Wall clock time and date at job start Tue Mar 31 2020 22:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47444 * 2 1 4 4 C 1.50699 * 109.47315 * 120.00035 * 2 1 3 5 5 H 1.08002 * 120.00511 * 120.00177 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99864 * 4 2 1 7 7 N 1.31514 * 119.99573 * 180.27665 * 6 4 2 8 8 Si 1.86800 * 119.99781 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 89.99934 * 8 6 4 10 10 H 1.48499 * 109.47026 * 209.99782 * 8 6 4 11 11 H 1.48496 * 109.47474 * 329.99818 * 8 6 4 12 12 N 1.46506 * 109.47399 * 240.00042 * 2 1 3 13 13 C 1.34774 * 120.00211 * 84.99626 * 12 2 1 14 14 O 1.21285 * 119.99580 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99909 * 180.02562 * 13 12 2 16 16 H 1.08989 * 110.83222 * 59.29841 * 15 13 12 17 17 C 1.54707 * 110.93686 * 295.58559 * 15 13 12 18 18 O 1.43866 * 102.73982 * 267.12278 * 17 15 13 19 19 C 1.36149 * 109.24737 * 332.25344 * 18 17 15 20 20 C 1.39285 * 129.87370 * 198.43871 * 19 18 17 21 21 C 1.37932 * 120.25040 * 181.00179 * 20 19 18 22 22 C 1.38364 * 120.34003 * 359.94744 * 21 20 19 23 23 Br 1.89106 * 120.12589 * 179.87852 * 22 21 20 24 24 C 1.38421 * 119.74622 * 359.85974 * 22 21 20 25 25 C 1.37736 * 119.97226 * 359.97438 * 24 22 21 26 26 H 1.08997 * 109.47143 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47225 * 299.99839 * 1 2 3 28 28 H 1.08998 * 109.47413 * 60.00166 * 1 2 3 29 29 H 0.97004 * 119.99485 * 179.72881 * 7 6 4 30 30 H 0.97001 * 119.99797 * 265.00725 * 12 2 1 31 31 H 1.08999 * 110.74742 * 25.45827 * 17 15 13 32 32 H 1.09001 * 110.74948 * 148.80822 * 17 15 13 33 33 H 1.07999 * 119.87618 * 0.97583 * 20 19 18 34 34 H 1.08001 * 119.82888 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.01631 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1422 -0.8561 3.5565 8 14 0.6259 1.2799 2.6540 9 1 -0.8020 0.8746 2.6992 10 1 0.9772 1.9955 3.9070 11 1 0.8492 2.1774 1.4922 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8589 1.1586 -2.4115 15 6 2.6489 -0.7289 -3.5877 16 1 1.9979 -1.5641 -3.8456 17 6 4.1084 -1.2045 -3.3949 18 8 4.8722 -0.1112 -3.9342 19 6 4.1343 0.5264 -4.8842 20 6 4.5395 1.3896 -5.8994 21 6 3.6083 1.9467 -6.7509 22 6 2.2641 1.6526 -6.6054 23 35 0.9922 2.4224 -7.7740 24 6 1.8540 0.7924 -5.6013 25 6 2.7833 0.2328 -4.7525 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.9111 -0.5223 4.4375 30 1 2.2490 -1.6318 -1.1526 31 1 4.3313 -1.3477 -2.3376 32 1 4.2938 -2.1198 -3.9571 33 1 5.5868 1.6240 -6.0201 34 1 3.9300 2.6155 -7.5355 35 1 0.8059 0.5595 -5.4841 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121599739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:14 Heat of formation + Delta-G solvation = -53.628022 kcal Electronic energy + Delta-G solvation = -21106.760729 eV Core-core repulsion = 17729.847996 eV Total energy + Delta-G solvation = -3376.912733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.58090 -40.27240 -38.60776 -36.88606 -34.52545 -33.97826 -32.83006 -31.91118 -30.30352 -29.69310 -27.24653 -25.42079 -24.09293 -23.11397 -22.37974 -21.26150 -19.44335 -18.37612 -18.01885 -17.81643 -17.27846 -16.97624 -16.51422 -15.98227 -15.67304 -15.18891 -14.93605 -14.78092 -14.63202 -14.28479 -14.13761 -13.89327 -13.68400 -13.30646 -12.93106 -12.81845 -12.69302 -12.62037 -12.16246 -12.08942 -11.66219 -11.39614 -11.30511 -11.27561 -10.89763 -10.81664 -10.06379 -9.94371 -9.18142 -8.39702 -6.45169 -0.00146 0.15409 0.60239 1.25217 1.34412 1.42864 1.58219 2.17179 2.20093 2.24466 2.62122 2.96748 3.08424 3.44270 3.69654 3.83513 4.02343 4.13783 4.28440 4.35561 4.43551 4.49456 4.54109 4.57962 4.68746 4.81722 4.87589 4.98322 5.10198 5.21074 5.29633 5.35612 5.40138 5.58878 5.97054 6.11317 6.56368 6.79522 7.17142 7.37575 8.75253 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.003148 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.580139 B = 8893.060807 C = 9884.040848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 H 0.018 0.982 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.935 3.065 9 H -0.259 1.259 10 H -0.293 1.293 11 H -0.267 1.267 12 N -0.695 5.695 13 C 0.511 3.489 14 O -0.584 6.584 15 C -0.094 4.094 16 H 0.161 0.839 17 C 0.061 3.939 18 O -0.315 6.315 19 C 0.112 3.888 20 C -0.139 4.139 21 C -0.048 4.048 22 C -0.133 4.133 23 Br -0.041 7.041 24 C -0.034 4.034 25 C -0.158 4.158 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.270 0.730 30 H 0.411 0.589 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 0.660 -25.727 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.138 3.862 3 H 0.036 0.964 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.763 3.237 9 H -0.184 1.184 10 H -0.220 1.220 11 H -0.192 1.192 12 N -0.344 5.344 13 C 0.297 3.703 14 O -0.464 6.464 15 C -0.115 4.115 16 H 0.178 0.822 17 C -0.013 4.013 18 O -0.229 6.229 19 C 0.066 3.934 20 C -0.158 4.158 21 C -0.067 4.067 22 C -0.212 4.212 23 Br 0.044 6.956 24 C -0.054 4.054 25 C -0.161 4.161 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.247 0.753 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.177 0.823 34 H 0.185 0.815 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.481 1.794 -25.885 25.951 hybrid contribution -0.321 0.040 1.240 1.282 sum 0.160 1.834 -24.644 24.713 Atomic orbital electron populations 1.22336 0.97746 1.01880 0.99334 1.18755 0.91248 0.93020 0.83226 0.96447 1.21241 1.32352 1.13704 0.89684 0.91936 1.25497 0.96791 0.99057 0.95471 1.69962 1.46520 1.41862 0.98645 0.86070 0.80019 0.80601 0.77040 1.18420 1.22028 1.19230 1.45957 1.65228 1.14430 1.08798 1.20775 0.77562 0.86988 0.84971 1.90670 1.52278 1.17891 1.85596 1.21661 1.00907 0.99073 0.89904 0.82154 1.24202 0.85088 0.89681 1.02367 1.86859 1.41935 1.44175 1.49911 1.19995 0.89703 0.94185 0.89477 1.20532 1.02004 0.99545 0.93746 1.21124 0.89833 0.97317 0.98454 1.21647 0.94559 1.04566 1.00443 1.96683 1.55808 1.82263 1.60843 1.20280 0.99648 0.93566 0.91886 1.20287 0.93676 1.03995 0.98098 0.91209 0.94242 0.93738 0.92038 0.75326 0.86777 0.84818 0.82311 0.81486 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.58 8.96 71.98 0.65 -5.93 16 2 C 0.24 11.22 2.15 44.24 0.10 11.31 16 3 H 0.02 0.93 6.63 -2.38 -0.02 0.92 16 4 C -0.53 -28.13 9.31 25.60 0.24 -27.90 16 5 H 0.06 3.46 7.98 -2.91 -0.02 3.44 16 6 C 0.03 1.77 5.45 84.66 0.46 2.23 16 7 N -0.93 -54.89 13.96 21.45 0.30 -54.59 16 8 Si 0.93 44.50 24.37 68.60 1.67 46.17 16 9 H -0.26 -11.51 6.87 99.48 0.68 -10.83 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.27 -12.85 6.53 99.48 0.65 -12.20 16 12 N -0.69 -25.40 4.89 -446.09 -2.18 -27.58 16 13 C 0.51 18.09 7.08 87.66 0.62 18.71 16 14 O -0.58 -26.28 15.80 -3.05 -0.05 -26.32 16 15 C -0.09 -2.29 3.52 -11.40 -0.04 -2.33 16 16 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 17 C 0.06 1.27 7.54 72.56 0.55 1.81 16 18 O -0.31 -8.54 11.11 -95.25 -1.06 -9.60 16 19 C 0.11 2.96 7.04 22.67 0.16 3.12 16 20 C -0.14 -2.97 10.06 22.45 0.23 -2.74 16 21 C -0.05 -0.93 9.76 22.23 0.22 -0.71 16 22 C -0.13 -2.99 6.23 22.34 0.14 -2.85 16 23 Br -0.04 -0.81 33.71 -20.37 -0.69 -1.50 16 24 C -0.03 -0.86 9.78 22.19 0.22 -0.64 16 25 C -0.16 -4.21 4.93 -19.53 -0.10 -4.30 16 26 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.04 1.73 3.27 -2.39 -0.01 1.73 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.41 12.36 8.54 -92.71 -0.79 11.57 16 31 H 0.11 2.44 7.77 -2.39 -0.02 2.42 16 32 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -70.50 315.42 1.69 -68.80 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.26 Total: 14.83 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 3.43 Total: -10.22 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.88 Total: -82.16 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.11 Total: -35.92 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.67 Total: 46.17 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -0.69 Total: -1.50 kcal Total: -70.50 1.69 -68.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121599739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.175 kcal (2) G-P(sol) polarization free energy of solvation -70.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds