0.91087 0.98340 0.92800 0.94138 0.96367 0.91893 0.87648 0.95892 0.91796 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.84 71.98 0.71 -0.65 16 2 C 0.04 0.59 5.68 86.30 0.49 1.08 16 3 N -0.55 -7.73 4.76 -922.44 -4.39 -12.13 16 4 C 0.01 0.14 9.13 127.69 1.17 1.31 16 5 C 0.07 1.32 4.25 86.30 0.37 1.68 16 6 C -0.12 -1.70 4.82 29.85 0.14 -1.56 16 7 C 0.52 12.48 7.85 87.66 0.69 13.17 16 8 O -0.59 -20.11 16.24 -3.01 -0.05 -20.16 16 9 N -0.62 -13.38 3.33 -811.80 -2.70 -16.08 16 10 C 0.10 1.30 6.49 86.73 0.56 1.86 16 11 C -0.11 -1.83 5.47 31.78 0.17 -1.65 16 12 C 0.07 1.76 2.71 46.31 0.13 1.89 16 13 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 14 N -0.53 -17.15 4.53 -861.92 -3.90 -21.05 16 15 C 0.05 2.01 5.46 86.38 0.47 2.48 16 16 C 0.19 9.41 5.42 86.35 0.47 9.88 16 17 N -0.61 -31.39 3.04 -698.10 -2.12 -33.51 16 18 C -0.26 -14.71 9.63 84.04 0.81 -13.90 16 19 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 20 C -0.05 -2.98 4.94 84.86 0.42 -2.56 16 21 N -0.94 -56.59 11.15 21.65 0.24 -56.35 16 22 Si 0.97 45.42 29.59 68.60 2.03 47.45 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 C 0.14 5.80 6.69 86.35 0.58 6.38 16 27 C 0.06 1.84 5.50 86.38 0.48 2.31 16 28 C 0.12 3.20 5.19 86.86 0.45 3.65 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.51 6.47 -2.39 -0.02 0.49 16 32 H 0.07 0.98 7.93 -2.39 -0.02 0.97 16 33 H 0.03 0.41 8.12 -2.39 -0.02 0.39 16 34 H 0.08 0.65 6.47 -2.39 -0.02 0.64 16 35 H 0.08 0.69 6.30 -2.39 -0.02 0.68 16 36 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.07 1.39 7.89 -2.38 -0.02 1.37 16 38 H 0.02 0.51 8.08 -2.38 -0.02 0.50 16 39 H 0.12 1.17 6.55 -2.39 -0.02 1.16 16 40 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.11 1.21 7.94 -2.38 -0.02 1.19 16 44 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 2.66 6.71 -2.39 -0.02 2.64 16 47 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.05 3.06 6.12 -2.39 -0.01 3.04 16 49 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 50 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 52 H 0.11 2.48 6.97 -2.39 -0.02 2.46 16 53 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 54 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 55 H 0.05 1.66 7.75 -2.39 -0.02 1.64 16 Total: -1.00 -73.13 416.29 -1.97 -75.10 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.83 Total: 11.34 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 8.10 Total: 25.38 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -12.88 Total: -139.12 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -73.13 -1.97 -75.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700170013.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.833 kcal (2) G-P(sol) polarization free energy of solvation -73.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds