Wall clock time and date at job start Tue Mar 31 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47307 * 299.99875 * 3 2 1 6 6 H 1.48507 * 109.46925 * 59.99893 * 3 2 1 7 7 C 1.38807 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99451 * 180.73350 * 7 2 1 9 9 N 1.36932 * 120.00842 * 0.73872 * 7 2 1 10 10 C 1.46961 * 120.59717 * 218.33436 * 9 7 2 11 11 C 1.53371 * 108.63672 * 235.20221 * 10 9 7 12 12 N 1.46973 * 108.63127 * 310.57509 * 11 10 9 13 13 C 1.34779 * 120.59096 * 235.19924 * 12 11 10 14 14 O 1.21515 * 119.99868 * 184.07321 * 13 12 11 15 15 C 1.48088 * 119.99964 * 4.08040 * 13 12 11 16 16 C 1.39856 * 120.92882 * 306.43422 * 15 13 12 17 17 C 1.38099 * 119.01635 * 180.02562 * 16 15 13 18 18 N 1.31849 * 120.92955 * 359.97438 * 17 16 15 19 19 C 1.31765 * 122.06381 * 0.02562 * 18 17 16 20 20 C 1.38314 * 120.88028 * 0.25632 * 19 18 17 21 21 Br 1.89102 * 120.51684 * 179.74201 * 20 19 18 22 22 C 1.46965 * 118.81168 * 55.47878 * 12 11 10 23 23 C 1.46964 * 120.59226 * 38.30696 * 9 7 2 24 24 H 0.96999 * 119.99333 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.60864 * 115.45560 * 10 9 7 26 26 H 1.08996 * 109.61044 * 354.94768 * 10 9 7 27 27 H 1.08995 * 109.60889 * 190.83362 * 11 10 9 28 28 H 1.08994 * 109.61188 * 70.31866 * 11 10 9 29 29 H 1.07999 * 120.49672 * 0.02691 * 16 15 13 30 30 H 1.08002 * 119.53744 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.55960 * 179.97438 * 19 18 17 32 32 H 1.08994 * 109.60717 * 64.26427 * 22 12 11 33 33 H 1.09004 * 109.60522 * 184.77470 * 22 12 11 34 34 H 1.09002 * 109.61662 * 244.54415 * 23 9 7 35 35 H 1.09002 * 109.61083 * 5.05313 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0125 9 7 1.3257 -2.3880 -0.0142 10 6 1.8023 -3.5367 0.7689 11 6 1.9721 -4.7353 -0.1727 12 7 0.7472 -4.8820 -0.9716 13 6 0.0734 -6.0492 -0.9862 14 8 -0.8956 -6.1824 -1.7072 15 6 0.5139 -7.1692 -0.1233 16 6 1.8329 -7.6325 -0.1645 17 6 2.2009 -8.6799 0.6570 18 7 1.3291 -9.2408 1.4717 19 6 0.0771 -8.8361 1.5426 20 6 -0.3791 -7.7972 0.7516 21 35 -2.1798 -7.2295 0.8565 22 6 0.2736 -3.7350 -1.7592 23 6 0.1009 -2.5347 -0.8130 24 1 -0.4849 0.8401 -0.0004 25 1 1.0739 -3.7795 1.5426 26 1 2.7605 -3.2939 1.2283 27 1 2.1375 -5.6397 0.4126 28 1 2.8216 -4.5638 -0.8338 29 1 2.5530 -7.1781 -0.8288 30 1 3.2173 -9.0441 0.6324 31 1 -0.6031 -9.3251 2.2243 32 1 1.0050 -3.4940 -2.5305 33 1 -0.6828 -3.9789 -2.2218 34 1 -0.7487 -2.7062 -0.1521 35 1 -0.0647 -1.6302 -1.3983 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155720649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:26 Heat of formation + Delta-G solvation = 46.171835 kcal Electronic energy + Delta-G solvation = -21567.801422 eV Core-core repulsion = 18227.509087 eV Total energy + Delta-G solvation = -3340.292335 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85708 -39.17281 -36.87593 -34.10314 -33.28667 -32.41078 -31.23992 -30.22502 -29.66171 -27.17296 -25.02166 -23.67968 -23.47504 -22.64946 -20.88512 -19.22408 -17.80445 -16.92877 -16.58720 -16.03481 -15.62571 -15.09256 -14.91985 -14.74077 -14.17240 -14.02262 -13.72719 -13.47585 -13.35383 -13.21330 -12.57921 -12.02347 -11.84044 -11.43895 -11.18250 -10.98975 -10.80143 -10.62499 -10.49373 -10.29169 -10.21733 -10.17408 -9.93962 -9.81511 -9.38463 -9.10799 -8.60888 -8.37754 -6.63357 -5.91293 -3.49425 0.50190 0.65327 1.40577 2.72999 3.13896 3.29362 3.37126 3.38688 3.43128 4.09437 4.29188 4.39191 4.45985 4.56436 4.88917 5.14599 5.25627 5.29453 5.36922 5.58133 5.64585 5.67324 5.79775 6.04412 6.12664 6.24035 6.30292 6.42443 6.63230 6.75895 7.20469 7.49868 7.53063 7.66955 7.69912 8.29050 8.38322 9.09051 9.66170 10.28406 11.15607 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003924 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.001964 B = 7134.711278 C = 7816.723699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.015 3.985 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.264 4.264 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.132 3.868 11 C 0.079 3.921 12 N -0.581 5.581 13 C 0.545 3.455 14 O -0.523 6.523 15 C -0.041 4.041 16 C -0.140 4.140 17 C 0.109 3.891 18 N -0.468 5.468 19 C 0.130 3.870 20 C -0.111 4.111 21 Br -0.010 7.010 22 C 0.086 3.914 23 C 0.161 3.839 24 H 0.257 0.743 25 H 0.023 0.977 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.151 0.849 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.025 0.975 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -17.149 1.623 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.185 4.185 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.004 3.996 11 C -0.046 4.046 12 N -0.313 5.313 13 C 0.330 3.670 14 O -0.400 6.400 15 C -0.055 4.055 16 C -0.161 4.161 17 C -0.047 4.047 18 N -0.177 5.177 19 C -0.029 4.029 20 C -0.194 4.194 21 Br 0.075 6.925 22 C -0.037 4.037 23 C 0.035 3.965 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.168 0.832 30 H 0.186 0.814 31 H 0.187 0.813 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.267 -17.480 1.799 17.575 hybrid contribution 0.616 1.491 -0.462 1.678 sum 0.883 -15.990 1.337 16.070 Atomic orbital electron populations 1.69919 1.05457 1.25798 1.53077 1.25414 0.95496 0.98597 0.99036 0.86192 0.79374 0.83610 0.77398 1.20101 1.21465 1.21414 1.19149 0.90112 0.82867 1.47205 0.91788 1.43877 1.28091 1.09045 1.50247 1.21290 0.98663 0.87553 0.92057 1.22672 0.86142 1.00640 0.95130 1.47998 1.26005 1.11224 1.46024 1.18040 0.83686 0.82392 0.82854 1.90797 1.26629 1.81496 1.41062 1.20434 0.93702 0.96184 0.95131 1.22430 0.94891 0.98077 1.00751 1.22889 0.99543 0.91643 0.90642 1.67695 1.02369 1.27973 1.19710 1.22836 0.92673 0.91796 0.95585 1.23109 0.94052 1.00819 1.01450 1.96841 1.08210 1.89737 1.97680 1.22759 0.99686 0.86326 0.94919 1.21305 0.88306 0.94595 0.92331 0.93308 0.95903 0.91354 0.90752 0.91103 0.83177 0.81387 0.81339 0.91801 0.89928 0.95674 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 11.02 55.49 0.61 -24.54 16 2 C 0.01 0.39 5.22 -17.43 -0.09 0.30 16 3 Si 0.91 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -6.83 9.51 -15.06 -0.14 -6.97 16 8 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 9 N -0.59 -13.99 2.94 -171.77 -0.51 -14.49 16 10 C 0.13 2.56 6.67 -3.60 -0.02 2.54 16 11 C 0.08 1.23 5.76 -3.59 -0.02 1.21 16 12 N -0.58 -10.24 2.94 -173.24 -0.51 -10.75 16 13 C 0.55 9.47 6.66 -12.22 -0.08 9.39 16 14 O -0.52 -10.45 15.40 5.35 0.08 -10.37 16 15 C -0.04 -0.59 4.94 -104.63 -0.52 -1.11 16 16 C -0.14 -1.53 7.52 -39.03 -0.29 -1.83 16 17 C 0.11 1.05 11.17 -17.59 -0.20 0.85 16 18 N -0.47 -5.29 10.33 -13.28 -0.14 -5.42 16 19 C 0.13 1.49 10.94 -17.55 -0.19 1.30 16 20 C -0.11 -1.52 6.28 -38.93 -0.24 -1.76 16 21 Br -0.01 -0.14 31.99 -68.01 -2.18 -2.32 16 22 C 0.09 1.67 6.62 -3.37 -0.02 1.65 16 23 C 0.16 3.73 5.43 -3.37 -0.02 3.71 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 27 H 0.07 0.97 4.62 -51.93 -0.24 0.73 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.15 1.36 7.37 -52.49 -0.39 0.97 16 30 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.61 7.01 -51.93 -0.36 1.25 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.10 2.58 6.24 -51.93 -0.32 2.26 16 LS Contribution 310.23 15.07 4.68 4.68 Total: -1.00 -30.67 310.23 -8.64 -39.31 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.81 Total: -1.09 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -1.84 Total: 9.28 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.54 Total: -55.21 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -2.18 Total: -2.32 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.67 -8.64 -39.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155720649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.483 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds