Wall clock time and date at job start Tue Mar 31 2020 22:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46949 * 2 1 4 4 C 1.36743 * 127.13504 * 85.02540 * 3 2 1 5 5 C 1.50698 * 126.34662 * 0.04374 * 4 3 2 6 6 C 1.53002 * 109.46778 * 95.89999 * 5 4 3 7 7 H 1.09008 * 109.47325 * 54.28476 * 6 5 4 8 8 O 1.42901 * 109.47634 * 294.28306 * 6 5 4 9 9 C 1.50704 * 109.47268 * 174.28167 * 6 5 4 10 10 H 1.07994 * 119.99996 * 359.97438 * 9 6 5 11 11 C 1.37875 * 120.00228 * 180.02562 * 9 6 5 12 12 N 1.31508 * 120.00315 * 180.02562 * 11 9 6 13 13 Si 1.86807 * 119.99887 * 359.97438 * 11 9 6 14 14 H 1.48498 * 109.46870 * 90.00082 * 13 11 9 15 15 H 1.48501 * 109.47131 * 210.00145 * 13 11 9 16 16 H 1.48494 * 109.47205 * 330.00263 * 13 11 9 17 17 N 1.30287 * 107.30704 * 180.02562 * 4 3 2 18 18 N 1.28533 * 110.05308 * 359.72565 * 17 4 3 19 19 C 1.31220 * 109.86058 * 0.45131 * 18 17 4 20 20 N 1.38569 * 126.47409 * 179.82603 * 19 18 17 21 21 C 1.46903 * 111.00094 * 105.73459 * 20 19 18 22 22 C 1.46898 * 111.00091 * 341.77554 * 20 19 18 23 23 C 1.52999 * 109.47074 * 288.03222 * 22 20 19 24 24 H 1.09003 * 109.46992 * 55.33694 * 23 22 20 25 25 C 1.52999 * 109.47587 * 295.33259 * 23 22 20 26 26 C 1.53000 * 109.47009 * 175.33208 * 23 22 20 27 27 C 1.53006 * 109.47210 * 60.00232 * 26 23 22 28 28 C 1.53003 * 109.47474 * 180.02562 * 26 23 22 29 29 C 1.53008 * 109.47375 * 300.00331 * 26 23 22 30 30 H 1.09008 * 109.46703 * 304.97002 * 1 2 3 31 31 H 1.08999 * 109.47312 * 64.96508 * 1 2 3 32 32 H 1.08993 * 109.46998 * 184.97194 * 1 2 3 33 33 H 1.09000 * 109.46664 * 240.00689 * 2 1 3 34 34 H 1.08997 * 109.46979 * 120.00748 * 2 1 3 35 35 H 1.08996 * 109.47836 * 215.89828 * 5 4 3 36 36 H 1.08999 * 109.47452 * 335.90344 * 5 4 3 37 37 H 0.96699 * 113.99543 * 303.85795 * 8 6 5 38 38 H 0.97001 * 120.00441 * 180.02562 * 12 11 9 39 39 H 1.08995 * 109.46971 * 293.38356 * 21 20 19 40 40 H 1.08997 * 109.47250 * 53.38639 * 21 20 19 41 41 H 1.09004 * 109.47037 * 173.38998 * 21 20 19 42 42 H 1.09003 * 109.47369 * 168.03398 * 22 20 19 43 43 H 1.08997 * 109.47124 * 48.03679 * 22 20 19 44 44 H 1.09000 * 109.47120 * 183.86349 * 25 23 22 45 45 H 1.08994 * 109.47037 * 303.86961 * 25 23 22 46 46 H 1.08998 * 109.46905 * 63.86499 * 25 23 22 47 47 H 1.08999 * 109.46934 * 59.99926 * 27 26 23 48 48 H 1.08993 * 109.46915 * 179.97438 * 27 26 23 49 49 H 1.08994 * 109.46601 * 300.00077 * 27 26 23 50 50 H 1.09000 * 109.46545 * 59.99938 * 28 26 23 51 51 H 1.08999 * 109.47345 * 179.97438 * 28 26 23 52 52 H 1.08999 * 109.46983 * 300.00266 * 28 26 23 53 53 H 1.09001 * 109.46690 * 59.99743 * 29 26 23 54 54 H 1.08997 * 109.46976 * 180.02562 * 29 26 23 55 55 H 1.08999 * 109.46502 * 299.99694 * 29 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2044 2.1910 1.0860 5 6 1.9443 1.8285 2.5255 6 6 3.2483 1.3655 3.1783 7 1 4.0136 2.1300 3.0437 8 8 3.6799 0.1472 2.5688 9 6 3.0198 1.1373 4.6503 10 1 2.0424 1.3060 5.0776 11 6 4.0587 0.7140 5.4518 12 7 3.8592 0.5144 6.7362 13 14 5.7496 0.4228 4.7129 14 1 6.5404 1.6781 4.7764 15 1 6.4476 -0.6413 5.4782 16 1 5.6048 0.0001 3.2968 17 7 2.6485 3.3340 0.6457 18 7 2.7604 3.2998 -0.6343 19 6 2.3814 2.1267 -1.0837 20 7 2.3597 1.7197 -2.4081 21 6 3.4598 0.7880 -2.6907 22 6 2.4021 2.8749 -3.3146 23 6 1.0587 3.6059 -3.2723 24 1 0.8242 3.8758 -2.2426 25 6 -0.0374 2.6910 -3.8220 26 6 1.1407 4.8732 -4.1256 27 6 1.4699 4.4945 -5.5710 28 6 -0.2025 5.6047 -4.0828 29 6 2.2369 5.7883 -3.5758 30 1 -0.3633 0.5891 0.8422 31 1 -0.3634 0.4349 -0.9311 32 1 -0.3633 -1.0237 0.0891 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.5618 2.7002 3.0564 36 1 1.2099 1.0244 2.5707 37 1 3.0228 -0.5616 2.5983 38 1 4.5902 0.2170 7.3002 39 1 4.4113 1.3128 -2.6054 40 1 3.4327 -0.0338 -1.9753 41 1 3.3516 0.3939 -3.7012 42 1 2.5975 2.5324 -4.3308 43 1 3.1952 3.5537 -3.0013 44 1 -0.9815 3.2348 -3.8559 45 1 0.2309 2.3658 -4.8271 46 1 -0.1427 1.8205 -3.1746 47 1 0.6890 3.8427 -5.9626 48 1 1.5278 5.3973 -6.1789 49 1 2.4269 3.9737 -5.6011 50 1 -0.4366 5.8745 -3.0530 51 1 -0.1440 6.5078 -4.6903 52 1 -0.9837 4.9530 -4.4742 53 1 3.1939 5.2674 -3.6060 54 1 2.2949 6.6913 -4.1835 55 1 2.0022 6.0581 -2.5462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772194669.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:38 Heat of formation + Delta-G solvation = 1.421654 kcal Electronic energy + Delta-G solvation = -32044.871428 eV Core-core repulsion = 28117.408141 eV Total energy + Delta-G solvation = -3927.463287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.242 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.95784 -40.17611 -38.41460 -37.70886 -36.47045 -34.44876 -33.10143 -32.09800 -31.33995 -30.09834 -29.17327 -28.16338 -27.76562 -26.88487 -25.81708 -24.72690 -23.66035 -23.15724 -21.40275 -21.37851 -19.46278 -19.11079 -18.01982 -17.60826 -16.90789 -16.85698 -16.66740 -16.19926 -16.04292 -15.78976 -15.42836 -15.19512 -14.93698 -14.85999 -14.61272 -14.53261 -14.34517 -13.96196 -13.80595 -13.63202 -13.37768 -13.17893 -13.02766 -12.95838 -12.82255 -12.80244 -12.70138 -12.58848 -12.53109 -12.31391 -12.15267 -12.09627 -12.03168 -11.98514 -11.55290 -11.25578 -11.24739 -11.19089 -11.11934 -10.98023 -10.85392 -10.62336 -10.17869 -9.26026 -8.36237 -6.50029 0.85051 1.34357 1.37258 1.42567 1.70150 1.86959 2.41145 2.71208 3.01160 3.42335 3.67860 3.70112 3.82902 3.93893 3.96419 4.00919 4.05595 4.09454 4.21536 4.34793 4.35990 4.39142 4.41567 4.48397 4.56978 4.63724 4.67187 4.69720 4.75072 4.78783 4.84903 4.86338 4.87045 4.92824 4.94689 5.01110 5.08087 5.11209 5.12992 5.18861 5.22066 5.24524 5.28867 5.31765 5.40729 5.44055 5.45275 5.59259 5.59966 5.72499 5.76310 6.07462 6.29272 6.62279 7.14074 7.32151 7.83243 8.77355 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.002979 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.685572 B = 9396.605986 C = 9597.800071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.461 5.461 4 C 0.201 3.799 5 C -0.038 4.038 6 C 0.216 3.784 7 H 0.038 0.962 8 O -0.579 6.579 9 C -0.558 4.558 10 H 0.050 0.950 11 C 0.036 3.964 12 N -0.934 5.934 13 Si 0.930 3.070 14 H -0.296 1.296 15 H -0.294 1.294 16 H -0.208 1.208 17 N -0.337 5.337 18 N -0.351 5.351 19 C 0.351 3.649 20 N -0.448 5.448 21 C 0.023 3.977 22 C 0.070 3.930 23 C -0.068 4.068 24 H 0.033 0.967 25 C -0.134 4.134 26 C -0.059 4.059 27 C -0.139 4.139 28 C -0.140 4.140 29 C -0.139 4.139 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.368 0.632 38 H 0.267 0.733 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.034 0.966 51 H 0.062 0.938 52 H 0.067 0.933 53 H 0.052 0.948 54 H 0.061 0.939 55 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -1.250 -28.686 29.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.023 4.023 3 N -0.155 5.155 4 C -0.068 4.068 5 C -0.078 4.078 6 C 0.157 3.843 7 H 0.055 0.945 8 O -0.386 6.386 9 C -0.596 4.596 10 H 0.068 0.932 11 C -0.164 4.164 12 N -0.573 5.573 13 Si 0.756 3.244 14 H -0.223 1.223 15 H -0.220 1.220 16 H -0.130 1.130 17 N -0.176 5.176 18 N -0.195 5.195 19 C -0.007 4.007 20 N -0.173 5.173 21 C -0.124 4.124 22 C -0.056 4.056 23 C -0.087 4.087 24 H 0.052 0.948 25 C -0.191 4.191 26 C -0.060 4.060 27 C -0.196 4.196 28 C -0.197 4.197 29 C -0.196 4.196 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.216 0.784 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.054 0.946 51 H 0.081 0.919 52 H 0.086 0.914 53 H 0.071 0.929 54 H 0.080 0.920 55 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.450 0.177 -28.768 29.718 hybrid contribution 0.606 -0.858 1.243 1.628 sum -6.844 -0.682 -27.525 28.371 Atomic orbital electron populations 1.22086 0.92681 1.04524 1.02298 1.22222 0.96688 0.77372 1.06008 1.46341 1.49504 1.14617 1.05042 1.24889 1.01920 0.87647 0.92378 1.20627 1.00157 1.03146 0.83883 1.19392 0.91312 0.83939 0.89621 0.94453 1.86701 1.46217 1.23928 1.81773 1.21710 0.97668 1.46941 0.93233 0.93175 1.25695 1.02894 0.93280 0.94566 1.70047 1.34150 1.46808 1.06282 0.86111 0.78849 0.77089 0.82363 1.22310 1.22038 1.13004 1.73893 1.19581 1.20463 1.03668 1.74406 1.22656 1.19174 1.03295 1.22745 1.00052 0.89073 0.88781 1.58951 1.44851 1.18092 0.95361 1.22670 0.89929 0.94896 1.04875 1.22409 0.98255 0.89420 0.95542 1.20988 0.94715 0.94835 0.98146 0.94808 1.21782 0.97310 0.98630 1.01345 1.20487 0.95490 0.93909 0.96081 1.21937 1.01990 1.01864 0.93842 1.21896 0.96487 1.00424 1.00872 1.21876 0.98471 0.99454 0.99782 0.93297 0.92105 0.87718 0.86794 0.88064 0.89234 0.88127 0.78398 0.92399 0.95412 0.90938 0.86233 0.86992 0.93713 0.92792 0.90881 0.93357 0.91241 0.92220 0.92177 0.94637 0.91878 0.91383 0.92948 0.91956 0.95066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.24 71.98 0.74 -1.99 16 2 C 0.10 2.01 6.39 86.38 0.55 2.56 16 3 N -0.46 -13.65 2.81 -514.86 -1.45 -15.09 16 4 C 0.20 7.45 7.11 137.64 0.98 8.43 16 5 C -0.04 -1.43 5.15 29.85 0.15 -1.28 16 6 C 0.22 9.72 2.29 29.85 0.07 9.79 16 7 H 0.04 1.90 7.57 -2.38 -0.02 1.88 16 8 O -0.58 -23.39 9.59 -148.98 -1.43 -24.82 16 9 C -0.56 -30.07 9.36 25.60 0.24 -29.83 16 10 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 11 C 0.04 2.05 5.47 84.66 0.46 2.51 16 12 N -0.93 -56.84 13.96 21.45 0.30 -56.54 16 13 Si 0.93 45.33 26.99 68.60 1.85 47.19 16 14 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 15 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 16 H -0.21 -9.63 5.31 99.48 0.53 -9.10 16 17 N -0.34 -14.31 12.18 -49.54 -0.60 -14.91 16 18 N -0.35 -13.37 10.61 -58.01 -0.62 -13.99 16 19 C 0.35 10.66 6.13 260.12 1.59 12.26 16 20 N -0.45 -9.75 4.24 -730.94 -3.10 -12.84 16 21 C 0.02 0.39 9.30 127.69 1.19 1.58 16 22 C 0.07 1.40 3.39 86.30 0.29 1.69 16 23 C -0.07 -1.37 1.72 -10.79 -0.02 -1.39 16 24 H 0.03 0.98 7.11 -2.39 -0.02 0.96 16 25 C -0.13 -2.16 8.32 71.98 0.60 -1.57 16 26 C -0.06 -1.02 0.57 -52.18 -0.03 -1.05 16 27 C -0.14 -1.69 7.77 71.98 0.56 -1.13 16 28 C -0.14 -2.31 8.13 71.98 0.59 -1.73 16 29 C -0.14 -2.88 8.13 71.98 0.59 -2.30 16 30 H 0.05 1.01 8.06 -2.38 -0.02 0.99 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.84 6.33 -2.39 -0.02 1.82 16 34 H 0.10 2.03 6.43 -2.39 -0.02 2.02 16 35 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.10 3.21 7.69 -2.39 -0.02 3.19 16 37 H 0.37 12.04 7.85 -74.06 -0.58 11.46 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 1.24 6.40 -2.39 -0.02 1.22 16 41 H 0.12 1.20 8.13 -2.38 -0.02 1.18 16 42 H 0.11 1.56 6.53 -2.39 -0.02 1.54 16 43 H 0.04 1.12 5.50 -2.39 -0.01 1.11 16 44 H 0.05 0.85 6.23 -2.39 -0.01 0.83 16 45 H 0.07 0.90 6.64 -2.39 -0.02 0.88 16 46 H 0.05 0.89 7.85 -2.39 -0.02 0.87 16 47 H 0.07 0.70 6.52 -2.39 -0.02 0.69 16 48 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.06 0.68 6.54 -2.39 -0.02 0.66 16 50 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.07 0.97 6.35 -2.39 -0.02 0.96 16 53 H 0.05 1.13 6.33 -2.39 -0.02 1.11 16 54 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 55 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -73.41 412.98 3.62 -69.79 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.11 Total: 24.66 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 8.55 Total: -3.44 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -5.46 Total: -113.38 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -1.43 Total: -24.82 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.85 Total: 47.19 kcal Total: -73.41 3.62 -69.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772194669.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.208 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds