Wall clock time and date at job start Tue Mar 31 2020 22:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46795 * 2 1 4 4 C 1.36737 * 127.13835 * 85.38393 * 3 2 1 5 5 C 1.50699 * 126.35083 * 0.04375 * 4 3 2 6 6 C 1.53001 * 109.46672 * 95.78459 * 5 4 3 7 7 H 1.08995 * 109.47605 * 54.70097 * 6 5 4 8 8 O 1.42906 * 109.47002 * 294.70282 * 6 5 4 9 9 C 1.50703 * 109.46931 * 174.70478 * 6 5 4 10 10 H 1.08003 * 120.00171 * 359.97438 * 9 6 5 11 11 C 1.37874 * 119.99793 * 179.97438 * 9 6 5 12 12 N 1.31519 * 119.99725 * 179.97438 * 11 9 6 13 13 Si 1.86796 * 120.00229 * 0.02562 * 11 9 6 14 14 H 1.48501 * 109.47311 * 89.99706 * 13 11 9 15 15 H 1.48504 * 109.47252 * 209.99783 * 13 11 9 16 16 H 1.48497 * 109.47322 * 329.99528 * 13 11 9 17 17 N 1.30295 * 107.30109 * 180.02562 * 4 3 2 18 18 N 1.28521 * 110.05748 * 359.72399 * 17 4 3 19 19 C 1.31217 * 109.85979 * 0.45423 * 18 17 4 20 20 N 1.38576 * 126.47296 * 179.82536 * 19 18 17 21 21 C 1.46904 * 111.00121 * 106.84501 * 20 19 18 22 22 C 1.46893 * 111.00295 * 342.88444 * 20 19 18 23 23 C 1.52998 * 109.47716 * 189.99807 * 22 20 19 24 24 H 1.08995 * 109.47376 * 305.00691 * 23 22 20 25 25 C 1.53001 * 109.46650 * 65.00311 * 23 22 20 26 26 C 1.52996 * 109.47632 * 185.00028 * 23 22 20 27 27 C 1.53001 * 109.46872 * 60.00419 * 26 23 22 28 28 C 1.53002 * 109.47172 * 180.02562 * 26 23 22 29 29 C 1.53001 * 109.47116 * 300.00373 * 26 23 22 30 30 H 1.09001 * 109.47128 * 304.92302 * 1 2 3 31 31 H 1.08995 * 109.46903 * 64.92545 * 1 2 3 32 32 H 1.09003 * 109.46828 * 184.92340 * 1 2 3 33 33 H 1.08996 * 109.46666 * 239.99283 * 2 1 3 34 34 H 1.09004 * 109.46744 * 119.99950 * 2 1 3 35 35 H 1.08999 * 109.47352 * 215.78253 * 5 4 3 36 36 H 1.08999 * 109.47133 * 335.78866 * 5 4 3 37 37 H 0.96696 * 113.99984 * 301.39256 * 8 6 5 38 38 H 0.97005 * 119.99798 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.46631 * 289.83090 * 21 20 19 40 40 H 1.09002 * 109.47381 * 49.83095 * 21 20 19 41 41 H 1.09004 * 109.47121 * 169.83315 * 21 20 19 42 42 H 1.09001 * 109.47385 * 310.00955 * 22 20 19 43 43 H 1.09009 * 109.46911 * 70.00030 * 22 20 19 44 44 H 1.09003 * 109.47415 * 300.00465 * 25 23 22 45 45 H 1.09004 * 109.47179 * 60.00124 * 25 23 22 46 46 H 1.08999 * 109.47711 * 180.02562 * 25 23 22 47 47 H 1.09004 * 109.47179 * 60.00057 * 27 26 23 48 48 H 1.09004 * 109.46979 * 180.02562 * 27 26 23 49 49 H 1.09004 * 109.47015 * 300.00061 * 27 26 23 50 50 H 1.08995 * 109.46853 * 60.00347 * 28 26 23 51 51 H 1.09004 * 109.46611 * 180.02562 * 28 26 23 52 52 H 1.08999 * 109.46672 * 299.99834 * 28 26 23 53 53 H 1.08999 * 109.46806 * 60.00421 * 29 26 23 54 54 H 1.09004 * 109.46840 * 179.97438 * 29 26 23 55 55 H 1.08995 * 109.47612 * 300.00083 * 29 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2108 2.1888 1.0865 5 6 1.9593 1.8235 2.5267 6 6 3.2665 1.3564 3.1701 7 1 4.0303 2.1229 3.0388 8 8 3.6968 0.1439 2.5482 9 6 3.0444 1.1153 4.6410 10 1 2.0685 1.2792 5.0738 11 6 4.0870 0.6855 5.4342 12 7 3.8932 0.4755 6.7180 13 14 5.7749 0.4027 4.6859 14 1 6.5650 1.6580 4.7579 15 1 6.4770 -0.6679 5.4384 16 1 5.6249 -0.0070 3.2665 17 7 2.6523 3.3327 0.6457 18 7 2.7566 3.3011 -0.6348 19 6 2.3749 2.1289 -1.0844 20 7 2.3454 1.7245 -2.4095 21 6 3.4279 0.7731 -2.6939 22 6 2.4089 2.8801 -3.3141 23 6 2.1250 2.4231 -4.7463 24 1 2.8135 1.6221 -5.0154 25 6 0.6860 1.9124 -4.8427 26 6 2.3133 3.6009 -5.7045 27 6 3.7523 4.1116 -5.6081 28 6 2.0287 3.1439 -7.1366 29 6 1.3467 4.7252 -5.3268 30 1 -0.3633 0.5883 0.8426 31 1 -0.3633 0.4355 -0.9308 32 1 -0.3633 -1.0239 0.0882 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.5818 2.6947 3.0621 36 1 1.2236 1.0206 2.5748 37 1 3.0557 -0.5775 2.6074 38 1 4.6266 0.1727 7.2760 39 1 4.3851 1.2941 -2.6700 40 1 3.4250 -0.0161 -1.9420 41 1 3.2771 0.3354 -3.6807 42 1 1.6650 3.6180 -3.0138 43 1 3.4027 3.3256 -3.2652 44 1 0.5517 1.0732 -4.1601 45 1 -0.0027 2.7133 -4.5736 46 1 0.4836 1.5863 -5.8629 47 1 4.4410 3.3106 -5.8772 48 1 3.8864 4.9511 -6.2904 49 1 3.9547 4.4373 -4.5877 50 1 1.0034 2.7803 -7.2050 51 1 2.1633 3.9830 -7.8192 52 1 2.7171 2.3428 -7.4059 53 1 1.5492 5.0509 -4.3065 54 1 1.4813 5.5645 -6.0092 55 1 0.3216 4.3614 -5.3954 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772194667.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:35 Heat of formation + Delta-G solvation = 0.384381 kcal Electronic energy + Delta-G solvation = -31591.237685 eV Core-core repulsion = 27663.729419 eV Total energy + Delta-G solvation = -3927.508266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.98510 -40.29243 -38.42202 -37.69542 -36.49690 -34.44119 -33.18638 -32.01091 -31.30708 -30.08162 -29.15549 -28.21970 -27.94569 -26.95699 -25.89932 -24.78745 -23.55758 -22.96903 -21.51833 -21.35180 -19.46036 -19.06631 -18.04341 -17.65786 -17.16814 -16.89369 -16.49460 -16.26833 -15.98101 -15.75135 -15.49319 -15.32021 -14.97330 -14.88411 -14.64203 -14.52261 -14.31802 -14.00584 -13.80503 -13.66711 -13.40148 -13.15816 -12.99803 -12.90686 -12.84646 -12.75277 -12.67787 -12.62211 -12.54804 -12.33599 -12.15511 -12.10955 -12.03080 -11.96488 -11.55540 -11.27467 -11.22878 -11.19330 -11.15115 -11.01582 -10.85755 -10.66573 -10.19980 -9.31808 -8.36004 -6.49784 0.80719 1.29912 1.37559 1.43201 1.70499 1.81720 2.41266 2.67162 3.01314 3.40577 3.67672 3.73822 3.79649 3.89076 3.94844 4.00367 4.00604 4.09087 4.14373 4.30548 4.35433 4.38434 4.41183 4.50440 4.54985 4.59428 4.65674 4.66332 4.76209 4.80678 4.83983 4.86498 4.86983 4.92924 4.95930 4.97879 5.09825 5.11040 5.15214 5.17289 5.20943 5.24520 5.28424 5.31678 5.40786 5.44208 5.45719 5.56500 5.59810 5.68100 5.73782 6.07556 6.25067 6.62780 7.14828 7.32182 7.78031 8.77458 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.002702 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.615932 B =10361.521836 C =10703.363951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 N -0.460 5.460 4 C 0.205 3.795 5 C -0.038 4.038 6 C 0.216 3.784 7 H 0.038 0.962 8 O -0.579 6.579 9 C -0.557 4.557 10 H 0.051 0.949 11 C 0.036 3.964 12 N -0.933 5.933 13 Si 0.930 3.070 14 H -0.296 1.296 15 H -0.294 1.294 16 H -0.208 1.208 17 N -0.337 5.337 18 N -0.361 5.361 19 C 0.348 3.652 20 N -0.443 5.443 21 C 0.021 3.979 22 C 0.079 3.921 23 C -0.068 4.068 24 H 0.084 0.916 25 C -0.139 4.139 26 C -0.060 4.060 27 C -0.147 4.147 28 C -0.137 4.137 29 C -0.147 4.147 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.369 0.631 38 H 0.267 0.733 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.042 0.958 50 H 0.064 0.936 51 H 0.057 0.943 52 H 0.060 0.940 53 H 0.040 0.960 54 H 0.058 0.942 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -2.920 -29.920 30.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.023 4.023 3 N -0.154 5.154 4 C -0.064 4.064 5 C -0.078 4.078 6 C 0.157 3.843 7 H 0.056 0.944 8 O -0.387 6.387 9 C -0.595 4.595 10 H 0.069 0.931 11 C -0.164 4.164 12 N -0.572 5.572 13 Si 0.755 3.245 14 H -0.224 1.224 15 H -0.221 1.221 16 H -0.130 1.130 17 N -0.176 5.176 18 N -0.205 5.205 19 C -0.010 4.010 20 N -0.168 5.168 21 C -0.125 4.125 22 C -0.047 4.047 23 C -0.087 4.087 24 H 0.102 0.898 25 C -0.197 4.197 26 C -0.060 4.060 27 C -0.204 4.204 28 C -0.194 4.194 29 C -0.204 4.204 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.217 0.783 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.083 0.917 51 H 0.076 0.924 52 H 0.079 0.921 53 H 0.059 0.941 54 H 0.077 0.923 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.313 -1.469 -30.019 30.711 hybrid contribution 0.628 -0.778 1.087 1.477 sum -5.685 -2.247 -28.932 29.571 Atomic orbital electron populations 1.22088 0.92574 1.04602 1.02351 1.22254 0.96769 0.77210 1.06115 1.46345 1.49491 1.14689 1.04856 1.24945 1.01507 0.87543 0.92448 1.20653 1.00284 1.03228 0.83672 1.19399 0.91275 0.84085 0.89587 0.94446 1.86685 1.48236 1.23366 1.80400 1.21699 0.97697 1.46763 0.93343 0.93069 1.25693 1.02837 0.93324 0.94590 1.70054 1.34042 1.46552 1.06554 0.86126 0.78875 0.77033 0.82447 1.22359 1.22071 1.12964 1.73876 1.19769 1.20569 1.03431 1.74421 1.22916 1.19546 1.03643 1.22786 1.00219 0.89140 0.88829 1.58899 1.45572 1.17161 0.95119 1.22709 0.90317 0.94839 1.04664 1.22260 1.01062 0.89664 0.91735 1.21172 0.98914 0.97702 0.90920 0.89784 1.21821 0.94764 1.00999 1.02067 1.20500 0.95248 0.94524 0.95764 1.21968 0.95837 1.01345 1.01238 1.21874 1.02189 1.01353 0.94020 1.21988 0.99532 0.98141 1.00716 0.93192 0.92103 0.87641 0.86782 0.87896 0.89064 0.87973 0.78272 0.92405 0.95187 0.90955 0.86413 0.91670 0.93933 0.92363 0.93476 0.91258 0.92097 0.92179 0.93882 0.91733 0.92425 0.92101 0.94086 0.92305 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.24 71.98 0.74 -1.96 16 2 C 0.10 1.99 6.34 86.38 0.55 2.53 16 3 N -0.46 -13.72 2.81 -514.85 -1.45 -15.17 16 4 C 0.20 7.62 7.10 137.64 0.98 8.60 16 5 C -0.04 -1.43 5.17 29.85 0.15 -1.27 16 6 C 0.22 9.63 2.30 29.85 0.07 9.69 16 7 H 0.04 1.89 7.57 -2.39 -0.02 1.87 16 8 O -0.58 -23.25 9.52 -148.98 -1.42 -24.67 16 9 C -0.56 -29.78 9.35 25.60 0.24 -29.55 16 10 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 11 C 0.04 2.04 5.47 84.65 0.46 2.50 16 12 N -0.93 -56.46 13.96 21.45 0.30 -56.16 16 13 Si 0.93 45.07 26.99 68.60 1.85 46.92 16 14 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 15 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 16 H -0.21 -9.55 5.31 99.48 0.53 -9.03 16 17 N -0.34 -14.48 12.18 -49.54 -0.60 -15.08 16 18 N -0.36 -14.15 11.43 -58.01 -0.66 -14.81 16 19 C 0.35 10.85 6.85 260.11 1.78 12.63 16 20 N -0.44 -9.98 4.21 -730.91 -3.08 -13.05 16 21 C 0.02 0.38 8.97 127.69 1.15 1.53 16 22 C 0.08 1.69 3.04 86.30 0.26 1.96 16 23 C -0.07 -0.97 1.67 -10.80 -0.02 -0.99 16 24 H 0.08 1.02 6.47 -2.39 -0.02 1.01 16 25 C -0.14 -1.84 8.37 71.98 0.60 -1.24 16 26 C -0.06 -0.79 0.57 -52.18 -0.03 -0.82 16 27 C -0.15 -2.12 8.13 71.98 0.59 -1.53 16 28 C -0.14 -1.36 8.12 71.98 0.58 -0.77 16 29 C -0.15 -2.19 7.77 71.98 0.56 -1.64 16 30 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.83 6.27 -2.39 -0.01 1.82 16 34 H 0.10 2.05 6.47 -2.38 -0.02 2.03 16 35 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.10 3.22 7.72 -2.39 -0.02 3.20 16 37 H 0.37 12.00 7.97 -74.06 -0.59 11.41 16 38 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 39 H 0.03 0.62 8.06 -2.39 -0.02 0.60 16 40 H 0.07 1.29 6.28 -2.39 -0.01 1.27 16 41 H 0.12 1.34 6.67 -2.38 -0.02 1.33 16 42 H 0.06 1.67 6.57 -2.39 -0.02 1.65 16 43 H 0.04 1.04 6.09 -2.38 -0.01 1.03 16 44 H 0.06 0.84 7.75 -2.39 -0.02 0.82 16 45 H 0.05 0.71 6.43 -2.38 -0.02 0.69 16 46 H 0.07 0.70 6.43 -2.39 -0.02 0.69 16 47 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 48 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.04 0.78 6.32 -2.38 -0.02 0.77 16 50 H 0.06 0.58 6.43 -2.39 -0.02 0.57 16 51 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 52 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 53 H 0.04 0.77 6.54 -2.39 -0.02 0.75 16 54 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 55 H 0.06 0.88 6.43 -2.39 -0.02 0.86 16 Total: -1.00 -72.58 412.08 3.71 -68.87 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.11 Total: 23.47 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 8.66 Total: -0.31 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -5.49 Total: -114.28 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -1.42 Total: -24.67 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.85 Total: 46.92 kcal Total: -72.58 3.71 -68.87 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772194667.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.251 kcal (2) G-P(sol) polarization free energy of solvation -72.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds