Wall clock time and date at job start Tue Mar 31 2020 21:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47242 * 2 1 4 4 N 1.46902 * 109.46807 * 119.99786 * 2 1 3 5 5 C 1.47444 * 111.00158 * 54.15891 * 4 2 1 6 6 C 1.54316 * 107.23156 * 123.25575 * 5 4 2 7 7 C 1.55262 * 103.08891 * 22.20331 * 6 5 4 8 8 C 1.47853 * 110.99691 * 175.00073 * 4 2 1 9 9 H 1.08996 * 110.37408 * 332.57825 * 8 4 2 10 10 C 1.50702 * 110.37255 * 94.80740 * 8 4 2 11 11 O 1.21283 * 119.99905 * 358.44835 * 10 8 4 12 12 N 1.34773 * 120.00123 * 178.44564 * 10 8 4 13 13 C 1.46494 * 120.00175 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47012 * 179.97438 * 13 12 10 15 15 N 1.46905 * 109.47144 * 180.02562 * 14 13 12 16 16 C 1.46897 * 111.00004 * 190.00749 * 15 14 13 17 17 C 1.53240 * 109.33736 * 187.25443 * 16 15 14 18 18 N 1.47084 * 108.52018 * 306.16230 * 17 16 15 19 19 C 1.36936 * 120.88274 * 231.19112 * 18 17 16 20 20 H 1.08002 * 120.00012 * 30.09375 * 19 18 17 21 21 C 1.38807 * 119.99821 * 210.10387 * 19 18 17 22 22 N 1.31621 * 119.99834 * 198.73954 * 21 19 18 23 23 Si 1.86799 * 120.00350 * 18.45530 * 21 19 18 24 24 H 1.48496 * 109.47341 * 270.27978 * 23 21 19 25 25 H 1.48501 * 109.46965 * 30.28327 * 23 21 19 26 26 H 1.48503 * 109.47219 * 150.27754 * 23 21 19 27 27 C 1.47083 * 118.23420 * 51.45965 * 18 17 16 28 28 C 1.46898 * 110.99783 * 314.30381 * 15 14 13 29 29 H 1.08998 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47563 * 300.00063 * 1 2 3 31 31 H 1.08997 * 109.47238 * 60.00229 * 1 2 3 32 32 H 1.09000 * 109.47563 * 239.99937 * 2 1 3 33 33 H 1.09000 * 109.47495 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47220 * 300.00066 * 3 2 1 35 35 H 1.09000 * 109.46893 * 59.99527 * 3 2 1 36 36 H 1.08996 * 109.88644 * 242.66226 * 5 4 2 37 37 H 1.08998 * 109.88561 * 3.85422 * 5 4 2 38 38 H 1.08995 * 110.70731 * 140.66893 * 6 5 4 39 39 H 1.09002 * 110.70645 * 263.72412 * 6 5 4 40 40 H 1.08997 * 111.08911 * 206.38344 * 7 6 5 41 41 H 1.08998 * 110.93877 * 82.53138 * 7 6 5 42 42 H 0.97002 * 119.99624 * 0.02562 * 12 10 8 43 43 H 1.09008 * 109.46969 * 60.00708 * 13 12 10 44 44 H 1.08991 * 109.47462 * 300.00419 * 13 12 10 45 45 H 1.08999 * 109.46748 * 60.00798 * 14 13 12 46 46 H 1.09002 * 109.47381 * 300.00165 * 14 13 12 47 47 H 1.08990 * 109.49731 * 67.28759 * 16 15 14 48 48 H 1.09007 * 109.49005 * 307.20679 * 16 15 14 49 49 H 1.09007 * 109.62982 * 186.45740 * 17 16 15 50 50 H 1.09001 * 109.63176 * 65.87551 * 17 16 15 51 51 H 0.97005 * 120.00103 * 354.64667 * 22 21 19 52 52 H 1.09003 * 109.62333 * 68.25463 * 27 18 17 53 53 H 1.09001 * 109.62431 * 188.82944 * 27 18 17 54 54 H 1.09004 * 109.49432 * 292.70565 * 28 15 14 55 55 H 1.09001 * 109.49681 * 52.75566 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4358 -2.0422 1.3057 6 6 2.6082 -3.0433 1.3740 7 6 3.7894 -2.1679 1.8730 8 6 3.4926 -0.8172 1.1750 9 1 3.8551 -0.8335 0.1472 10 6 4.1280 0.3175 1.9364 11 8 3.4331 1.1778 2.4345 12 7 5.4684 0.3765 2.0639 13 6 6.0860 1.4799 2.8036 14 6 7.6065 1.3091 2.7987 15 7 8.2259 2.4153 3.5409 16 6 9.6836 2.4195 3.3600 17 6 10.3070 3.4681 4.2875 18 7 9.6464 4.7594 4.0436 19 6 10.3802 5.8887 3.7964 20 1 11.3407 5.8125 3.3083 21 6 9.8898 7.1314 4.1732 22 7 10.3825 8.2251 3.6316 23 14 8.5252 7.2511 5.4432 24 1 7.2076 7.2083 4.7596 25 1 8.6289 6.1118 6.3901 26 1 8.6543 8.5283 6.1897 27 6 8.1767 4.8066 4.0782 28 6 7.6371 3.7041 3.1533 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 0.8327 -2.1152 2.2107 37 1 0.8211 -2.2503 0.4300 38 1 2.3925 -3.8416 2.0841 39 1 2.8219 -3.4544 0.3874 40 1 4.7456 -2.5753 1.5447 41 1 3.7640 -2.0609 2.9574 42 1 6.0241 -0.3114 1.6653 43 1 5.7237 1.4759 3.8317 44 1 5.8247 2.4261 2.3299 45 1 7.9692 1.3129 1.7708 46 1 7.8674 0.3629 3.2727 47 1 9.9210 2.6628 2.3245 48 1 10.0832 1.4350 3.6036 49 1 11.3728 3.5564 4.0764 50 1 10.1600 3.1719 5.3262 51 1 11.1397 8.1688 3.0279 52 1 7.8289 4.6367 5.0972 53 1 7.8334 5.7803 3.7287 54 1 7.9030 3.9296 2.1205 55 1 6.5524 3.6512 3.2463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731365474.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:56 Heat of formation + Delta-G solvation = -17.795624 kcal Electronic energy + Delta-G solvation = -30643.043864 eV Core-core repulsion = 26714.747253 eV Total energy + Delta-G solvation = -3928.296611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40257 -40.11235 -39.18472 -36.95914 -35.63224 -35.17557 -33.67004 -32.10628 -31.31645 -30.20000 -29.85045 -27.93284 -27.28533 -25.00766 -24.68544 -23.89783 -22.49839 -22.33859 -21.38995 -21.09917 -20.57388 -19.40081 -18.36840 -17.71158 -17.32728 -16.76124 -16.49116 -16.20004 -16.05679 -15.88177 -15.58662 -15.50134 -15.39766 -15.28394 -14.84371 -14.59663 -14.33856 -14.17931 -14.03805 -13.79992 -13.58256 -13.28218 -13.20343 -13.01488 -12.88309 -12.68711 -12.65827 -12.41794 -12.24756 -12.15833 -12.08696 -11.91972 -11.81096 -11.75087 -11.73323 -11.62002 -11.55222 -11.24699 -10.71566 -10.65503 -10.05275 -9.43531 -9.23832 -9.07940 -8.48681 -5.59207 1.40731 1.53424 1.71927 1.72106 1.97431 2.49943 2.85701 3.06983 3.11743 3.37228 3.55787 3.63491 3.76706 3.93946 4.02765 4.04227 4.06964 4.13530 4.14694 4.18839 4.22036 4.37461 4.38440 4.41835 4.51227 4.53725 4.56770 4.66158 4.68025 4.75757 4.77792 4.85550 4.87412 4.88205 4.91773 4.94258 4.96220 4.97188 4.99054 5.04030 5.07652 5.25650 5.28492 5.31595 5.37333 5.46511 5.72888 5.94615 6.00447 6.10815 6.16850 6.23788 6.64139 6.87910 7.36921 7.52775 8.06664 8.83554 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.002260 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.962561 B =12388.643061 C =13311.809767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 C -0.134 4.134 4 N -0.530 5.530 5 C 0.038 3.962 6 C -0.133 4.133 7 C -0.115 4.115 8 C 0.058 3.942 9 H 0.094 0.906 10 C 0.515 3.485 11 O -0.559 6.559 12 N -0.718 5.718 13 C 0.125 3.875 14 C 0.055 3.945 15 N -0.536 5.536 16 C 0.056 3.944 17 C 0.142 3.858 18 N -0.625 5.625 19 C -0.328 4.328 20 H 0.033 0.967 21 C -0.071 4.071 22 N -0.958 5.958 23 Si 1.106 2.894 24 H -0.272 1.272 25 H -0.268 1.268 26 H -0.306 1.306 27 C 0.123 3.877 28 C 0.047 3.953 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.414 0.586 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.106 0.894 47 H 0.021 0.979 48 H 0.106 0.894 49 H 0.055 0.945 50 H 0.037 0.963 51 H 0.248 0.752 52 H 0.040 0.960 53 H 0.054 0.946 54 H 0.021 0.979 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.364 -30.196 -8.870 35.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 C -0.191 4.191 4 N -0.255 5.255 5 C -0.089 4.089 6 C -0.172 4.172 7 C -0.153 4.153 8 C -0.054 4.054 9 H 0.112 0.888 10 C 0.301 3.699 11 O -0.436 6.436 12 N -0.373 5.373 13 C 0.001 3.999 14 C -0.073 4.073 15 N -0.261 5.261 16 C -0.073 4.073 17 C 0.017 3.983 18 N -0.351 5.351 19 C -0.458 4.458 20 H 0.050 0.950 21 C -0.265 4.265 22 N -0.600 5.600 23 Si 0.932 3.068 24 H -0.199 1.199 25 H -0.193 1.193 26 H -0.234 1.234 27 C -0.003 4.003 28 C -0.082 4.082 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.251 0.749 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.124 0.876 47 H 0.039 0.961 48 H 0.124 0.876 49 H 0.074 0.926 50 H 0.055 0.945 51 H 0.057 0.943 52 H 0.058 0.942 53 H 0.072 0.928 54 H 0.039 0.961 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.096 -28.302 -6.835 34.820 hybrid contribution 2.224 -0.596 -2.513 3.409 sum -16.872 -28.898 -9.348 34.744 Atomic orbital electron populations 1.21910 0.93232 1.02698 1.02193 1.21804 0.96541 0.94408 0.90373 1.21785 0.99665 0.96337 1.01344 1.63084 1.03964 1.18842 1.39632 1.22946 0.97629 0.85995 1.02340 1.22804 0.93596 0.97837 1.02925 1.22745 1.00791 0.91350 1.00406 1.22499 0.89686 0.93832 0.99396 0.88824 1.20953 0.81796 0.86874 0.80259 1.90707 1.62916 1.41277 1.48719 1.45768 1.06688 1.28341 1.56508 1.21245 0.92499 0.89568 0.96615 1.22254 0.92075 0.95646 0.97292 1.61935 1.04729 1.02726 1.56725 1.22482 0.87035 1.00279 0.97504 1.21209 0.95518 0.84528 0.97055 1.44538 1.01106 1.05675 1.83787 1.20120 1.04173 0.86986 1.34530 0.94951 1.27410 1.06320 0.91148 1.01671 1.71018 1.25780 1.30320 1.32921 0.83230 0.73737 0.74797 0.75001 1.19873 1.19332 1.23403 1.21597 0.83722 0.97199 0.97739 1.22630 0.99350 0.89771 0.96491 0.91063 0.93315 0.91088 0.92919 0.94736 0.91583 0.93740 0.91139 0.90742 0.89184 0.89612 0.87291 0.91438 0.74915 0.92044 0.93129 0.93629 0.87602 0.96104 0.87569 0.92636 0.94536 0.94274 0.94184 0.92830 0.96061 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.95 71.98 0.64 -1.31 16 2 C 0.08 1.25 2.38 44.91 0.11 1.35 16 3 C -0.13 -2.82 7.93 71.98 0.57 -2.25 16 4 N -0.53 -9.27 4.29 -839.93 -3.60 -12.87 16 5 C 0.04 0.44 6.14 86.65 0.53 0.97 16 6 C -0.13 -0.95 6.94 31.82 0.22 -0.73 16 7 C -0.11 -1.07 6.46 32.02 0.21 -0.87 16 8 C 0.06 0.86 2.33 44.64 0.10 0.97 16 9 H 0.09 1.10 7.69 -2.39 -0.02 1.08 16 10 C 0.52 11.37 5.83 87.66 0.51 11.88 16 11 O -0.56 -18.04 14.53 -3.04 -0.04 -18.09 16 12 N -0.72 -12.53 5.51 -463.07 -2.55 -15.09 16 13 C 0.13 2.86 4.92 86.38 0.43 3.28 16 14 C 0.06 1.15 5.38 86.30 0.46 1.61 16 15 N -0.54 -16.00 4.78 -894.31 -4.27 -20.27 16 16 C 0.06 1.72 5.58 86.38 0.48 2.20 16 17 C 0.14 5.62 6.69 86.35 0.58 6.20 16 18 N -0.63 -30.71 2.77 -697.22 -1.93 -32.64 16 19 C -0.33 -19.25 9.92 84.03 0.83 -18.42 16 20 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 21 C -0.07 -4.29 5.25 84.86 0.45 -3.85 16 22 N -0.96 -62.39 13.70 21.65 0.30 -62.10 16 23 Si 1.11 55.49 24.68 68.60 1.69 57.18 16 24 H -0.27 -12.64 6.55 99.48 0.65 -11.99 16 25 H -0.27 -12.64 6.72 99.48 0.67 -11.97 16 26 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 27 C 0.12 5.44 4.38 86.50 0.38 5.82 16 28 C 0.05 1.68 5.06 86.54 0.44 2.12 16 29 H 0.07 0.74 6.17 -2.39 -0.01 0.73 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.70 7.97 -2.39 -0.02 0.68 16 33 H 0.03 0.79 6.21 -2.39 -0.01 0.77 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.04 1.21 7.57 -2.39 -0.02 1.19 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.67 5.94 -2.39 -0.01 0.65 16 38 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.07 0.86 8.05 -2.39 -0.02 0.85 16 42 H 0.41 4.13 8.47 -92.71 -0.79 3.34 16 43 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.05 1.39 6.18 -2.39 -0.01 1.38 16 45 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 46 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.11 2.45 8.11 -2.38 -0.02 2.43 16 49 H 0.06 2.21 7.95 -2.38 -0.02 2.20 16 50 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.25 16.23 8.73 -92.70 -0.81 15.42 16 52 H 0.04 1.75 6.92 -2.39 -0.02 1.73 16 53 H 0.05 2.60 4.86 -2.39 -0.01 2.58 16 54 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 55 H 0.09 2.93 5.73 -2.39 -0.01 2.91 16 Total: -1.00 -78.23 405.20 -3.52 -81.76 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -0.06 Total: 13.13 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.94 Total: 8.98 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -12.06 Total: -142.96 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.04 Total: -18.09 kcal Atomic # 14 Polarization: 55.49 SS G_CDS: 1.69 Total: 57.18 kcal Total: -78.23 -3.52 -81.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731365474.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.961 kcal (2) G-P(sol) polarization free energy of solvation -78.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds