Wall clock time and date at job start Tue Mar 31 2020 22:23:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46901 * 111.00033 * 2 1
4 4 C 1.46900 * 111.00442 * 123.95311 * 2 1 3
5 5 C 1.52994 * 109.47214 * 164.23809 * 4 2 1
6 6 C 1.50697 * 115.55274 * 296.49195 * 5 4 2
7 7 O 1.21285 * 119.99914 * 109.94607 * 6 5 4
8 8 N 1.34772 * 120.00120 * 289.94862 * 6 5 4
9 9 C 1.46495 * 120.00215 * 354.54159 * 8 6 5
10 10 C 1.46507 * 120.00131 * 174.54120 * 8 6 5
11 11 C 1.53006 * 109.46741 * 89.99914 * 10 8 6
12 12 N 1.46898 * 109.46962 * 180.02562 * 11 10 8
13 13 C 1.46904 * 110.99992 * 294.30180 * 12 11 10
14 14 C 1.53236 * 109.34195 * 172.74588 * 13 12 11
15 15 N 1.47085 * 108.51900 * 53.83160 * 14 13 12
16 16 C 1.36931 * 120.88309 * 128.83978 * 15 14 13
17 17 H 1.07992 * 120.00202 * 209.16729 * 16 15 14
18 18 C 1.38820 * 120.00041 * 29.16261 * 16 15 14
19 19 N 1.31619 * 119.99831 * 11.75616 * 18 16 15
20 20 Si 1.86798 * 120.00155 * 191.75447 * 18 16 15
21 21 H 1.48496 * 109.47242 * 60.00179 * 20 18 16
22 22 H 1.48505 * 109.47045 * 180.02562 * 20 18 16
23 23 H 1.48500 * 109.46917 * 299.99925 * 20 18 16
24 24 C 1.47082 * 118.23588 * 308.81101 * 15 14 13
25 25 C 1.46902 * 111.00088 * 170.00093 * 12 11 10
26 26 C 1.52995 * 117.49851 * 82.16907 * 5 4 2
27 27 C 1.53005 * 117.49824 * 150.82644 * 5 4 2
28 28 H 1.09000 * 109.46924 * 296.04426 * 1 2 3
29 29 H 1.08996 * 109.46898 * 56.04492 * 1 2 3
30 30 H 1.08999 * 109.46698 * 176.04974 * 1 2 3
31 31 H 1.08995 * 109.47258 * 189.72261 * 3 2 1
32 32 H 1.09005 * 109.47384 * 309.72586 * 3 2 1
33 33 H 1.09002 * 109.47012 * 69.72007 * 3 2 1
34 34 H 1.09005 * 109.46937 * 44.23922 * 4 2 1
35 35 H 1.08997 * 109.47131 * 284.24263 * 4 2 1
36 36 H 1.08999 * 109.47464 * 273.71894 * 9 8 6
37 37 H 1.09003 * 109.47114 * 33.71648 * 9 8 6
38 38 H 1.09000 * 109.47531 * 153.71339 * 9 8 6
39 39 H 1.09002 * 109.46785 * 330.00488 * 10 8 6
40 40 H 1.08992 * 109.47282 * 209.99888 * 10 8 6
41 41 H 1.08999 * 109.46904 * 299.99800 * 11 10 8
42 42 H 1.08994 * 109.46992 * 60.00402 * 11 10 8
43 43 H 1.09000 * 109.49119 * 292.70860 * 13 12 11
44 44 H 1.09003 * 109.49004 * 52.78643 * 13 12 11
45 45 H 1.08995 * 109.62899 * 294.12139 * 14 13 12
46 46 H 1.09002 * 109.62676 * 173.53882 * 14 13 12
47 47 H 0.97005 * 120.00155 * 180.02562 * 19 18 16
48 48 H 1.08992 * 109.63043 * 291.47705 * 24 15 14
49 49 H 1.08998 * 109.78644 * 170.99492 * 24 15 14
50 50 H 1.08997 * 109.49241 * 307.21101 * 25 12 11
51 51 H 1.08994 * 109.49092 * 67.29457 * 25 12 11
52 52 H 1.09003 * 117.50105 * 215.00223 * 26 5 4
53 53 H 1.08998 * 117.50232 * 0.02562 * 26 5 4
54 54 H 1.09004 * 117.49615 * 359.97213 * 27 5 4
55 55 H 1.08999 * 117.50322 * 144.97028 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.9956 -0.7659 1.1376
5 6 3.4743 -1.0790 0.9009
6 6 3.7707 -1.9580 -0.2867
7 8 4.3179 -1.4927 -1.2640
8 7 3.4277 -3.2611 -0.2629
9 6 2.8765 -3.8513 0.9594
10 6 3.6061 -4.0876 -1.4594
11 6 5.0002 -4.7178 -1.4406
12 7 5.1793 -5.5460 -2.6406
13 6 4.2671 -6.6974 -2.6265
14 6 4.3549 -7.4309 -3.9691
15 7 5.7647 -7.7576 -4.2316
16 6 6.1410 -9.0317 -4.5634
17 1 7.1269 -9.3884 -4.3044
18 6 5.2550 -9.8651 -5.2325
19 7 4.1510 -9.3709 -5.7515
20 14 5.6296 -11.6878 -5.3963
21 1 5.7410 -12.2936 -4.0451
22 1 4.5352 -12.3524 -6.1486
23 1 6.9106 -11.8662 -6.1260
24 6 6.7597 -6.6792 -4.1290
25 6 6.5772 -5.9754 -2.7801
26 6 4.4909 0.0118 1.2437
27 6 4.3705 -1.2290 2.1319
28 1 -0.3633 0.4512 0.9233
29 1 -0.3633 0.5740 -0.8524
30 1 -0.3633 -1.0252 -0.0708
31 1 3.0713 1.3477 -0.1735
32 1 1.5125 1.9461 -0.7904
33 1 1.7931 1.8383 0.9640
34 1 1.4384 -1.6975 1.2374
35 1 1.8898 -0.1798 2.0504
36 1 3.6918 -4.1823 1.6027
37 1 2.2786 -3.1066 1.4848
38 1 2.2490 -4.7040 0.7003
39 1 3.5000 -3.4666 -2.3489
40 1 2.8519 -4.8743 -1.4733
41 1 5.7544 -3.9311 -1.4267
42 1 5.1062 -5.3387 -0.5511
43 1 4.5504 -7.3761 -1.8220
44 1 3.2460 -6.3506 -2.4676
45 1 3.9739 -6.7884 -4.7629
46 1 3.7686 -8.3487 -3.9239
47 1 3.5317 -9.9532 -6.2188
48 1 6.6099 -5.9646 -4.9381
49 1 7.7645 -7.0971 -4.1910
50 1 7.2315 -5.1049 -2.7326
51 1 6.8283 -6.6641 -1.9735
52 1 5.3742 0.0937 0.6102
53 1 4.1063 0.9522 1.6383
54 1 3.9065 -1.1043 3.1104
55 1 5.1741 -1.9638 2.0830
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713744615.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:23:29
Heat of formation + Delta-G solvation = 23.168088 kcal
Electronic energy + Delta-G solvation = -30880.744776 eV
Core-core repulsion = 26954.224485 eV
Total energy + Delta-G solvation = -3926.520291 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.242 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-41.46496 -39.81485 -38.72778 -37.04921 -36.55332 -35.88420 -33.41353 -31.66258
-30.84751 -29.01291 -28.44817 -28.02131 -27.36043 -25.39178 -24.35855 -23.94874
-23.37011 -23.01214 -22.04533 -20.85379 -19.64097 -18.74545 -17.77397 -17.50334
-16.94976 -16.71778 -16.34684 -16.21205 -16.14966 -15.70910 -15.61412 -15.34624
-15.27186 -15.01273 -14.94361 -14.82653 -14.37713 -13.95865 -13.88528 -13.49651
-13.32070 -13.23868 -13.18457 -13.02995 -12.92900 -12.85680 -12.63838 -12.63326
-12.55778 -12.41312 -12.32531 -12.14500 -12.01938 -11.84761 -11.58317 -11.39834
-11.37457 -11.06931 -10.66011 -10.59530 -9.69725 -9.26643 -9.24526 -8.65364
-7.86654 -5.36427 1.46994 1.49232 1.56408 1.66764 1.94392 2.50600
2.58473 3.05119 3.13827 3.29478 3.54882 3.66686 3.71441 3.81899
3.93292 4.02524 4.11991 4.24675 4.27054 4.29028 4.32919 4.41959
4.45435 4.52698 4.53846 4.55406 4.60241 4.66354 4.68019 4.71228
4.75579 4.76319 4.79035 4.83152 4.91547 4.95914 4.97628 5.01758
5.02684 5.04428 5.08120 5.17905 5.19274 5.36151 5.54204 5.60515
5.69828 6.08725 6.11912 6.15662 6.22469 6.38947 6.46708 7.13802
7.26669 7.82320 8.38700 9.19831
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.022892 B = 0.002186 C = 0.002122
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1222.847716 B =12807.327999 C =13192.029082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.572 5.572
3 C 0.026 3.974
4 C 0.100 3.900
5 C -0.157 4.157
6 C 0.555 3.445
7 O -0.580 6.580
8 N -0.610 5.610
9 C 0.071 3.929
10 C 0.129 3.871
11 C 0.059 3.941
12 N -0.544 5.544
13 C 0.051 3.949
14 C 0.186 3.814
15 N -0.615 5.615
16 C -0.266 4.266
17 H 0.067 0.933
18 C -0.051 4.051
19 N -0.937 5.937
20 Si 0.974 3.026
21 H -0.276 1.276
22 H -0.292 1.292
23 H -0.276 1.276
24 C 0.145 3.855
25 C 0.059 3.941
26 C -0.152 4.152
27 C -0.134 4.134
28 H 0.039 0.961
29 H 0.066 0.934
30 H 0.068 0.932
31 H 0.061 0.939
32 H 0.063 0.937
33 H 0.041 0.959
34 H 0.092 0.908
35 H 0.069 0.931
36 H 0.066 0.934
37 H 0.093 0.907
38 H 0.081 0.919
39 H 0.059 0.941
40 H 0.090 0.910
41 H 0.059 0.941
42 H 0.038 0.962
43 H 0.023 0.977
44 H 0.085 0.915
45 H -0.005 1.005
46 H 0.062 0.938
47 H 0.251 0.749
48 H 0.011 0.989
49 H 0.062 0.938
50 H 0.083 0.917
51 H 0.027 0.973
52 H 0.079 0.921
53 H 0.119 0.881
54 H 0.135 0.865
55 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.922 19.290 23.283 31.018
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 N -0.297 5.297
3 C -0.122 4.122
4 C -0.028 4.028
5 C -0.161 4.161
6 C 0.345 3.655
7 O -0.459 6.459
8 N -0.342 5.342
9 C -0.071 4.071
10 C 0.006 3.994
11 C -0.070 4.070
12 N -0.270 5.270
13 C -0.078 4.078
14 C 0.060 3.940
15 N -0.339 5.339
16 C -0.396 4.396
17 H 0.084 0.916
18 C -0.247 4.247
19 N -0.583 5.583
20 Si 0.801 3.199
21 H -0.202 1.202
22 H -0.218 1.218
23 H -0.202 1.202
24 C 0.019 3.981
25 C -0.071 4.071
26 C -0.189 4.189
27 C -0.171 4.171
28 H 0.058 0.942
29 H 0.084 0.916
30 H 0.087 0.913
31 H 0.080 0.920
32 H 0.082 0.918
33 H 0.060 0.940
34 H 0.110 0.890
35 H 0.087 0.913
36 H 0.085 0.915
37 H 0.111 0.889
38 H 0.100 0.900
39 H 0.078 0.922
40 H 0.108 0.892
41 H 0.078 0.922
42 H 0.057 0.943
43 H 0.041 0.959
44 H 0.103 0.897
45 H 0.013 0.987
46 H 0.080 0.920
47 H 0.060 0.940
48 H 0.029 0.971
49 H 0.081 0.919
50 H 0.101 0.899
51 H 0.046 0.954
52 H 0.098 0.902
53 H 0.137 0.863
54 H 0.153 0.847
55 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -6.729 19.485 21.833 30.028
hybrid contribution 0.144 -1.102 0.353 1.166
sum -6.585 18.384 22.186 29.556
Atomic orbital electron populations
1.22377 0.85985 1.02532 1.01104 1.61783 1.08837 1.15008 1.44036
1.22445 1.00957 0.88078 1.00686 1.21711 0.90106 0.99032 0.91944
1.21315 0.95410 1.03124 0.96240 1.19960 0.76316 0.81628 0.87636
1.90678 1.43861 1.74713 1.36635 1.47819 1.63556 1.08940 1.13921
1.22171 0.99541 1.00041 0.85334 1.21265 0.96262 0.94099 0.87781
1.22258 0.98188 0.95861 0.90731 1.61795 1.05788 1.20850 1.38568
1.22654 0.96401 0.90633 0.98074 1.20641 0.85445 0.96433 0.91459
1.44375 1.03407 1.05321 1.80780 1.19498 1.00641 0.89337 1.30155
0.91558 1.25933 0.98180 1.03154 0.97396 1.70156 1.13345 1.35328
1.39489 0.85251 0.77046 0.79790 0.77765 1.20165 1.21836 1.20210
1.21098 0.92954 0.89649 0.94382 1.22414 0.88908 0.98245 0.97492
1.23059 0.99318 0.94349 1.02219 1.23248 1.00009 0.99607 0.94283
0.94204 0.91561 0.91306 0.91995 0.91835 0.94019 0.88974 0.91304
0.91512 0.88881 0.89978 0.92223 0.89203 0.92223 0.94335 0.95855
0.89711 0.98706 0.91981 0.93972 0.97054 0.91950 0.89910 0.95449
0.90248 0.86258 0.84665 0.88691
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 9.53 127.69 1.22 1.58 16
2 N -0.57 -9.85 4.85 -948.85 -4.60 -14.45 16
3 C 0.03 0.40 8.83 127.69 1.13 1.53 16
4 C 0.10 1.28 4.56 86.30 0.39 1.67 16
5 C -0.16 -2.61 0.75 -52.93 -0.04 -2.65 16
6 C 0.56 14.42 6.76 87.66 0.59 15.02 16
7 O -0.58 -21.14 16.45 -3.04 -0.05 -21.19 16
8 N -0.61 -13.81 2.87 -846.75 -2.43 -16.24 16
9 C 0.07 0.93 9.98 127.77 1.28 2.21 16
10 C 0.13 3.63 5.34 86.38 0.46 4.09 16
11 C 0.06 1.79 5.29 86.31 0.46 2.25 16
12 N -0.54 -20.43 4.63 -895.25 -4.14 -24.58 16
13 C 0.05 2.03 5.46 86.38 0.47 2.51 16
14 C 0.19 9.49 5.37 86.35 0.46 9.96 16
15 N -0.61 -32.80 3.03 -698.14 -2.12 -34.91 16
16 C -0.27 -15.14 9.64 84.04 0.81 -14.33 16
17 H 0.07 3.65 7.86 -2.91 -0.02 3.63 16
18 C -0.05 -2.94 5.05 84.86 0.43 -2.51 16
19 N -0.94 -56.63 11.02 21.65 0.24 -56.40 16
20 Si 0.97 45.47 29.57 68.60 2.03 47.49 16
21 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16
22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16
23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
24 C 0.15 6.57 6.69 86.35 0.58 7.15 16
25 C 0.06 2.22 5.62 86.38 0.49 2.71 16
26 C -0.15 -2.29 8.03 30.62 0.25 -2.04 16
27 C -0.13 -1.44 9.55 30.62 0.29 -1.15 16
28 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16
29 H 0.07 0.89 8.06 -2.39 -0.02 0.87 16
30 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16
31 H 0.06 1.14 6.04 -2.39 -0.01 1.12 16
32 H 0.06 0.97 8.02 -2.38 -0.02 0.95 16
33 H 0.04 0.46 8.00 -2.39 -0.02 0.44 16
34 H 0.09 1.00 5.77 -2.38 -0.01 0.99 16
35 H 0.07 0.58 7.91 -2.39 -0.02 0.56 16
36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
37 H 0.09 0.84 4.57 -2.39 -0.01 0.83 16
38 H 0.08 0.96 7.85 -2.39 -0.02 0.94 16
39 H 0.06 2.08 7.50 -2.39 -0.02 2.06 16
40 H 0.09 2.27 6.13 -2.39 -0.01 2.26 16
41 H 0.06 1.96 7.97 -2.39 -0.02 1.95 16
42 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16
43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16
44 H 0.08 2.92 6.16 -2.39 -0.01 2.90 16
45 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16
46 H 0.06 3.48 6.15 -2.39 -0.01 3.47 16
47 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16
48 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16
49 H 0.06 2.68 7.96 -2.39 -0.02 2.66 16
50 H 0.08 2.77 7.99 -2.39 -0.02 2.75 16
51 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
52 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16
53 H 0.12 1.30 7.43 -2.39 -0.02 1.28 16
54 H 0.14 0.62 8.14 -2.38 -0.02 0.60 16
55 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
Total: -1.00 -75.72 419.29 -0.98 -76.70
By element:
Atomic # 1 Polarization: 14.74 SS G_CDS: 0.84 Total: 15.59 kcal
Atomic # 6 Polarization: 18.74 SS G_CDS: 9.26 Total: 27.99 kcal
Atomic # 7 Polarization: -133.52 SS G_CDS: -13.06 Total: -146.58 kcal
Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.19 kcal
Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal
Total: -75.72 -0.98 -76.70 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713744615.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.867 kcal
(2) G-P(sol) polarization free energy of solvation -75.720 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.147 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.699 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.168 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds