Wall clock time and date at job start Tue Mar 31 2020 22:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 N 1.46496 * 109.46881 * 180.02562 * 3 2 1 5 5 C 1.35193 * 119.99915 * 269.99826 * 4 3 2 6 6 H 1.08002 * 119.99939 * 141.47710 * 5 4 3 7 7 C 1.39958 * 120.00360 * 321.48341 * 5 4 3 8 8 N 1.30784 * 120.00507 * 160.79250 * 7 5 4 9 9 Si 1.86799 * 119.99713 * 340.78571 * 7 5 4 10 10 H 1.48502 * 109.47121 * 95.33438 * 9 7 5 11 11 H 1.48496 * 109.47253 * 215.33517 * 9 7 5 12 12 H 1.48505 * 109.47522 * 335.33940 * 9 7 5 13 13 C 1.34778 * 119.99996 * 90.00199 * 4 3 2 14 14 O 1.21561 * 119.99960 * 4.57814 * 13 4 3 15 15 C 1.48415 * 119.99668 * 184.57666 * 13 4 3 16 16 O 1.21526 * 119.99709 * 84.27885 * 15 13 4 17 17 C 1.47415 * 119.99887 * 264.27339 * 15 13 4 18 18 C 1.39906 * 120.15777 * 355.27775 * 17 15 13 19 19 C 1.37813 * 119.83415 * 180.25342 * 18 17 15 20 20 C 1.38560 * 120.15914 * 359.49629 * 19 18 17 21 21 Br 1.89104 * 119.83838 * 180.27747 * 20 19 18 22 22 C 1.38564 * 120.32673 * 0.25541 * 20 19 18 23 23 C 1.37816 * 120.15609 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47029 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46753 * 299.99361 * 1 2 3 26 26 H 1.08998 * 109.47264 * 59.99821 * 1 2 3 27 27 H 1.09003 * 109.46656 * 240.00302 * 2 1 3 28 28 H 1.09000 * 109.47284 * 120.00730 * 2 1 3 29 29 H 1.08999 * 109.46508 * 60.00316 * 3 2 1 30 30 H 1.08998 * 109.47253 * 300.00185 * 3 2 1 31 31 H 0.97001 * 120.00122 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.08359 * 0.02562 * 18 17 15 33 33 H 1.08002 * 119.91736 * 179.77639 * 19 18 17 34 34 H 1.07992 * 119.92291 * 180.02562 * 22 20 19 35 35 H 1.08001 * 120.07838 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1814 1.4423 1.1699 6 1 5.0852 0.8597 1.2713 7 6 3.7105 2.1970 2.2505 8 7 4.1153 1.9250 3.4640 9 14 2.5040 3.5930 1.9593 10 1 1.1182 3.1007 2.1658 11 1 2.7844 4.6965 2.9125 12 1 2.6499 4.0915 0.5681 13 6 4.1784 1.4427 -1.1681 14 8 3.5730 1.5269 -2.2189 15 6 5.6590 1.3401 -1.1707 16 8 6.1926 0.2500 -1.1089 17 6 6.4822 2.5605 -1.2484 18 6 5.8741 3.8088 -1.4191 19 6 6.6505 4.9449 -1.4962 20 6 8.0293 4.8539 -1.3945 21 35 9.0854 6.4195 -1.4936 22 6 8.6383 3.6215 -1.2202 23 6 7.8750 2.4764 -1.1461 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.7886 2.4478 4.2129 32 1 4.7992 3.8817 -1.4940 33 1 6.1826 5.9088 -1.6315 34 1 9.7134 3.5582 -1.1413 35 1 8.3508 1.5166 -1.0098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072567193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:49 Heat of formation + Delta-G solvation = -47.509643 kcal Electronic energy + Delta-G solvation = -21415.813294 eV Core-core repulsion = 18039.165874 eV Total energy + Delta-G solvation = -3376.647420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84260 -40.20203 -39.17285 -37.40001 -34.85741 -33.80796 -33.59354 -32.31096 -30.82611 -28.35060 -27.34899 -25.69904 -23.99060 -23.24919 -22.52219 -20.90427 -19.49732 -18.44868 -18.20746 -17.45623 -16.76208 -16.74905 -16.05466 -15.80330 -15.76511 -15.41054 -15.22880 -14.86365 -14.67559 -14.43455 -14.15235 -14.10624 -13.43631 -13.29106 -13.02171 -12.69616 -12.56698 -12.46206 -12.31347 -12.24811 -11.94489 -11.93331 -11.60307 -11.37151 -11.09796 -10.39470 -10.21199 -9.99528 -9.87555 -8.65418 -6.29444 -0.76166 0.17695 0.41741 0.95256 1.11177 1.24923 1.39339 1.46068 2.08518 2.11003 2.54860 2.73020 3.29307 3.56285 3.76019 3.84815 3.95969 4.06408 4.11790 4.20661 4.32576 4.43558 4.50016 4.57987 4.81219 4.86744 4.93378 4.96970 5.08472 5.14386 5.17157 5.18483 5.40467 5.54181 5.82347 6.01156 6.06294 6.67416 7.07491 7.45038 8.48160 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.003792 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.453250 B = 7382.807065 C = 8008.916415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.088 3.912 4 N -0.429 5.429 5 C -0.375 4.375 6 H 0.067 0.933 7 C 0.046 3.954 8 N -0.874 5.874 9 Si 0.924 3.076 10 H -0.248 1.248 11 H -0.277 1.277 12 H -0.253 1.253 13 C 0.436 3.564 14 O -0.593 6.593 15 C 0.421 3.579 16 O -0.462 6.462 17 C -0.155 4.155 18 C -0.060 4.060 19 C -0.100 4.100 20 C -0.063 4.063 21 Br -0.024 7.024 22 C -0.096 4.096 23 C -0.056 4.056 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.288 0.712 32 H 0.128 0.872 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 10.422 -6.817 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C -0.033 4.033 4 N -0.148 5.148 5 C -0.502 4.502 6 H 0.085 0.915 7 C -0.163 4.163 8 N -0.508 5.508 9 Si 0.747 3.253 10 H -0.173 1.173 11 H -0.203 1.203 12 H -0.177 1.177 13 C 0.223 3.777 14 O -0.480 6.480 15 C 0.296 3.704 16 O -0.337 6.337 17 C -0.157 4.157 18 C -0.079 4.079 19 C -0.120 4.120 20 C -0.143 4.143 21 Br 0.062 6.938 22 C -0.115 4.115 23 C -0.075 4.075 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.146 0.854 33 H 0.180 0.820 34 H 0.188 0.812 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.918 10.500 -7.076 13.977 hybrid contribution -0.675 -0.249 0.463 0.855 sum 5.243 10.252 -6.613 13.279 Atomic orbital electron populations 1.21677 0.92568 1.03072 1.02468 1.21729 0.98041 0.95519 1.01445 1.22043 0.80359 0.98974 1.01917 1.43254 1.05490 1.61410 1.04654 1.18633 1.11543 1.30978 0.89069 0.91513 1.26052 0.98328 0.98102 0.93801 1.69516 1.43256 1.38357 0.99648 0.86172 0.79813 0.79462 0.79845 1.17340 1.20294 1.17682 1.20587 0.89452 0.82789 0.84841 1.90674 1.69227 1.56484 1.31664 1.22321 0.89767 0.89176 0.69089 1.90538 1.75293 1.30973 1.36891 1.20384 0.95199 0.93665 1.06467 1.21470 1.00615 0.91267 0.94597 1.21273 0.91801 0.99523 0.99379 1.22298 0.94643 0.93435 1.03915 1.96738 1.68258 1.31670 1.97123 1.21335 1.01847 0.89486 0.98857 1.21516 0.91244 1.00341 0.94377 0.90764 0.92199 0.91562 0.93056 0.92662 0.91224 0.89892 0.90143 0.85380 0.81952 0.81227 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.22 16 2 C -0.13 -4.86 6.26 30.60 0.19 -4.67 16 3 C 0.09 3.72 4.19 86.38 0.36 4.08 16 4 N -0.43 -20.74 2.13 -638.78 -1.36 -22.10 16 5 C -0.37 -19.72 9.10 84.59 0.77 -18.95 16 6 H 0.07 3.97 7.47 -2.91 -0.02 3.95 16 7 C 0.05 2.34 5.35 85.27 0.46 2.80 16 8 N -0.87 -46.67 13.93 21.83 0.30 -46.37 16 9 Si 0.92 38.38 24.87 68.60 1.71 40.08 16 10 H -0.25 -9.46 6.73 99.48 0.67 -8.79 16 11 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 12 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 13 C 0.44 21.04 6.00 86.96 0.52 21.56 16 14 O -0.59 -29.59 16.66 -3.91 -0.07 -29.65 16 15 C 0.42 19.19 5.33 27.40 0.15 19.34 16 16 O -0.46 -22.39 17.11 -3.80 -0.06 -22.45 16 17 C -0.16 -5.84 5.88 -20.05 -0.12 -5.96 16 18 C -0.06 -2.04 9.46 22.57 0.21 -1.83 16 19 C -0.10 -2.68 9.77 22.25 0.22 -2.46 16 20 C -0.06 -1.55 6.24 22.42 0.14 -1.41 16 21 Br -0.02 -0.47 33.69 -20.37 -0.69 -1.15 16 22 C -0.10 -2.35 9.77 22.25 0.22 -2.13 16 23 C -0.06 -1.72 9.60 22.57 0.22 -1.51 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 2.88 3.13 -2.39 -0.01 2.87 16 30 H 0.08 3.34 7.36 -2.39 -0.02 3.32 16 31 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 32 H 0.13 4.59 7.15 -2.91 -0.02 4.57 16 33 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.15 4.33 7.66 -2.91 -0.02 4.31 16 Total: -1.00 -61.85 324.09 4.96 -56.89 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 1.08 Total: 19.11 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.05 Total: 5.65 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -1.06 Total: -68.47 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.13 Total: -52.11 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.71 Total: 40.08 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -0.69 Total: -1.15 kcal Total: -61.85 4.96 -56.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072567193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.377 kcal (2) G-P(sol) polarization free energy of solvation -61.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds