Wall clock time and date at job start Tue Mar 31 2020 22:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21726 * 120.00211 * 0.02562 * 16 15 14 18 18 C 1.46429 * 119.99969 * 180.02562 * 16 15 14 19 19 S 1.76200 * 126.16460 * 359.69386 * 18 16 15 20 20 C 1.70917 * 90.40328 * 179.97438 * 19 18 16 21 21 Cl 1.73594 * 124.69979 * 180.02562 * 20 19 18 22 22 N 1.29526 * 110.60387 * 0.34611 * 20 19 18 23 23 C 1.31041 * 117.41578 * 359.72910 * 22 20 19 24 24 Cl 1.73601 * 123.04491 * 179.97438 * 23 22 20 25 25 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 26 26 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 28 28 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 29 29 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 30 30 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 31 31 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 32 32 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3876 -6.2325 2.2182 18 6 -0.4863 -4.7399 3.9988 19 16 -0.0833 -3.2255 4.8042 20 6 -1.0055 -3.6904 6.1661 21 17 -1.2073 -2.7295 7.5977 22 7 -1.5274 -4.8619 5.9848 23 6 -1.2807 -5.4628 4.8467 24 17 -1.9046 -7.0337 4.4509 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3881 -0.0015 27 1 2.9641 -3.2122 -1.9146 28 1 3.0368 -4.9285 -1.4486 29 1 1.3708 -4.5275 -3.1130 30 1 0.3130 -4.9200 -0.0361 31 1 1.7583 -5.6761 0.6765 32 1 1.0152 -3.4802 2.2898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700806483.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:12 Heat of formation + Delta-G solvation = -29.157592 kcal Electronic energy + Delta-G solvation = -22162.924365 eV Core-core repulsion = 18338.280113 eV Total energy + Delta-G solvation = -3824.644251 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 339.000 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.39809 -39.23612 -37.44833 -37.23974 -36.68926 -35.12116 -33.86867 -31.73312 -30.61263 -28.17700 -26.57394 -25.24683 -23.56287 -21.99363 -20.57479 -20.20592 -19.26631 -17.82802 -17.29204 -16.76086 -16.30474 -15.93824 -15.61275 -15.38656 -14.91320 -14.62034 -14.06698 -13.76583 -13.59353 -13.48232 -13.20191 -12.72298 -12.43924 -12.00525 -11.96691 -11.58060 -11.50784 -11.19660 -10.95500 -10.81886 -10.52479 -10.43503 -10.11718 -9.97812 -9.93954 -9.57524 -9.26961 -9.12400 -9.06125 -8.84935 -7.19193 -6.21012 -3.23702 -0.34737 0.20866 0.72493 1.24349 1.85857 2.02041 3.02294 3.14764 3.43519 3.47633 3.62171 4.23413 4.54177 4.69439 4.78895 4.87188 5.22821 5.33011 5.46319 5.73004 5.85526 5.87229 6.13258 6.31488 6.53327 6.58549 6.75824 7.54057 7.66619 8.06782 8.16187 8.64380 9.07746 9.94702 10.09668 11.26305 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.004096 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.575023 B = 6834.748317 C = 9126.166930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.038 4.038 3 Si 1.080 2.920 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.342 4.342 8 H 0.065 0.935 9 N -0.725 5.725 10 C 0.170 3.830 11 H 0.068 0.932 12 C 0.060 3.940 13 O -0.562 6.562 14 C 0.118 3.882 15 N -0.705 5.705 16 C 0.588 3.412 17 O -0.512 6.512 18 C -0.279 4.279 19 S 0.316 5.684 20 C 0.072 3.928 21 Cl 0.046 6.954 22 N -0.461 5.461 23 C 0.188 3.812 24 Cl 0.038 6.962 25 H 0.257 0.743 26 H 0.372 0.628 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.366 0.634 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 -8.704 10.279 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.236 4.236 3 Si 0.911 3.089 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.472 4.472 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.086 0.914 12 C -0.021 4.021 13 O -0.366 6.366 14 C -0.006 4.006 15 N -0.357 5.357 16 C 0.371 3.629 17 O -0.389 6.389 18 C -0.406 4.406 19 S 0.568 5.432 20 C -0.228 4.228 21 Cl 0.073 6.927 22 N -0.179 5.179 23 C 0.022 3.978 24 Cl 0.066 6.934 25 H 0.069 0.931 26 H 0.205 0.795 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.211 0.789 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.783 -6.964 10.852 13.017 hybrid contribution -0.148 -2.209 -0.405 2.250 sum 1.636 -9.173 10.447 13.999 Atomic orbital electron populations 1.70842 1.06068 1.28732 1.52477 1.25738 0.96978 1.00901 1.00012 0.83233 0.73913 0.75458 0.76293 1.22200 1.22202 1.21385 1.20038 0.91948 0.85617 1.49639 0.91662 1.42396 1.05074 1.00074 1.89306 1.20547 0.94972 0.86413 0.92148 0.91394 1.22997 0.86481 0.97474 0.95179 1.86541 1.32151 1.92030 1.25859 1.21685 0.99973 0.97392 0.81545 1.45902 1.50383 1.21189 1.18247 1.16418 0.79444 0.84880 0.82143 1.90884 1.56118 1.21436 1.70507 1.26076 1.11012 1.00338 1.03128 1.84638 1.41775 1.13156 1.03646 1.27126 1.03061 0.94854 0.97715 1.98461 1.95941 1.65191 1.33076 1.65259 1.23938 1.07567 1.21173 1.20641 0.96656 0.92240 0.88309 1.98450 1.85000 1.18093 1.91833 0.93112 0.79454 0.93131 0.95299 0.78924 0.90066 0.91336 0.75807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.26 13.70 55.49 0.76 -26.50 16 2 C -0.04 -1.01 5.50 -17.43 -0.10 -1.10 16 3 Si 1.08 24.20 29.92 -169.99 -5.09 19.12 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.30 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.34 -8.65 9.93 -15.06 -0.15 -8.80 16 8 H 0.07 1.62 7.83 -52.48 -0.41 1.21 16 9 N -0.73 -16.31 4.51 -53.43 -0.24 -16.55 16 10 C 0.17 3.05 2.84 -67.93 -0.19 2.85 16 11 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 12 C 0.06 0.99 6.86 37.16 0.25 1.24 16 13 O -0.56 -9.49 12.64 -35.23 -0.45 -9.93 16 14 C 0.12 1.95 5.12 -4.04 -0.02 1.93 16 15 N -0.71 -11.40 5.38 -61.69 -0.33 -11.73 16 16 C 0.59 9.71 7.78 -12.96 -0.10 9.61 16 17 O -0.51 -9.50 15.16 5.17 0.08 -9.42 16 18 C -0.28 -4.11 6.51 -36.79 -0.24 -4.35 16 19 S 0.32 3.84 22.34 -107.50 -2.40 1.44 16 20 C 0.07 0.89 8.01 51.79 0.42 1.31 16 21 Cl 0.05 0.46 29.33 -51.86 -1.52 -1.06 16 22 N -0.46 -6.52 10.51 -9.31 -0.10 -6.61 16 23 C 0.19 2.78 7.41 -18.39 -0.14 2.65 16 24 Cl 0.04 0.55 27.38 -51.86 -1.42 -0.87 16 25 H 0.26 7.48 6.77 -40.82 -0.28 7.20 16 26 H 0.37 9.09 6.63 -40.82 -0.27 8.81 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.37 4.41 9.12 45.56 0.42 4.82 16 30 H 0.08 1.51 7.39 -51.93 -0.38 1.12 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 6.53 7.32 -40.82 -0.30 6.23 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -30.97 329.71 -7.71 -38.68 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -1.71 Total: 13.12 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -0.27 Total: 5.34 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.09 Total: -61.39 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.37 Total: -19.35 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.09 Total: 19.12 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -2.40 Total: 1.44 kcal Atomic # 17 Polarization: 1.01 SS G_CDS: -2.94 Total: -1.93 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.97 -7.71 -38.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700806483.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.524 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds