Wall clock time and date at job start Tue Mar 31 2020 22:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47219 * 34.99842 * 10 9 7 12 12 C 1.52999 * 109.46890 * 275.00034 * 10 9 7 13 13 O 1.42903 * 109.46807 * 294.99741 * 12 10 9 14 14 C 1.52997 * 109.47167 * 154.99975 * 10 9 7 15 15 N 1.46505 * 109.46985 * 304.99505 * 14 10 9 16 16 C 1.34774 * 119.99861 * 180.02562 * 15 14 10 17 17 O 1.21726 * 120.00211 * 0.02562 * 16 15 14 18 18 C 1.46429 * 119.99969 * 180.02562 * 16 15 14 19 19 S 1.76200 * 126.16460 * 359.69386 * 18 16 15 20 20 C 1.70917 * 90.40328 * 179.97438 * 19 18 16 21 21 Cl 1.73594 * 124.69979 * 180.02562 * 20 19 18 22 22 N 1.29526 * 110.60387 * 0.34611 * 20 19 18 23 23 C 1.31041 * 117.41578 * 359.72910 * 22 20 19 24 24 Cl 1.73601 * 123.04491 * 179.97438 * 23 22 20 25 25 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 26 26 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47298 * 54.99525 * 12 10 9 28 28 H 1.08997 * 109.46949 * 174.99894 * 12 10 9 29 29 H 0.96702 * 113.99897 * 179.97438 * 13 12 10 30 30 H 1.08996 * 109.47726 * 64.99738 * 14 10 9 31 31 H 1.09001 * 109.46766 * 185.00478 * 14 10 9 32 32 H 0.96994 * 120.00104 * 0.02562 * 15 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9709 -3.5519 0.5747 12 6 2.4163 -4.0324 -1.4507 13 8 1.2192 -4.2837 -2.1896 14 6 1.1830 -4.7535 0.5990 15 7 0.7416 -4.3398 1.9333 16 6 -0.0446 -5.1536 2.6654 17 8 -0.3876 -6.2325 2.2182 18 6 -0.4863 -4.7399 3.9988 19 16 -0.0833 -3.2255 4.8042 20 6 -1.0055 -3.6904 6.1661 21 17 -1.2073 -2.7295 7.5977 22 7 -1.5274 -4.8619 5.9848 23 6 -1.2807 -5.4628 4.8467 24 17 -1.9046 -7.0337 4.4509 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3881 -0.0015 27 1 2.9641 -3.2122 -1.9146 28 1 3.0368 -4.9285 -1.4486 29 1 1.3708 -4.5275 -3.1130 30 1 0.3130 -4.9200 -0.0361 31 1 1.7583 -5.6761 0.6765 32 1 1.0152 -3.4802 2.2898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700806483.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:11 Heat of formation + Delta-G solvation = -53.947900 kcal Electronic energy + Delta-G solvation = -22163.999353 eV Core-core repulsion = 18338.280113 eV Total energy + Delta-G solvation = -3825.719240 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 339.000 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54305 -40.49127 -38.71964 -38.33190 -37.79343 -36.55004 -35.49809 -33.31779 -31.86357 -29.81396 -27.72900 -26.49073 -25.47904 -23.20558 -21.93311 -21.43133 -20.43002 -19.53691 -18.59606 -18.16028 -17.53414 -17.09598 -16.98469 -16.45622 -16.26084 -16.01884 -15.68866 -15.39978 -14.97609 -14.93256 -14.50433 -13.78626 -13.53205 -13.45285 -13.05272 -12.92273 -12.67877 -12.53730 -12.51847 -12.32313 -12.05093 -11.85734 -11.53656 -11.24847 -11.20539 -11.05249 -10.93681 -10.75258 -10.29239 -10.06791 -9.08274 -8.28437 -5.24845 -1.43004 -0.80185 -0.34505 0.24032 0.75140 0.93473 1.65156 1.73845 1.75496 1.87350 1.88992 2.76078 3.14039 3.45092 3.52806 3.56176 3.70738 3.75768 3.92209 4.34590 4.48988 4.55996 4.75759 4.91665 5.14008 5.24488 5.68580 5.69124 6.23826 6.57271 6.86198 7.00125 7.14175 8.03432 8.17603 9.21918 Molecular weight = 339.00amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.004096 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.575023 B = 6834.748317 C = 9126.166930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.097 4.097 3 Si 1.123 2.877 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.304 1.304 7 C -0.325 4.325 8 H 0.073 0.927 9 N -0.735 5.735 10 C 0.165 3.835 11 H 0.081 0.919 12 C 0.065 3.935 13 O -0.585 6.585 14 C 0.129 3.871 15 N -0.704 5.704 16 C 0.590 3.410 17 O -0.537 6.537 18 C -0.303 4.303 19 S 0.358 5.642 20 C 0.075 3.925 21 Cl 0.070 6.930 22 N -0.476 5.476 23 C 0.186 3.814 24 Cl 0.034 6.966 25 H 0.243 0.757 26 H 0.359 0.641 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.386 0.614 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 -8.632 10.945 14.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.289 4.289 3 Si 0.950 3.050 4 H -0.208 1.208 5 H -0.201 1.201 6 H -0.231 1.231 7 C -0.456 4.456 8 H 0.091 0.909 9 N -0.377 5.377 10 C 0.056 3.944 11 H 0.099 0.901 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.355 5.355 16 C 0.374 3.626 17 O -0.416 6.416 18 C -0.429 4.429 19 S 0.611 5.389 20 C -0.224 4.224 21 Cl 0.097 6.903 22 N -0.195 5.195 23 C 0.019 3.981 24 Cl 0.063 6.937 25 H 0.054 0.946 26 H 0.191 0.809 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.235 0.765 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.393 -6.928 11.514 13.859 hybrid contribution -0.597 -2.277 -0.574 2.423 sum 2.797 -9.205 10.939 14.568 Atomic orbital electron populations 1.70959 1.07331 1.27909 1.56055 1.26933 0.96933 1.04236 1.00787 0.82657 0.73455 0.71997 0.76906 1.20785 1.20075 1.23070 1.20351 0.92355 0.86482 1.46430 0.90911 1.42511 1.04565 1.01074 1.89532 1.20814 0.95087 0.84857 0.93668 0.90130 1.22843 0.86532 0.98684 0.93498 1.86497 1.32786 1.92177 1.27684 1.21543 0.99050 0.97661 0.81252 1.45860 1.50412 1.21139 1.18091 1.16571 0.78927 0.84474 0.82620 1.90862 1.56970 1.22433 1.71326 1.25927 1.12191 1.02033 1.02790 1.84495 1.40760 1.11091 1.02564 1.27397 1.02092 0.94470 0.98446 1.98475 1.95727 1.64328 1.31737 1.65316 1.24799 1.08326 1.21061 1.20734 0.96548 0.92247 0.88608 1.98442 1.85016 1.18375 1.91900 0.94605 0.80918 0.94681 0.91371 0.76536 0.92222 0.89269 0.75754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.44 13.70 21.65 0.30 -57.14 16 2 C -0.10 -5.15 5.50 84.86 0.47 -4.69 16 3 Si 1.12 48.13 29.92 68.60 2.05 50.18 16 4 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.32 -16.12 9.93 84.03 0.83 -15.28 16 8 H 0.07 3.46 7.83 -2.91 -0.02 3.44 16 9 N -0.73 -32.66 4.51 -322.94 -1.46 -34.11 16 10 C 0.16 5.63 2.84 44.99 0.13 5.76 16 11 H 0.08 2.57 8.08 -2.38 -0.02 2.55 16 12 C 0.07 1.99 6.86 71.98 0.49 2.49 16 13 O -0.58 -18.93 12.64 -148.98 -1.88 -20.81 16 14 C 0.13 4.11 5.12 86.38 0.44 4.55 16 15 N -0.70 -22.27 5.38 -467.31 -2.52 -24.78 16 16 C 0.59 19.26 7.78 86.38 0.67 19.93 16 17 O -0.54 -19.84 15.16 -4.43 -0.07 -19.91 16 18 C -0.30 -8.75 6.51 24.08 0.16 -8.59 16 19 S 0.36 8.25 22.34 -56.49 -1.26 6.99 16 20 C 0.08 1.75 8.01 130.58 1.05 2.80 16 21 Cl 0.07 1.29 29.33 -2.72 -0.08 1.21 16 22 N -0.48 -13.00 10.51 -183.36 -1.93 -14.92 16 23 C 0.19 5.42 7.41 84.48 0.63 6.04 16 24 Cl 0.03 0.98 27.38 -2.72 -0.07 0.91 16 25 H 0.24 14.51 6.77 -92.71 -0.63 13.88 16 26 H 0.36 17.76 6.63 -92.71 -0.61 17.15 16 27 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.39 8.66 9.12 -74.06 -0.68 7.99 16 30 H 0.06 2.20 7.39 -2.39 -0.02 2.18 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.41 12.76 7.32 -92.71 -0.68 12.09 16 Total: -1.00 -65.91 329.71 -2.64 -68.55 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.59 Total: 30.82 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 4.87 Total: 13.02 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -5.60 Total: -130.96 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.95 Total: -40.71 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.05 Total: 50.18 kcal Atomic # 16 Polarization: 8.25 SS G_CDS: -1.26 Total: 6.99 kcal Atomic # 17 Polarization: 2.27 SS G_CDS: -0.15 Total: 2.12 kcal Total: -65.91 -2.64 -68.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700806483.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.607 kcal (2) G-P(sol) polarization free energy of solvation -65.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds