Wall clock time and date at job start Tue Mar 31 2020 22:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21714 * 120.00248 * 359.97438 * 16 15 14 18 18 C 1.46428 * 119.99572 * 179.97438 * 16 15 14 19 19 S 1.76201 * 126.16863 * 359.68692 * 18 16 15 20 20 C 1.70918 * 90.40282 * 179.97438 * 19 18 16 21 21 Cl 1.73596 * 124.69773 * 180.02562 * 20 19 18 22 22 N 1.29519 * 110.60815 * 0.34893 * 20 19 18 23 23 C 1.31044 * 117.41297 * 359.72610 * 22 20 19 24 24 Cl 1.73602 * 123.04603 * 179.97438 * 23 22 20 25 25 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 27 27 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 28 28 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 29 29 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 30 30 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 31 31 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 32 32 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5622 -3.2053 0.5994 12 6 4.2641 -2.9783 -1.4246 13 8 5.0834 -2.0720 -2.1659 14 6 5.4967 -2.2577 0.6257 15 7 5.3536 -1.6600 1.9556 16 6 6.4486 -1.3804 2.6900 17 8 7.5562 -1.6249 2.2486 18 6 6.3056 -0.7825 4.0190 19 16 4.7898 -0.3563 4.8098 20 6 5.6475 0.2082 6.1763 21 17 4.9105 0.8759 7.5991 22 7 6.9237 0.0750 6.0004 23 6 7.3254 -0.4475 4.8678 24 17 8.9996 -0.6920 4.4790 25 1 -0.4851 0.8400 0.0004 26 1 3.8646 -0.3621 0.0055 27 1 4.7298 -3.9637 -1.4143 28 1 3.2818 -3.0456 -1.8922 29 1 5.2233 -2.3315 -3.0869 30 1 6.0078 -3.2167 0.7115 31 1 6.0786 -1.5916 -0.0114 32 1 4.4709 -1.4648 2.3072 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700806482.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:08 Heat of formation + Delta-G solvation = -50.988004 kcal Electronic energy + Delta-G solvation = -22225.628224 eV Core-core repulsion = 18400.037335 eV Total energy + Delta-G solvation = -3825.590889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 339.000 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.53234 -40.47674 -38.69023 -38.32428 -37.78105 -36.45577 -35.32028 -33.48220 -32.00929 -30.47931 -27.73154 -26.44089 -25.27413 -23.16341 -21.82270 -21.41436 -20.48428 -19.79014 -18.43530 -18.22403 -17.52528 -17.10495 -16.85629 -16.46514 -16.37131 -16.01779 -15.73686 -15.01742 -14.97873 -14.65856 -14.45453 -14.21735 -13.72856 -13.50375 -13.19981 -12.91808 -12.84885 -12.61334 -12.52611 -12.32610 -12.30353 -11.87531 -11.75554 -11.52564 -11.20660 -11.05076 -10.99137 -10.71471 -10.27055 -10.05380 -9.31290 -7.97978 -5.30588 -1.42366 -0.79850 -0.33953 0.24693 0.76214 0.94443 1.38322 1.44355 1.48077 1.78479 1.90341 2.50602 3.14872 3.33843 3.45667 3.57383 3.71922 3.72750 3.93597 4.39562 4.55001 4.64579 4.80912 4.98506 5.17967 5.28483 5.69978 5.82125 6.24803 6.26969 6.89097 7.06015 7.11918 7.85860 8.04479 9.22750 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.010844 B = 0.004331 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.407501 B = 6463.771666 C = 8356.301285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.048 4.048 3 Si 0.934 3.066 4 H -0.293 1.293 5 H -0.296 1.296 6 H -0.254 1.254 7 C -0.221 4.221 8 H 0.071 0.929 9 N -0.742 5.742 10 C 0.164 3.836 11 H 0.086 0.914 12 C 0.066 3.934 13 O -0.584 6.584 14 C 0.126 3.874 15 N -0.707 5.707 16 C 0.591 3.409 17 O -0.534 6.534 18 C -0.301 4.301 19 S 0.353 5.647 20 C 0.076 3.924 21 Cl 0.068 6.932 22 N -0.476 5.476 23 C 0.185 3.815 24 Cl 0.035 6.965 25 H 0.256 0.744 26 H 0.363 0.637 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.388 0.612 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.200 -3.533 10.917 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.241 4.241 3 Si 0.763 3.237 4 H -0.220 1.220 5 H -0.223 1.223 6 H -0.179 1.179 7 C -0.352 4.352 8 H 0.088 0.912 9 N -0.385 5.385 10 C 0.055 3.945 11 H 0.103 0.897 12 C -0.015 4.015 13 O -0.391 6.391 14 C 0.003 3.997 15 N -0.359 5.359 16 C 0.375 3.625 17 O -0.413 6.413 18 C -0.428 4.428 19 S 0.606 5.394 20 C -0.223 4.223 21 Cl 0.096 6.904 22 N -0.195 5.195 23 C 0.018 3.982 24 Cl 0.063 6.937 25 H 0.065 0.935 26 H 0.196 0.804 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.236 0.764 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 12.089 -3.318 11.486 17.002 hybrid contribution 0.672 1.039 -0.532 1.347 sum 12.761 -2.279 10.954 16.972 Atomic orbital electron populations 1.69831 1.06780 1.26346 1.59814 1.25212 0.95655 1.00124 1.03060 0.85745 0.78873 0.81494 0.77606 1.21995 1.22251 1.17876 1.19013 0.82028 0.93540 1.40572 0.91153 1.42746 1.02516 1.03404 1.89867 1.20869 0.90649 0.88954 0.93995 0.89668 1.22792 0.93523 0.92083 0.93118 1.86457 1.71934 1.52644 1.28048 1.21611 0.97597 0.99304 0.81236 1.45911 1.08493 1.62930 1.18566 1.16529 0.85036 0.78479 0.82469 1.90867 1.25417 1.53724 1.71302 1.25952 0.97409 1.16404 1.03008 1.84503 1.02543 1.49385 1.03002 1.27383 0.92457 1.04050 0.98443 1.98479 1.77315 1.81916 1.32675 1.65315 1.14901 1.18011 1.21271 1.20747 0.90194 0.98485 0.88726 1.98445 1.08975 1.94201 1.92061 0.93479 0.80410 0.91153 0.94625 0.76351 0.88914 0.91441 0.75660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -58.23 13.97 21.65 0.30 -57.93 16 2 C -0.05 -2.61 5.50 84.86 0.47 -2.14 16 3 Si 0.93 43.11 27.74 68.60 1.90 45.01 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.25 -10.59 6.51 99.48 0.65 -9.94 16 7 C -0.22 -11.04 10.41 84.04 0.87 -10.16 16 8 H 0.07 3.80 8.06 -2.91 -0.02 3.77 16 9 N -0.74 -30.18 4.31 -322.93 -1.39 -31.57 16 10 C 0.16 5.15 2.84 44.99 0.13 5.28 16 11 H 0.09 2.55 8.08 -2.39 -0.02 2.53 16 12 C 0.07 1.84 6.86 71.98 0.49 2.33 16 13 O -0.58 -16.79 12.64 -148.98 -1.88 -18.67 16 14 C 0.13 3.60 5.12 86.38 0.44 4.04 16 15 N -0.71 -20.29 5.38 -467.31 -2.52 -22.80 16 16 C 0.59 17.69 7.78 86.38 0.67 18.37 16 17 O -0.53 -18.29 15.16 -4.39 -0.07 -18.35 16 18 C -0.30 -8.03 6.51 24.08 0.16 -7.88 16 19 S 0.35 7.49 22.34 -56.49 -1.26 6.23 16 20 C 0.08 1.65 8.01 130.58 1.05 2.70 16 21 Cl 0.07 1.19 29.33 -2.72 -0.08 1.11 16 22 N -0.48 -12.24 10.51 -183.35 -1.93 -14.17 16 23 C 0.19 5.06 7.41 84.48 0.63 5.69 16 24 Cl 0.03 0.94 27.38 -2.72 -0.07 0.86 16 25 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 26 H 0.36 15.27 5.66 -92.71 -0.52 14.74 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.39 7.48 9.12 -74.06 -0.68 6.81 16 30 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.07 2.17 7.39 -2.39 -0.02 2.16 16 32 H 0.41 11.47 7.32 -92.71 -0.68 10.79 16 Total: -1.00 -65.87 328.29 -2.80 -68.66 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.71 Total: 23.39 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: 4.91 Total: 18.22 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -5.53 Total: -126.47 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -1.95 Total: -37.02 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.90 Total: 45.01 kcal Atomic # 16 Polarization: 7.49 SS G_CDS: -1.26 Total: 6.23 kcal Atomic # 17 Polarization: 2.13 SS G_CDS: -0.15 Total: 1.97 kcal Total: -65.87 -2.80 -68.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700806482.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.674 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds