Wall clock time and date at job start Tue Mar 31 2020 22:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99828 * 2 1 4 4 C 1.46897 * 111.00127 * 123.95340 * 2 1 3 5 5 C 1.53007 * 109.47093 * 66.04793 * 4 2 1 6 6 C 1.53001 * 109.46893 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.46640 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00536 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99481 * 179.97438 * 7 6 5 10 10 C 1.47021 * 125.64934 * 0.02738 * 9 7 6 11 11 C 1.54325 * 107.26856 * 181.02054 * 10 9 7 12 12 C 1.55162 * 102.94404 * 22.19678 * 11 10 9 13 13 H 1.08995 * 111.00423 * 82.56835 * 12 11 10 14 14 N 1.46899 * 111.00181 * 206.38784 * 12 11 10 15 15 C 1.46901 * 110.99791 * 298.69300 * 14 12 11 16 16 C 1.53234 * 109.33957 * 172.74995 * 15 14 12 17 17 N 1.47079 * 108.52013 * 53.83262 * 16 15 14 18 18 C 1.36940 * 120.87965 * 128.84322 * 17 16 15 19 19 H 1.08003 * 119.99704 * 209.19107 * 18 17 16 20 20 C 1.38807 * 120.00458 * 29.17897 * 18 17 16 21 21 N 1.31627 * 120.00042 * 13.15703 * 20 18 17 22 22 Si 1.86796 * 120.00342 * 193.15858 * 20 18 17 23 23 H 1.48500 * 109.47485 * 89.99730 * 22 20 18 24 24 H 1.48499 * 109.47249 * 210.00137 * 22 20 18 25 25 H 1.48499 * 109.47030 * 329.99700 * 22 20 18 26 26 C 1.47075 * 118.23921 * 308.81536 * 17 16 15 27 27 C 1.46901 * 110.99563 * 174.39785 * 14 12 11 28 28 C 1.47426 * 125.64542 * 179.71879 * 9 7 6 29 29 H 1.08998 * 109.47287 * 60.00489 * 1 2 3 30 30 H 1.08999 * 109.47228 * 299.99922 * 1 2 3 31 31 H 1.09007 * 109.46748 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47140 * 63.95404 * 3 2 1 33 33 H 1.08999 * 109.46965 * 183.96071 * 3 2 1 34 34 H 1.09006 * 109.46911 * 303.94974 * 3 2 1 35 35 H 1.09000 * 109.46779 * 186.04800 * 4 2 1 36 36 H 1.09000 * 109.47379 * 306.04677 * 4 2 1 37 37 H 1.08996 * 109.46816 * 300.00218 * 5 4 2 38 38 H 1.09000 * 109.47103 * 59.99715 * 5 4 2 39 39 H 1.09000 * 109.46904 * 299.99962 * 6 5 4 40 40 H 1.08996 * 109.46971 * 60.00021 * 6 5 4 41 41 H 1.08997 * 109.87808 * 300.43667 * 10 9 7 42 42 H 1.08997 * 109.88209 * 61.45148 * 10 9 7 43 43 H 1.09004 * 110.71627 * 140.55285 * 11 10 9 44 44 H 1.08992 * 110.72503 * 263.65136 * 11 10 9 45 45 H 1.08999 * 109.49347 * 292.71050 * 15 14 12 46 46 H 1.09010 * 109.48757 * 52.79166 * 15 14 12 47 47 H 1.09004 * 109.63109 * 294.12484 * 16 15 14 48 48 H 1.09000 * 109.63054 * 173.54446 * 16 15 14 49 49 H 0.96994 * 120.00335 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.62861 * 291.47685 * 26 17 16 51 51 H 1.08997 * 109.79002 * 170.99567 * 26 17 16 52 52 H 1.08994 * 109.49607 * 307.20972 * 27 14 12 53 53 H 1.09000 * 109.49213 * 67.29397 * 27 14 12 54 54 H 1.08995 * 110.36710 * 274.74807 * 28 9 7 55 55 H 1.09007 * 110.36456 * 37.06889 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2427 0.9703 6 6 2.1804 -3.0405 2.1548 7 6 1.8214 -4.4948 1.9903 8 8 1.1892 -4.8576 1.0210 9 7 2.2038 -5.3926 2.9201 10 6 2.9707 -5.0914 4.1377 11 6 3.1952 -6.4258 4.8796 12 6 3.0316 -7.4811 3.7539 13 1 3.9556 -7.5938 3.1868 14 7 2.5925 -8.7715 4.3016 15 6 3.5819 -9.3064 5.2466 16 6 3.0097 -10.5535 5.9286 17 7 2.5712 -11.4956 4.8878 18 6 2.9763 -12.8036 4.9078 19 1 3.0722 -13.3534 3.9831 20 6 3.2639 -13.4227 6.1163 21 7 2.9067 -12.8542 7.2485 22 14 4.1579 -15.0627 6.1362 23 1 5.6230 -14.8273 6.1924 24 1 3.7357 -15.8423 7.3275 25 1 3.8256 -15.8226 4.9044 26 6 1.6856 -10.9958 3.8252 27 6 2.3099 -9.7311 3.2259 28 6 1.9168 -6.8383 2.8877 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.7044 1.8723 0.9232 33 1 3.0827 1.3433 -0.0710 34 1 1.5898 1.9163 -0.8525 35 1 3.0797 -0.6610 1.1755 36 1 1.5612 -0.3872 2.0628 37 1 0.5473 -2.3475 0.9322 38 1 2.0658 -2.6214 0.0451 39 1 3.2647 -2.9355 2.1923 40 1 1.7465 -2.6619 3.0802 41 1 3.9307 -4.6493 3.8712 42 1 2.4085 -4.4036 4.7693 43 1 4.1984 -6.4671 5.3039 44 1 2.4435 -6.5667 5.6561 45 1 4.4923 -9.5712 4.7088 46 1 3.8102 -8.5522 5.9998 47 1 2.1595 -10.2733 6.5505 48 1 3.7791 -11.0199 6.5440 49 1 3.1080 -13.2867 8.0930 50 1 0.7081 -10.7580 4.2449 51 1 1.5763 -11.7533 3.0492 52 1 1.6157 -9.2852 2.5137 53 1 3.2380 -9.9901 2.7164 54 1 0.9356 -7.0400 3.3173 55 1 1.9682 -7.2124 1.8651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733757368.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:47 Heat of formation + Delta-G solvation = -18.029647 kcal Electronic energy + Delta-G solvation = -29834.456868 eV Core-core repulsion = 25906.150109 eV Total energy + Delta-G solvation = -3928.306759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.26826 -39.89803 -38.62155 -38.03575 -35.81185 -34.25074 -33.36962 -31.82628 -31.56713 -29.88255 -28.61093 -28.43907 -27.39171 -25.23536 -24.47750 -24.18449 -23.13255 -21.74998 -21.53126 -20.81825 -20.07160 -18.82166 -18.14975 -17.64859 -16.97591 -16.83585 -16.60067 -16.09959 -15.86449 -15.69502 -15.58760 -15.37857 -15.24671 -15.20094 -14.93626 -14.73934 -14.52055 -13.96181 -13.72931 -13.62194 -13.31970 -13.28111 -13.12121 -12.95304 -12.82775 -12.69908 -12.59178 -12.53877 -12.51800 -12.30258 -12.22505 -12.14563 -12.01352 -11.88347 -11.81004 -11.53445 -11.44108 -11.37184 -10.91531 -10.59431 -9.68235 -9.32670 -9.28935 -8.64905 -7.87491 -5.35994 1.47058 1.47313 1.56799 1.62060 1.89640 2.50137 2.94583 3.05261 3.28549 3.34902 3.67050 3.71112 3.75569 3.97507 4.07454 4.10834 4.20749 4.25534 4.32078 4.32838 4.39213 4.42357 4.50302 4.53361 4.56097 4.59700 4.61196 4.66629 4.68506 4.71488 4.75400 4.79386 4.83096 4.87691 4.91995 5.01811 5.02657 5.03708 5.03904 5.17601 5.19792 5.20860 5.27654 5.37280 5.38145 5.61113 5.71177 6.08641 6.12971 6.13576 6.24161 6.38932 6.52975 7.13827 7.14502 7.83277 8.38310 9.18871 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.041159 B = 0.001708 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.126447 B =16386.777340 C =16739.307173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.570 5.570 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.096 4.096 6 C -0.122 4.122 7 C 0.520 3.480 8 O -0.592 6.592 9 N -0.620 5.620 10 C 0.104 3.896 11 C -0.120 4.120 12 C 0.071 3.929 13 H 0.051 0.949 14 N -0.528 5.528 15 C 0.055 3.945 16 C 0.186 3.814 17 N -0.614 5.614 18 C -0.267 4.267 19 H 0.064 0.936 20 C -0.047 4.047 21 N -0.934 5.934 22 Si 0.970 3.030 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.271 1.271 26 C 0.145 3.855 27 C 0.055 3.945 28 C 0.120 3.880 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.018 0.982 46 H 0.092 0.908 47 H 0.000 1.000 48 H 0.057 0.943 49 H 0.251 0.749 50 H 0.016 0.984 51 H 0.057 0.943 52 H 0.084 0.916 53 H 0.023 0.977 54 H 0.066 0.934 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 29.134 -7.736 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.294 5.294 3 C -0.123 4.123 4 C -0.068 4.068 5 C -0.135 4.135 6 C -0.162 4.162 7 C 0.311 3.689 8 O -0.473 6.473 9 N -0.354 5.354 10 C -0.017 4.017 11 C -0.158 4.158 12 C -0.038 4.038 13 H 0.069 0.931 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.060 3.940 17 N -0.338 5.338 18 C -0.397 4.397 19 H 0.081 0.919 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.798 3.202 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.196 1.196 26 C 0.020 3.980 27 C -0.075 4.075 28 C -0.004 4.004 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.036 0.964 46 H 0.110 0.890 47 H 0.018 0.982 48 H 0.076 0.924 49 H 0.060 0.940 50 H 0.034 0.966 51 H 0.075 0.925 52 H 0.102 0.898 53 H 0.041 0.959 54 H 0.084 0.916 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.208 28.794 -8.323 29.997 hybrid contribution 0.498 -1.301 0.439 1.461 sum 1.706 27.493 -7.884 28.652 Atomic orbital electron populations 1.22446 0.87209 1.02083 1.01064 1.61939 1.08540 1.14943 1.43971 1.22409 1.01142 0.87823 1.00939 1.22125 1.00957 0.92297 0.91444 1.21254 1.00813 0.93988 0.97434 1.21610 1.04836 0.88103 1.01603 1.21153 0.78090 0.89119 0.80561 1.90698 1.42558 1.81763 1.32243 1.48616 1.55300 1.07626 1.23821 1.22281 0.97047 0.97754 0.84662 1.22719 1.04170 0.91864 0.97014 1.22788 0.95415 0.89626 0.96010 0.93094 1.61931 1.44202 1.02708 1.16444 1.22588 0.92053 0.97458 0.95334 1.20639 0.96454 0.87232 0.89645 1.44363 1.54293 1.06664 1.28494 1.19511 1.39275 0.88781 0.92131 0.91869 1.25843 1.01777 1.01239 0.95409 1.70152 1.49716 1.41008 0.97139 0.85239 0.78328 0.79644 0.77033 1.21013 1.21967 1.19603 1.21083 0.92183 0.93786 0.90993 1.22449 0.99038 0.93236 0.92748 1.22044 0.98465 0.80575 0.99286 0.90958 0.95047 0.91893 0.95099 0.90677 0.91044 0.89369 0.93658 0.92832 0.92672 0.86162 0.86418 0.88615 0.88648 0.88311 0.89861 0.96359 0.89009 0.98172 0.92420 0.93982 0.96641 0.92464 0.89795 0.95913 0.91557 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.40 127.69 1.20 1.47 16 2 N -0.57 -8.03 5.02 -948.83 -4.76 -12.79 16 3 C 0.02 0.24 9.57 127.69 1.22 1.47 16 4 C 0.06 0.69 4.96 86.31 0.43 1.12 16 5 C -0.10 -1.53 4.43 30.60 0.14 -1.39 16 6 C -0.12 -1.53 4.89 29.85 0.15 -1.39 16 7 C 0.52 11.79 7.85 87.66 0.69 12.48 16 8 O -0.59 -19.31 16.24 -3.01 -0.05 -19.36 16 9 N -0.62 -12.90 3.33 -811.34 -2.70 -15.60 16 10 C 0.10 1.36 6.48 86.73 0.56 1.92 16 11 C -0.12 -2.12 5.30 31.78 0.17 -1.95 16 12 C 0.07 1.77 2.73 46.39 0.13 1.89 16 13 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 14 N -0.53 -17.30 4.53 -861.45 -3.90 -21.20 16 15 C 0.05 1.98 5.48 86.38 0.47 2.46 16 16 C 0.19 8.97 5.38 86.35 0.46 9.44 16 17 N -0.61 -31.53 3.03 -698.15 -2.12 -33.65 16 18 C -0.27 -14.90 9.63 84.03 0.81 -14.09 16 19 H 0.06 3.46 7.86 -2.91 -0.02 3.44 16 20 C -0.05 -2.64 5.01 84.86 0.43 -2.21 16 21 N -0.93 -55.10 11.11 21.65 0.24 -54.86 16 22 Si 0.97 44.92 29.57 68.60 2.03 46.95 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C 0.15 6.29 6.69 86.35 0.58 6.86 16 27 C 0.05 1.93 5.48 86.38 0.47 2.40 16 28 C 0.12 3.09 5.37 86.93 0.47 3.56 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.97 6.30 -2.38 -0.02 0.95 16 32 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 34 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.09 0.80 8.06 -2.39 -0.02 0.78 16 36 H 0.05 0.44 8.12 -2.39 -0.02 0.42 16 37 H 0.05 1.04 6.43 -2.39 -0.02 1.02 16 38 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 1.44 7.94 -2.38 -0.02 1.42 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.09 2.79 6.84 -2.38 -0.02 2.77 16 47 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.06 3.11 6.20 -2.39 -0.01 3.10 16 49 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 50 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 52 H 0.08 2.61 6.82 -2.39 -0.02 2.59 16 53 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 54 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 55 H 0.06 1.67 7.73 -2.38 -0.02 1.65 16 Total: -1.00 -72.69 419.70 -2.06 -74.75 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.82 Total: 11.74 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 8.37 Total: 24.02 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -13.23 Total: -138.10 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.69 -2.06 -74.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733757368.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.720 kcal (2) G-P(sol) polarization free energy of solvation -72.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds