Wall clock time and date at job start Tue Mar 31 2020 22:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47444 * 2 1 4 4 C 1.50699 * 109.47315 * 120.00035 * 2 1 3 5 5 H 1.08002 * 120.00511 * 120.00177 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99864 * 4 2 1 7 7 N 1.31514 * 119.99573 * 180.27665 * 6 4 2 8 8 Si 1.86800 * 119.99781 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 89.99934 * 8 6 4 10 10 H 1.48499 * 109.47026 * 209.99782 * 8 6 4 11 11 H 1.48496 * 109.47474 * 329.99818 * 8 6 4 12 12 N 1.46506 * 109.47399 * 240.00042 * 2 1 3 13 13 C 1.34774 * 120.00211 * 84.99626 * 12 2 1 14 14 O 1.21285 * 119.99580 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99909 * 180.02562 * 13 12 2 16 16 H 1.08989 * 110.83222 * 59.29841 * 15 13 12 17 17 C 1.54707 * 110.93686 * 295.58559 * 15 13 12 18 18 O 1.43866 * 102.73982 * 267.12278 * 17 15 13 19 19 C 1.36149 * 109.24737 * 332.25344 * 18 17 15 20 20 C 1.39285 * 129.87370 * 198.43871 * 19 18 17 21 21 C 1.37932 * 120.25040 * 181.00179 * 20 19 18 22 22 C 1.38364 * 120.34003 * 359.94744 * 21 20 19 23 23 Br 1.89106 * 120.12589 * 179.87852 * 22 21 20 24 24 C 1.38421 * 119.74622 * 359.85974 * 22 21 20 25 25 C 1.37736 * 119.97226 * 359.97438 * 24 22 21 26 26 H 1.08997 * 109.47143 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47225 * 299.99839 * 1 2 3 28 28 H 1.08998 * 109.47413 * 60.00166 * 1 2 3 29 29 H 0.97004 * 119.99485 * 179.72881 * 7 6 4 30 30 H 0.97001 * 119.99797 * 265.00725 * 12 2 1 31 31 H 1.08999 * 110.74742 * 25.45827 * 17 15 13 32 32 H 1.09001 * 110.74948 * 148.80822 * 17 15 13 33 33 H 1.07999 * 119.87618 * 0.97583 * 20 19 18 34 34 H 1.08001 * 119.82888 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.01631 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1422 -0.8561 3.5565 8 14 0.6259 1.2799 2.6540 9 1 -0.8020 0.8746 2.6992 10 1 0.9772 1.9955 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8589 1.1586 -2.4115 15 6 2.6489 -0.7289 -3.5877 16 1 1.9979 -1.5641 -3.8456 17 6 4.1084 -1.2045 -3.3949 18 8 4.8722 -0.1112 -3.9342 19 6 4.1343 0.5264 -4.8842 20 6 4.5395 1.3896 -5.8994 21 6 3.6083 1.9467 -6.7509 22 6 2.2641 1.6526 -6.6054 23 35 0.9922 2.4224 -7.7740 24 6 1.8540 0.7924 -5.6013 25 6 2.7833 0.2328 -4.7525 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.9111 -0.5223 4.4375 30 1 2.2490 -1.6318 -1.1526 31 1 4.3313 -1.3477 -2.3376 32 1 4.2938 -2.1198 -3.9571 33 1 5.5868 1.6240 -6.0201 34 1 3.9300 2.6155 -7.5355 35 1 0.8059 0.5595 -5.4841 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121599739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:14 Heat of formation + Delta-G solvation = -31.457105 kcal Electronic energy + Delta-G solvation = -21105.799326 eV Core-core repulsion = 17729.847996 eV Total energy + Delta-G solvation = -3375.951329 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56404 -38.81793 -37.67231 -35.11896 -33.07617 -32.37964 -31.93410 -30.41091 -29.12216 -28.77495 -25.27234 -24.30613 -22.97399 -22.08915 -20.91251 -19.72770 -18.03954 -17.10854 -16.90683 -16.40830 -15.91623 -15.48249 -15.40355 -14.54258 -14.18051 -14.09356 -13.75036 -13.37762 -13.17166 -12.98891 -12.89517 -12.25900 -12.07300 -11.96545 -11.77960 -11.69511 -11.25964 -11.17142 -10.85868 -10.46714 -10.41709 -10.23928 -9.76779 -9.41212 -9.29669 -9.06397 -8.81284 -8.27256 -8.22907 -6.25939 -4.29023 0.93611 1.08621 1.49504 2.89041 3.16067 3.20291 3.30150 3.32879 3.37275 3.85696 4.08765 4.27612 4.39853 4.60566 4.87139 4.90597 4.99594 5.09125 5.23157 5.32839 5.38927 5.44822 5.70995 5.79698 5.99471 6.15239 6.23794 6.24878 6.31162 6.49512 6.79042 6.90366 7.10526 7.19107 7.44358 8.05139 8.41955 8.68194 8.79909 9.34581 10.86074 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.003148 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.580139 B = 8893.060807 C = 9884.040848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.237 3.763 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.081 0.919 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.699 5.699 13 C 0.512 3.488 14 O -0.538 6.538 15 C -0.104 4.104 16 H 0.124 0.876 17 C 0.061 3.939 18 O -0.294 6.294 19 C 0.132 3.868 20 C -0.137 4.137 21 C -0.053 4.053 22 C -0.124 4.124 23 Br -0.052 7.052 24 C -0.021 4.021 25 C -0.139 4.139 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.268 0.732 30 H 0.395 0.605 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.203 0.832 -23.773 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.347 5.347 13 C 0.295 3.705 14 O -0.415 6.415 15 C -0.126 4.126 16 H 0.141 0.859 17 C -0.014 4.014 18 O -0.207 6.207 19 C 0.086 3.914 20 C -0.157 4.157 21 C -0.073 4.073 22 C -0.203 4.203 23 Br 0.033 6.967 24 C -0.041 4.041 25 C -0.141 4.141 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.228 0.772 31 H 0.137 0.863 32 H 0.109 0.891 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.746 2.003 -23.908 24.004 hybrid contribution -0.459 -0.019 0.715 0.850 sum 0.286 1.983 -23.194 23.280 Atomic orbital electron populations 1.22448 0.99212 1.00889 0.99391 1.19132 0.90186 0.94700 0.82575 0.93330 1.21010 1.33438 1.14536 0.88482 0.90141 1.24822 0.95453 0.96654 0.95514 1.69863 1.44696 1.40121 0.98081 0.86886 0.80528 0.83615 0.77537 1.20253 1.22064 1.18692 1.46173 1.65151 1.13756 1.09627 1.19933 0.78979 0.87451 0.84094 1.90697 1.50409 1.15635 1.84733 1.21662 0.99281 0.98655 0.92999 0.85856 1.23963 0.86746 0.88860 1.01814 1.86901 1.41139 1.43184 1.49497 1.19679 0.89575 0.93340 0.88793 1.20172 1.00635 1.00447 0.94427 1.20772 0.90475 0.97743 0.98317 1.21434 0.93641 1.04764 1.00462 1.96677 1.56052 1.82539 1.61445 1.20132 0.99537 0.93054 0.91373 1.20142 0.93308 1.03094 0.97566 0.92754 0.93363 0.94577 0.92215 0.77153 0.86312 0.89055 0.84448 0.84232 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 8.96 37.15 0.33 -3.19 16 2 C 0.24 5.52 2.15 -69.08 -0.15 5.37 16 3 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 4 C -0.54 -14.12 9.31 -34.44 -0.32 -14.44 16 5 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 8 Si 0.88 21.58 24.37 -169.99 -4.14 17.44 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 12 N -0.70 -13.04 4.89 -54.93 -0.27 -13.31 16 13 C 0.51 9.27 7.08 -10.99 -0.08 9.19 16 14 O -0.54 -12.06 15.80 5.55 0.09 -11.98 16 15 C -0.10 -1.37 3.52 -91.56 -0.32 -1.69 16 16 H 0.12 1.21 8.14 -51.94 -0.42 0.79 16 17 C 0.06 0.70 7.54 38.06 0.29 0.99 16 18 O -0.29 -4.18 11.11 -20.22 -0.22 -4.41 16 19 C 0.13 1.84 7.04 -38.96 -0.27 1.56 16 20 C -0.14 -1.60 10.06 -39.30 -0.40 -1.99 16 21 C -0.05 -0.58 9.76 -39.65 -0.39 -0.96 16 22 C -0.12 -1.49 6.23 -39.47 -0.25 -1.74 16 23 Br -0.05 -0.56 33.71 -68.01 -2.29 -2.85 16 24 C -0.02 -0.28 9.78 -39.70 -0.39 -0.67 16 25 C -0.14 -1.94 4.93 -104.10 -0.51 -2.45 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.39 6.19 8.54 -40.82 -0.35 5.84 16 31 H 0.12 1.35 7.77 -51.93 -0.40 0.95 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -32.34 315.42 -7.69 -40.03 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.83 Total: 3.46 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.55 Total: -7.94 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.51 Total: -38.52 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.14 Total: -16.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.44 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.34 -7.69 -40.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121599739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.573 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds