Wall clock time and date at job start Tue Mar 31 2020 22:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.06292 * 2 1 4 4 C 1.53990 * 109.91755 * 238.79617 * 2 1 3 5 5 H 1.08995 * 110.39655 * 120.46198 * 4 2 1 6 6 C 1.50704 * 110.31144 * 358.33388 * 4 2 1 7 7 O 1.21278 * 119.99860 * 275.35571 * 6 4 2 8 8 N 1.34775 * 119.99788 * 95.35387 * 6 4 2 9 9 C 1.46498 * 120.00007 * 180.02562 * 8 6 4 10 10 C 1.52993 * 109.47100 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.47161 * 179.97438 * 10 9 8 12 12 N 1.46902 * 109.47267 * 180.02562 * 11 10 9 13 13 C 1.46894 * 111.00207 * 294.30330 * 12 11 10 14 14 C 1.53236 * 109.34255 * 172.74418 * 13 12 11 15 15 N 1.47083 * 108.51657 * 53.83110 * 14 13 12 16 16 C 1.36937 * 120.87859 * 128.79734 * 15 14 13 17 17 H 1.07996 * 119.99771 * 209.60184 * 16 15 14 18 18 C 1.38808 * 120.00348 * 29.60012 * 16 15 14 19 19 N 1.31621 * 119.99770 * 18.48661 * 18 16 15 20 20 Si 1.86804 * 120.00350 * 198.48523 * 18 16 15 21 21 H 1.48498 * 109.46950 * 60.00035 * 20 18 16 22 22 H 1.48499 * 109.47239 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46735 * 300.00084 * 20 18 16 24 24 C 1.47076 * 118.23872 * 308.81074 * 15 14 13 25 25 C 1.46895 * 110.99799 * 170.00007 * 12 11 10 26 26 C 1.54595 * 105.13763 * 239.42046 * 4 2 1 27 27 C 1.54941 * 102.92345 * 338.04133 * 26 4 2 28 28 N 1.47896 * 109.91541 * 121.20432 * 2 1 3 29 29 C 1.46909 * 110.99960 * 265.19745 * 28 2 1 30 30 H 1.08999 * 109.46856 * 182.78448 * 1 2 3 31 31 H 1.08997 * 109.46979 * 302.78898 * 1 2 3 32 32 H 1.09001 * 109.46938 * 62.79088 * 1 2 3 33 33 H 0.96996 * 120.00106 * 359.97438 * 8 6 4 34 34 H 1.08999 * 109.47178 * 59.99779 * 9 8 6 35 35 H 1.09002 * 109.46996 * 300.00090 * 9 8 6 36 36 H 1.09002 * 109.46991 * 60.00512 * 10 9 8 37 37 H 1.09002 * 109.47512 * 300.00070 * 10 9 8 38 38 H 1.09002 * 109.47046 * 300.00455 * 11 10 9 39 39 H 1.08999 * 109.47066 * 60.00106 * 11 10 9 40 40 H 1.09000 * 109.49669 * 292.70767 * 13 12 11 41 41 H 1.09008 * 109.49115 * 52.78567 * 13 12 11 42 42 H 1.08996 * 109.62824 * 294.12179 * 14 13 12 43 43 H 1.08999 * 109.78704 * 173.63482 * 14 13 12 44 44 H 0.97003 * 119.99983 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.63088 * 291.47728 * 24 15 14 46 46 H 1.08999 * 109.63005 * 170.89579 * 24 15 14 47 47 H 1.09001 * 109.49654 * 307.21208 * 25 12 11 48 48 H 1.08999 * 109.49609 * 67.29652 * 25 12 11 49 49 H 1.09003 * 110.72782 * 96.40240 * 26 4 2 50 50 H 1.09003 * 110.72618 * 219.68310 * 26 4 2 51 51 H 1.09001 * 110.66581 * 155.84815 * 27 26 4 52 52 H 1.08994 * 110.66616 * 278.98233 * 27 26 4 53 53 H 1.09003 * 109.46898 * 302.73356 * 29 28 2 54 54 H 1.09006 * 109.46894 * 62.72944 * 29 28 2 55 55 H 1.08998 * 109.47384 * 182.73550 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 -1.2383 5 1 2.6710 -0.0905 -1.8491 6 6 0.9046 -1.2894 -2.0494 7 8 0.4072 -2.3571 -1.7608 8 7 0.4290 -0.5850 -3.0954 9 6 -0.6893 -1.1090 -3.8835 10 6 -1.0311 -0.1228 -5.0021 11 6 -2.1987 -0.6703 -5.8256 12 7 -2.5265 0.2763 -6.9000 13 6 -3.0384 1.5391 -6.3512 14 6 -3.1961 2.5582 -7.4846 15 7 -4.0252 1.9577 -8.5407 16 6 -5.1153 2.6192 -9.0399 17 1 -5.9589 2.0612 -9.4183 18 6 -5.1360 4.0070 -9.0596 19 7 -4.0120 4.6835 -8.9519 20 14 -6.7588 4.9146 -9.2391 21 1 -7.6527 4.5585 -8.1080 22 1 -6.5106 6.3787 -9.2325 23 1 -7.4031 4.5280 -10.5199 24 6 -3.6525 0.6277 -9.0461 25 6 -3.4768 -0.3154 -7.8511 26 6 2.9059 -1.9116 -0.6762 27 6 3.2682 -1.4184 0.7473 28 7 2.0338 -0.7204 1.1893 29 6 2.3211 0.2124 2.2873 30 1 -0.3633 -1.0265 0.0499 31 1 -0.3633 0.5565 0.8639 32 1 -0.3633 0.4699 -0.9140 33 1 0.8266 0.2691 -3.3259 34 1 -1.5579 -1.2414 -3.2384 35 1 -0.4095 -2.0688 -4.3177 36 1 -0.1627 0.0099 -5.6473 37 1 -1.3110 0.8369 -4.5675 38 1 -1.9183 -1.6298 -6.2601 39 1 -3.0672 -0.8034 -5.1807 40 1 -4.0063 1.3654 -5.8808 41 1 -2.3375 1.9244 -5.6105 42 1 -2.2159 2.8116 -7.8882 43 1 -3.6803 3.4586 -7.1065 44 1 -4.0265 5.6533 -8.9653 45 1 -2.7161 0.6956 -9.5999 46 1 -4.4401 0.2498 -9.6980 47 1 -3.0939 -1.2751 -8.1985 48 1 -4.4385 -0.4633 -7.3600 49 1 2.3215 -2.8305 -0.6289 50 1 3.8053 -2.0557 -1.2749 51 1 3.4889 -2.2615 1.4020 52 1 4.1097 -0.7266 0.7121 53 1 3.0411 0.9586 1.9511 54 1 1.3998 0.7083 2.5932 55 1 2.7356 -0.3375 3.1322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713068514.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:42 Heat of formation + Delta-G solvation = -26.574775 kcal Electronic energy + Delta-G solvation = -29877.251315 eV Core-core repulsion = 25948.574012 eV Total energy + Delta-G solvation = -3928.677303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.54849 -39.82921 -39.15830 -37.00267 -35.78284 -33.80136 -33.30028 -32.43882 -31.75818 -31.64803 -28.65639 -27.55534 -25.87303 -25.86797 -24.51253 -24.13268 -22.71237 -22.20165 -21.92608 -20.82673 -20.33226 -18.72004 -18.02407 -17.46037 -17.04093 -16.86881 -16.56548 -16.28223 -15.94244 -15.85445 -15.46023 -15.40469 -15.28235 -15.22913 -14.91324 -14.57497 -14.53256 -14.07168 -13.55237 -13.50669 -13.37070 -13.20092 -13.14373 -12.94976 -12.79784 -12.72303 -12.59646 -12.52969 -12.33579 -12.25442 -12.15047 -12.08562 -11.95547 -11.90522 -11.78460 -11.69502 -11.48104 -11.30755 -10.78348 -10.58115 -10.06083 -9.40461 -9.25932 -8.65100 -7.89113 -5.35164 1.45996 1.48069 1.55190 1.62839 2.16577 2.50142 2.97900 3.01812 3.25705 3.50582 3.53888 3.69026 3.84020 3.96319 4.08028 4.14763 4.20417 4.26964 4.30519 4.35435 4.38810 4.44766 4.48725 4.49083 4.50404 4.62399 4.65554 4.67693 4.69953 4.71326 4.75250 4.80855 4.82699 4.90296 4.95904 5.01395 5.02882 5.03101 5.16070 5.22183 5.22515 5.25968 5.30388 5.34720 5.48499 5.62057 5.65660 5.91013 6.09260 6.19274 6.29130 6.37926 6.58044 7.13147 7.28058 7.83250 8.39300 9.17377 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.001820 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.653017 B =15381.890207 C =16257.018775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.080 0.920 4 C -0.117 4.117 5 H 0.124 0.876 6 C 0.527 3.473 7 O -0.578 6.578 8 N -0.720 5.720 9 C 0.130 3.870 10 C -0.114 4.114 11 C 0.059 3.941 12 N -0.540 5.540 13 C 0.050 3.950 14 C 0.187 3.813 15 N -0.614 5.614 16 C -0.270 4.270 17 H 0.063 0.937 18 C -0.047 4.047 19 N -0.931 5.931 20 Si 0.967 3.033 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.275 1.275 24 C 0.143 3.857 25 C 0.055 3.945 26 C -0.112 4.112 27 C 0.039 3.961 28 N -0.540 5.540 29 C 0.016 3.984 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.414 0.586 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.029 0.971 40 H 0.015 0.985 41 H 0.088 0.912 42 H 0.001 0.999 43 H 0.048 0.952 44 H 0.251 0.749 45 H 0.016 0.984 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.021 0.979 49 H 0.065 0.935 50 H 0.095 0.905 51 H 0.086 0.914 52 H 0.065 0.935 53 H 0.040 0.960 54 H 0.067 0.933 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.751 -10.383 19.622 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.028 4.028 3 H 0.098 0.902 4 C -0.139 4.139 5 H 0.142 0.858 6 C 0.315 3.685 7 O -0.458 6.458 8 N -0.372 5.372 9 C 0.005 3.995 10 C -0.152 4.152 11 C -0.069 4.069 12 N -0.265 5.265 13 C -0.079 4.079 14 C 0.061 3.939 15 N -0.338 5.338 16 C -0.400 4.400 17 H 0.081 0.919 18 C -0.243 4.243 19 N -0.577 5.577 20 Si 0.794 3.206 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.201 1.201 24 C 0.018 3.982 25 C -0.074 4.074 26 C -0.151 4.151 27 C -0.088 4.088 28 N -0.265 5.265 29 C -0.132 4.132 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.251 0.749 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.033 0.967 41 H 0.106 0.894 42 H 0.020 0.980 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.034 0.966 46 H 0.076 0.924 47 H 0.113 0.887 48 H 0.039 0.961 49 H 0.084 0.916 50 H 0.114 0.886 51 H 0.105 0.895 52 H 0.083 0.917 53 H 0.058 0.942 54 H 0.086 0.914 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.437 -11.228 19.738 28.033 hybrid contribution -1.053 1.534 -0.291 1.883 sum 15.384 -9.695 19.447 26.624 Atomic orbital electron populations 1.21891 0.94808 1.01651 1.01920 1.22256 0.95784 0.96420 0.88309 0.90212 1.22351 0.95302 0.99616 0.96630 0.85750 1.20640 0.84200 0.83910 0.79770 1.90684 1.61202 1.24187 1.69686 1.46027 1.35614 1.24697 1.30892 1.21137 0.88875 0.97202 0.92250 1.21638 0.99083 0.98509 0.95938 1.22024 0.96866 0.95881 0.92105 1.61892 1.43675 1.04425 1.16465 1.22611 0.97009 0.91152 0.97123 1.20564 0.92492 0.93575 0.87264 1.44369 1.31024 1.17189 1.41225 1.19430 0.94109 0.89319 1.37131 0.91907 1.25839 0.99676 0.97896 1.00890 1.70193 1.26309 1.06180 1.54980 0.85364 0.79839 0.77044 0.78327 1.20531 1.21809 1.20061 1.21136 0.97312 0.85509 0.94277 1.22462 0.93335 0.97768 0.93884 1.22501 0.99419 0.97192 0.95939 1.23259 0.91216 0.98847 0.95504 1.64667 1.27718 1.27234 1.06893 1.22552 1.01103 0.95128 0.94417 0.93789 0.91974 0.91919 0.74897 0.92735 0.91841 0.89926 0.91096 0.89543 0.95306 0.96697 0.89416 0.98041 0.93400 0.93981 0.96554 0.92359 0.88722 0.96068 0.91639 0.88613 0.89528 0.91702 0.94178 0.91441 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.37 71.98 0.60 -2.02 16 2 C 0.08 1.16 3.09 45.06 0.14 1.30 16 3 H 0.08 0.86 7.69 -2.39 -0.02 0.84 16 4 C -0.12 -1.62 3.37 -10.66 -0.04 -1.65 16 5 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 6 C 0.53 10.50 4.74 87.66 0.42 10.91 16 7 O -0.58 -16.75 14.90 -3.02 -0.05 -16.80 16 8 N -0.72 -11.65 5.16 -463.08 -2.39 -14.04 16 9 C 0.13 2.45 5.67 86.38 0.49 2.94 16 10 C -0.11 -2.21 5.26 30.59 0.16 -2.05 16 11 C 0.06 1.43 4.96 86.31 0.43 1.86 16 12 N -0.54 -17.55 4.63 -895.24 -4.14 -21.70 16 13 C 0.05 1.86 5.46 86.38 0.47 2.34 16 14 C 0.19 9.08 5.41 86.35 0.47 9.55 16 15 N -0.61 -31.52 3.02 -698.14 -2.11 -33.63 16 16 C -0.27 -15.08 9.58 84.03 0.81 -14.28 16 17 H 0.06 3.43 7.90 -2.91 -0.02 3.41 16 18 C -0.05 -2.64 4.87 84.86 0.41 -2.23 16 19 N -0.93 -55.32 11.48 21.65 0.25 -55.07 16 20 Si 0.97 44.94 29.59 68.60 2.03 46.97 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.14 6.07 6.69 86.35 0.58 6.65 16 25 C 0.05 1.85 5.62 86.39 0.49 2.34 16 26 C -0.11 -1.59 6.56 31.80 0.21 -1.38 16 27 C 0.04 0.47 6.56 86.65 0.57 1.04 16 28 N -0.54 -8.25 5.18 -884.04 -4.58 -12.83 16 29 C 0.02 0.18 9.41 127.69 1.20 1.38 16 30 H 0.04 1.08 6.94 -2.39 -0.02 1.06 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.08 7.17 -2.39 -0.02 1.06 16 33 H 0.41 4.47 8.47 -92.71 -0.79 3.69 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.41 6.40 -2.39 -0.02 1.40 16 38 H 0.09 1.85 7.97 -2.39 -0.02 1.83 16 39 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 40 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 2.78 6.16 -2.38 -0.01 2.76 16 42 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.05 2.59 6.40 -2.39 -0.02 2.58 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 47 H 0.09 2.60 7.99 -2.39 -0.02 2.58 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 1.35 6.92 -2.39 -0.02 1.34 16 50 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.06 0.55 8.00 -2.39 -0.02 0.53 16 53 H 0.04 0.34 7.99 -2.39 -0.02 0.32 16 54 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 55 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -71.86 417.14 -3.53 -75.39 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.06 Total: 14.99 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 7.40 Total: 16.70 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -12.98 Total: -137.26 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.05 Total: -16.80 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.86 -3.53 -75.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713068514.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.820 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds