Wall clock time and date at job start Tue Mar 31 2020 22:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99690 * 2 1 4 4 H 1.48503 * 109.46844 * 269.52177 * 3 2 1 5 5 H 1.48500 * 109.47433 * 29.52294 * 3 2 1 6 6 H 1.48502 * 109.47100 * 149.52793 * 3 2 1 7 7 C 1.38808 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00174 * 340.05207 * 7 2 1 9 9 N 1.36936 * 120.00091 * 160.04316 * 7 2 1 10 10 C 1.47045 * 120.44954 * 331.73229 * 9 7 2 11 11 C 1.53369 * 108.59111 * 235.05250 * 10 9 7 12 12 N 1.46964 * 108.78275 * 310.83368 * 11 10 9 13 13 C 1.34773 * 120.59890 * 235.12207 * 12 11 10 14 14 O 1.21546 * 120.00043 * 174.41827 * 13 12 11 15 15 C 1.47844 * 119.99803 * 354.41217 * 13 12 11 16 16 C 1.39563 * 120.55873 * 321.07999 * 15 13 12 17 17 N 1.31661 * 120.59061 * 179.69864 * 16 15 13 18 18 C 1.31948 * 121.88761 * 0.58414 * 17 16 15 19 19 C 1.38399 * 121.06731 * 359.70472 * 18 17 16 20 20 Br 1.89106 * 120.35509 * 179.97438 * 19 18 17 21 21 C 1.38482 * 119.28651 * 359.97438 * 19 18 17 22 22 C 1.46968 * 118.80834 * 55.13824 * 12 11 10 23 23 C 1.46968 * 120.59795 * 151.83420 * 9 7 2 24 24 H 0.96994 * 120.00411 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.49151 * 115.40933 * 10 9 7 26 26 H 1.08994 * 109.77708 * 354.86836 * 10 9 7 27 27 H 1.09004 * 109.61131 * 191.00381 * 11 10 9 28 28 H 1.09006 * 109.60900 * 70.66636 * 11 10 9 29 29 H 1.08001 * 119.70055 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.46447 * 179.67670 * 18 17 16 31 31 H 1.07996 * 120.86119 * 179.97438 * 21 19 18 32 32 H 1.09002 * 109.61152 * 64.52157 * 22 12 11 33 33 H 1.09001 * 109.61207 * 184.86370 * 22 12 11 34 34 H 1.09004 * 109.60517 * 5.02495 * 23 9 7 35 35 H 1.08997 * 109.75253 * 244.59933 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5076 2.0406 -1.4001 5 1 1.4425 2.6556 0.6899 6 1 3.5426 1.4432 0.7100 7 6 2.0103 -1.2021 0.0005 8 1 1.5189 -2.1092 0.3200 9 7 3.3179 -1.2379 -0.4042 10 6 3.8231 -0.2604 -1.3797 11 6 4.4498 -1.0213 -2.5547 12 7 5.3696 -2.0371 -2.0238 13 6 6.6566 -2.0727 -2.4225 14 8 7.4326 -2.8506 -1.9028 15 6 7.1244 -1.1655 -3.4920 16 6 6.3139 -0.8910 -4.5946 17 7 6.7275 -0.0786 -5.5445 18 6 7.9148 0.4954 -5.5027 19 6 8.7802 0.2702 -4.4464 20 35 10.4776 1.1028 -4.4074 21 6 8.3897 -0.5715 -3.4184 22 6 4.8609 -3.0139 -1.0506 23 6 4.2379 -2.2536 0.1267 24 1 -0.4850 0.8400 -0.0004 25 1 4.5776 0.3685 -0.9071 26 1 3.0017 0.3583 -1.7411 27 1 4.9994 -0.3261 -3.1893 28 1 3.6657 -1.5061 -3.1365 29 1 5.3369 -1.3457 -4.6669 30 1 8.2164 1.1512 -6.3061 31 1 9.0449 -0.7655 -2.5821 32 1 4.1044 -3.6407 -1.5227 33 1 5.6814 -3.6365 -0.6940 34 1 3.6882 -2.9489 0.7614 35 1 5.0238 -1.7712 0.7077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103881952.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:52 Heat of formation + Delta-G solvation = 53.065412 kcal Electronic energy + Delta-G solvation = -21445.596233 eV Core-core repulsion = 18105.602826 eV Total energy + Delta-G solvation = -3339.993407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.07070 -39.35393 -37.23754 -34.29156 -33.51086 -32.74036 -31.51315 -30.85846 -29.82762 -27.50656 -25.05875 -24.10098 -23.36426 -23.10670 -21.07740 -19.31665 -17.83600 -17.49171 -16.94596 -16.37430 -15.92074 -15.46957 -14.80497 -14.62745 -14.45852 -14.20865 -13.96396 -13.80107 -13.61025 -12.98306 -12.70692 -12.53590 -12.21566 -12.10828 -11.69971 -11.22261 -11.07895 -10.86698 -10.56175 -10.48929 -10.34620 -10.14125 -10.06500 -9.67027 -9.63487 -9.24269 -8.99124 -8.47918 -7.10405 -6.07765 -3.46611 0.25568 0.62167 1.07923 2.59094 2.94824 3.18120 3.34000 3.39316 3.40868 3.93494 4.23876 4.31101 4.39291 4.40126 4.71819 4.75888 4.88092 5.20094 5.31955 5.37914 5.42958 5.52116 5.64194 5.69845 5.87217 5.90826 5.98431 6.05162 6.30095 6.36682 6.58536 6.69007 7.34268 7.45083 7.79258 8.09185 8.19740 8.77218 9.56558 9.91969 11.07858 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.003397 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.553413 B = 8240.315847 C = 8874.991087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.027 3.973 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.266 4.266 8 H 0.089 0.911 9 N -0.604 5.604 10 C 0.112 3.888 11 C 0.078 3.922 12 N -0.588 5.588 13 C 0.559 3.441 14 O -0.540 6.540 15 C -0.169 4.169 16 C 0.147 3.853 17 N -0.474 5.474 18 C 0.149 3.851 19 C -0.155 4.155 20 Br -0.028 7.028 21 C 0.005 3.995 22 C 0.095 3.905 23 C 0.135 3.865 24 H 0.265 0.735 25 H 0.030 0.970 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.291 1.323 -11.397 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.710 3.290 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.106 0.894 9 N -0.328 5.328 10 C -0.015 4.015 11 C -0.047 4.047 12 N -0.320 5.320 13 C 0.346 3.654 14 O -0.419 6.419 15 C -0.175 4.175 16 C -0.011 4.011 17 N -0.182 5.182 18 C -0.010 4.010 19 C -0.237 4.237 20 Br 0.057 6.943 21 C -0.023 4.023 22 C -0.029 4.029 23 C 0.008 3.992 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.192 0.808 30 H 0.187 0.813 31 H 0.171 0.829 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 19.563 1.468 -11.762 22.873 hybrid contribution 0.523 0.795 0.704 1.184 sum 20.086 2.263 -11.058 23.040 Atomic orbital electron populations 1.69810 1.05690 1.26774 1.52293 1.25295 0.95220 0.97521 0.99180 0.87041 0.79985 0.84738 0.77216 1.21382 1.22805 1.19735 1.18931 0.84299 0.94884 1.41305 0.89354 1.44318 1.08310 1.34134 1.46041 1.21791 0.97827 0.92374 0.89500 1.22820 0.92735 0.90838 0.98287 1.47946 1.08793 1.32061 1.43156 1.17935 0.82276 0.83052 0.82169 1.90770 1.53905 1.40452 1.56740 1.21079 0.96060 1.01818 0.98516 1.23450 0.98816 0.91235 0.87600 1.67927 1.14902 1.08499 1.26905 1.23063 0.88040 0.94720 0.95183 1.22881 0.95842 1.04545 1.00410 1.96776 1.19657 1.79044 1.98839 1.21630 0.94052 0.89991 0.96651 1.22331 0.98851 0.90927 0.90747 1.21326 0.92857 0.91971 0.93022 0.92538 0.95197 0.89343 0.90379 0.90008 0.80781 0.81310 0.82875 0.90888 0.89274 0.90276 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.97 55.49 0.78 -25.73 16 2 C 0.03 0.75 5.24 -17.43 -0.09 0.66 16 3 Si 0.88 21.32 24.36 -169.99 -4.14 17.18 16 4 H -0.29 -6.54 6.47 56.52 0.37 -6.17 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.27 -6.61 6.85 56.52 0.39 -6.22 16 7 C -0.27 -7.00 10.03 -15.06 -0.15 -7.15 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 N -0.60 -13.41 2.74 -171.98 -0.47 -13.88 16 10 C 0.11 2.24 4.37 -3.55 -0.02 2.22 16 11 C 0.08 1.22 5.06 -3.60 -0.02 1.20 16 12 N -0.59 -9.33 2.95 -173.60 -0.51 -9.84 16 13 C 0.56 8.73 7.36 -12.33 -0.09 8.64 16 14 O -0.54 -9.76 16.34 5.33 0.09 -9.68 16 15 C -0.17 -2.21 5.20 -104.82 -0.54 -2.76 16 16 C 0.15 1.75 8.54 -17.13 -0.15 1.60 16 17 N -0.47 -5.54 10.34 -12.89 -0.13 -5.67 16 18 C 0.15 1.49 10.93 -17.44 -0.19 1.30 16 19 C -0.16 -1.61 6.24 -39.43 -0.25 -1.85 16 20 Br -0.03 -0.25 33.73 -68.01 -2.29 -2.54 16 21 C 0.00 0.06 9.55 -38.84 -0.37 -0.32 16 22 C 0.09 1.52 6.60 -3.60 -0.02 1.50 16 23 C 0.13 2.50 6.68 -3.60 -0.02 2.48 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.03 0.61 7.27 -51.93 -0.38 0.24 16 26 H 0.09 1.92 4.34 -51.93 -0.23 1.70 16 27 H 0.08 1.06 4.55 -51.93 -0.24 0.83 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.18 1.86 6.45 -52.49 -0.34 1.52 16 30 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.38 6.99 -51.93 -0.36 1.01 16 34 H 0.08 1.41 7.93 -51.93 -0.41 1.00 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -30.64 305.08 -7.68 -38.32 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.67 Total: -0.27 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -1.91 Total: 7.52 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.34 Total: -55.13 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.18 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -2.29 Total: -2.54 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.64 -7.68 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103881952.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.389 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds