Wall clock time and date at job start Tue Mar 31 2020 22:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 N 1.46496 * 109.46881 * 180.02562 * 3 2 1 5 5 C 1.35193 * 119.99915 * 269.99826 * 4 3 2 6 6 H 1.08002 * 119.99939 * 141.47710 * 5 4 3 7 7 C 1.39958 * 120.00360 * 321.48341 * 5 4 3 8 8 N 1.30784 * 120.00507 * 160.79250 * 7 5 4 9 9 Si 1.86799 * 119.99713 * 340.78571 * 7 5 4 10 10 H 1.48502 * 109.47121 * 95.33438 * 9 7 5 11 11 H 1.48496 * 109.47253 * 215.33517 * 9 7 5 12 12 H 1.48505 * 109.47522 * 335.33940 * 9 7 5 13 13 C 1.34778 * 119.99996 * 90.00199 * 4 3 2 14 14 O 1.21561 * 119.99960 * 4.57814 * 13 4 3 15 15 C 1.48415 * 119.99668 * 184.57666 * 13 4 3 16 16 O 1.21526 * 119.99709 * 84.27885 * 15 13 4 17 17 C 1.47415 * 119.99887 * 264.27339 * 15 13 4 18 18 C 1.39906 * 120.15777 * 355.27775 * 17 15 13 19 19 C 1.37813 * 119.83415 * 180.25342 * 18 17 15 20 20 C 1.38560 * 120.15914 * 359.49629 * 19 18 17 21 21 Br 1.89104 * 119.83838 * 180.27747 * 20 19 18 22 22 C 1.38564 * 120.32673 * 0.25541 * 20 19 18 23 23 C 1.37816 * 120.15609 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47029 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46753 * 299.99361 * 1 2 3 26 26 H 1.08998 * 109.47264 * 59.99821 * 1 2 3 27 27 H 1.09003 * 109.46656 * 240.00302 * 2 1 3 28 28 H 1.09000 * 109.47284 * 120.00730 * 2 1 3 29 29 H 1.08999 * 109.46508 * 60.00316 * 3 2 1 30 30 H 1.08998 * 109.47253 * 300.00185 * 3 2 1 31 31 H 0.97001 * 120.00122 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.08359 * 0.02562 * 18 17 15 33 33 H 1.08002 * 119.91736 * 179.77639 * 19 18 17 34 34 H 1.07992 * 119.92291 * 180.02562 * 22 20 19 35 35 H 1.08001 * 120.07838 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1814 1.4423 1.1699 6 1 5.0852 0.8597 1.2713 7 6 3.7105 2.1970 2.2505 8 7 4.1153 1.9250 3.4640 9 14 2.5040 3.5930 1.9593 10 1 1.1182 3.1007 2.1658 11 1 2.7844 4.6965 2.9125 12 1 2.6499 4.0915 0.5681 13 6 4.1784 1.4427 -1.1681 14 8 3.5730 1.5269 -2.2189 15 6 5.6590 1.3401 -1.1707 16 8 6.1926 0.2500 -1.1089 17 6 6.4822 2.5605 -1.2484 18 6 5.8741 3.8088 -1.4191 19 6 6.6505 4.9449 -1.4962 20 6 8.0293 4.8539 -1.3945 21 35 9.0854 6.4195 -1.4936 22 6 8.6383 3.6215 -1.2202 23 6 7.8750 2.4764 -1.1461 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.7886 2.4478 4.2129 32 1 4.7992 3.8817 -1.4940 33 1 6.1826 5.9088 -1.6315 34 1 9.7134 3.5582 -1.1413 35 1 8.3508 1.5166 -1.0098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072567193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:50 Heat of formation + Delta-G solvation = -32.520510 kcal Electronic energy + Delta-G solvation = -21415.163316 eV Core-core repulsion = 18039.165874 eV Total energy + Delta-G solvation = -3375.997442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.18847 -38.73258 -37.55230 -35.55905 -33.16367 -32.45697 -31.93606 -31.11758 -29.62494 -26.81043 -25.47785 -24.14229 -22.75878 -21.83694 -20.99295 -19.12411 -17.87567 -16.77472 -16.51630 -15.64837 -15.47523 -15.19510 -14.54590 -14.27851 -14.23076 -13.83295 -13.70499 -13.46769 -13.23804 -12.84265 -12.63670 -12.43967 -11.85268 -11.78174 -11.64063 -11.28759 -11.08810 -11.04222 -10.83608 -10.63530 -10.57506 -10.38365 -10.22709 -9.91090 -9.32374 -9.03087 -8.71640 -8.57731 -8.09483 -6.70556 -4.29411 0.59282 1.36020 1.50077 2.47976 2.86872 3.04529 3.10678 3.25562 3.65879 3.92104 3.95566 4.60053 4.76254 4.87784 4.97485 5.30178 5.34126 5.45540 5.51669 5.59328 5.64803 5.79923 5.92616 5.96516 6.15704 6.17272 6.19690 6.24832 6.35291 6.41760 6.64292 6.74103 6.78300 7.09784 7.68601 7.78726 8.03163 8.60866 9.00685 9.36133 10.39143 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.003792 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.453250 B = 7382.807065 C = 8008.916415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.096 3.904 4 N -0.424 5.424 5 C -0.372 4.372 6 H 0.105 0.895 7 C 0.080 3.920 8 N -0.838 5.838 9 Si 0.874 3.126 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.257 1.257 13 C 0.440 3.560 14 O -0.578 6.578 15 C 0.426 3.574 16 O -0.435 6.435 17 C -0.125 4.125 18 C -0.049 4.049 19 C -0.105 4.105 20 C -0.066 4.066 21 Br -0.055 7.055 22 C -0.106 4.106 23 C -0.054 4.054 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.281 0.719 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.686 8.206 -6.455 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.026 4.026 4 N -0.142 5.142 5 C -0.499 4.499 6 H 0.123 0.877 7 C -0.132 4.132 8 N -0.470 5.470 9 Si 0.701 3.299 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.181 1.181 13 C 0.228 3.772 14 O -0.465 6.465 15 C 0.299 3.701 16 O -0.307 6.307 17 C -0.127 4.127 18 C -0.068 4.068 19 C -0.125 4.125 20 C -0.145 4.145 21 Br 0.031 6.969 22 C -0.126 4.126 23 C -0.073 4.073 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.074 8.281 -6.714 12.269 hybrid contribution -0.849 0.393 0.373 1.007 sum 5.225 8.673 -6.341 11.947 Atomic orbital electron populations 1.21706 0.96020 1.01318 1.01464 1.21765 0.95063 0.97369 1.02891 1.21834 0.81811 0.97382 1.01589 1.43173 1.04420 1.61364 1.05268 1.18972 1.11987 1.30812 0.88114 0.87713 1.25475 0.96690 0.96554 0.94479 1.69450 1.41642 1.37192 0.98755 0.86971 0.80863 0.82358 0.79717 1.19595 1.21016 1.18104 1.20184 0.88473 0.83518 0.85062 1.90712 1.68540 1.55822 1.31379 1.22074 0.90056 0.88043 0.69912 1.90572 1.75165 1.29911 1.35066 1.20519 0.94274 0.94754 1.03172 1.21509 1.00874 0.90811 0.93604 1.21042 0.91436 0.99511 1.00470 1.22028 0.94471 0.92152 1.05862 1.96692 1.69289 1.33598 1.97342 1.21009 1.00473 0.90471 1.00668 1.21384 0.92286 0.99003 0.94654 0.92797 0.92927 0.92893 0.91886 0.90933 0.91410 0.90646 0.90858 0.84097 0.84464 0.84466 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.13 -2.50 6.26 -26.73 -0.17 -2.67 16 3 C 0.10 2.03 4.19 -4.04 -0.02 2.01 16 4 N -0.42 -9.98 2.13 -115.87 -0.25 -10.22 16 5 C -0.37 -9.43 9.10 -15.43 -0.14 -9.57 16 6 H 0.11 2.92 7.47 -52.49 -0.39 2.52 16 7 C 0.08 2.00 5.35 -17.35 -0.09 1.90 16 8 N -0.84 -22.05 13.93 55.55 0.77 -21.27 16 9 Si 0.87 19.07 24.87 -169.99 -4.23 14.84 16 10 H -0.27 -5.61 6.73 56.52 0.38 -5.23 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.44 10.27 6.00 -12.07 -0.07 10.20 16 14 O -0.58 -14.09 16.66 5.31 0.09 -14.00 16 15 C 0.43 9.27 5.33 -31.66 -0.17 9.10 16 16 O -0.43 -9.96 17.11 5.34 0.09 -9.87 16 17 C -0.13 -2.30 5.88 -104.91 -0.62 -2.92 16 18 C -0.05 -0.83 9.46 -39.11 -0.37 -1.20 16 19 C -0.10 -1.50 9.77 -39.62 -0.39 -1.89 16 20 C -0.07 -0.89 6.24 -39.34 -0.25 -1.13 16 21 Br -0.05 -0.63 33.69 -68.01 -2.29 -2.92 16 22 C -0.11 -1.42 9.77 -39.62 -0.39 -1.81 16 23 C -0.05 -0.85 9.60 -39.11 -0.38 -1.22 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.07 1.44 3.13 -51.93 -0.16 1.28 16 30 H 0.08 1.55 7.36 -51.93 -0.38 1.16 16 31 H 0.28 6.82 8.30 -40.82 -0.34 6.49 16 32 H 0.14 2.48 7.15 -52.49 -0.38 2.10 16 33 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.14 2.08 7.66 -52.49 -0.40 1.68 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -27.98 324.09 -7.43 -35.41 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.83 Total: 4.19 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.67 Total: -1.04 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.53 Total: -31.50 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.18 Total: -23.87 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.23 Total: 14.84 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.98 -7.43 -35.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072567193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.893 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds