Wall clock time and date at job start Tue Mar 31 2020 22:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47307 * 299.99875 * 3 2 1 6 6 H 1.48507 * 109.46925 * 59.99893 * 3 2 1 7 7 C 1.38807 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99451 * 180.73350 * 7 2 1 9 9 N 1.36932 * 120.00842 * 0.73872 * 7 2 1 10 10 C 1.46961 * 120.59717 * 218.33436 * 9 7 2 11 11 C 1.53371 * 108.63672 * 235.20221 * 10 9 7 12 12 N 1.46973 * 108.63127 * 310.57509 * 11 10 9 13 13 C 1.34779 * 120.59096 * 235.19924 * 12 11 10 14 14 O 1.21515 * 119.99868 * 184.07321 * 13 12 11 15 15 C 1.48088 * 119.99964 * 4.08040 * 13 12 11 16 16 C 1.39856 * 120.92882 * 306.43422 * 15 13 12 17 17 C 1.38099 * 119.01635 * 180.02562 * 16 15 13 18 18 N 1.31849 * 120.92955 * 359.97438 * 17 16 15 19 19 C 1.31765 * 122.06381 * 0.02562 * 18 17 16 20 20 C 1.38314 * 120.88028 * 0.25632 * 19 18 17 21 21 Br 1.89102 * 120.51684 * 179.74201 * 20 19 18 22 22 C 1.46965 * 118.81168 * 55.47878 * 12 11 10 23 23 C 1.46964 * 120.59226 * 38.30696 * 9 7 2 24 24 H 0.96999 * 119.99333 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.60864 * 115.45560 * 10 9 7 26 26 H 1.08996 * 109.61044 * 354.94768 * 10 9 7 27 27 H 1.08995 * 109.60889 * 190.83362 * 11 10 9 28 28 H 1.08994 * 109.61188 * 70.31866 * 11 10 9 29 29 H 1.07999 * 120.49672 * 0.02691 * 16 15 13 30 30 H 1.08002 * 119.53744 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.55960 * 179.97438 * 19 18 17 32 32 H 1.08994 * 109.60717 * 64.26427 * 22 12 11 33 33 H 1.09004 * 109.60522 * 184.77470 * 22 12 11 34 34 H 1.09002 * 109.61662 * 244.54415 * 23 9 7 35 35 H 1.09002 * 109.61083 * 5.05313 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0125 9 7 1.3257 -2.3880 -0.0142 10 6 1.8023 -3.5367 0.7689 11 6 1.9721 -4.7353 -0.1727 12 7 0.7472 -4.8820 -0.9716 13 6 0.0734 -6.0492 -0.9862 14 8 -0.8956 -6.1824 -1.7072 15 6 0.5139 -7.1692 -0.1233 16 6 1.8329 -7.6325 -0.1645 17 6 2.2009 -8.6799 0.6570 18 7 1.3291 -9.2408 1.4717 19 6 0.0771 -8.8361 1.5426 20 6 -0.3791 -7.7972 0.7516 21 35 -2.1798 -7.2295 0.8565 22 6 0.2736 -3.7350 -1.7592 23 6 0.1009 -2.5347 -0.8130 24 1 -0.4849 0.8401 -0.0004 25 1 1.0739 -3.7795 1.5426 26 1 2.7605 -3.2939 1.2283 27 1 2.1375 -5.6397 0.4126 28 1 2.8216 -4.5638 -0.8338 29 1 2.5530 -7.1781 -0.8288 30 1 3.2173 -9.0441 0.6324 31 1 -0.6031 -9.3251 2.2243 32 1 1.0050 -3.4940 -2.5305 33 1 -0.6828 -3.9789 -2.2218 34 1 -0.7487 -2.7062 -0.1521 35 1 -0.0647 -1.6302 -1.3983 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155720649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:25 Heat of formation + Delta-G solvation = 26.788319 kcal Electronic energy + Delta-G solvation = -21568.641955 eV Core-core repulsion = 18227.509087 eV Total energy + Delta-G solvation = -3341.132867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93452 -40.39876 -38.46850 -35.75707 -34.34118 -33.48229 -33.00753 -31.75945 -30.64786 -28.83598 -26.38384 -25.06845 -24.74554 -23.99296 -22.36114 -20.66947 -19.22266 -18.17243 -17.94846 -17.29143 -16.78437 -16.73380 -16.18596 -16.06223 -15.46278 -15.22703 -15.15671 -15.07263 -14.78900 -14.63984 -14.03065 -13.43968 -13.01102 -12.94972 -12.80903 -12.48376 -12.46112 -12.27191 -12.05788 -12.00398 -11.71908 -11.51426 -11.41163 -10.84144 -10.60117 -10.51552 -10.04422 -9.89157 -8.54705 -7.89683 -5.51796 -0.46972 -0.21232 0.40962 1.42139 1.47991 1.49760 1.59514 1.86897 2.47910 2.51886 3.12768 3.28313 3.34995 3.55749 3.59032 3.69305 4.04499 4.17617 4.20461 4.30986 4.46280 4.47345 4.53095 4.62933 4.76051 4.77714 4.82357 5.02985 5.20002 5.34404 5.42619 5.62731 5.64563 6.30991 6.41148 6.66224 6.92407 7.11798 7.75138 8.33870 9.14927 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003924 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.001964 B = 7134.711278 C = 7816.723699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.041 4.041 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.267 4.267 8 H 0.074 0.926 9 N -0.607 5.607 10 C 0.128 3.872 11 C 0.091 3.909 12 N -0.587 5.587 13 C 0.546 3.454 14 O -0.556 6.556 15 C -0.065 4.065 16 C -0.133 4.133 17 C 0.126 3.874 18 N -0.475 5.475 19 C 0.136 3.864 20 C -0.128 4.128 21 Br -0.032 7.032 22 C 0.103 3.897 23 C 0.173 3.827 24 H 0.251 0.749 25 H 0.006 0.994 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.175 0.825 30 H 0.213 0.787 31 H 0.189 0.811 32 H 0.075 0.925 33 H 0.076 0.924 34 H -0.010 1.010 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -19.034 1.937 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.237 4.237 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.331 5.331 10 C 0.001 3.999 11 C -0.032 4.032 12 N -0.318 5.318 13 C 0.334 3.666 14 O -0.435 6.435 15 C -0.078 4.078 16 C -0.154 4.154 17 C -0.031 4.031 18 N -0.185 5.185 19 C -0.022 4.022 20 C -0.211 4.211 21 Br 0.053 6.947 22 C -0.021 4.021 23 C 0.047 3.953 24 H 0.060 0.940 25 H 0.024 0.976 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.193 0.807 30 H 0.229 0.771 31 H 0.206 0.794 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.008 0.992 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.330 -19.405 2.132 19.804 hybrid contribution -0.275 1.975 -0.518 2.061 sum 3.055 -17.430 1.614 17.769 Atomic orbital electron populations 1.70103 1.07012 1.26015 1.54952 1.26163 0.96143 1.01865 0.99519 0.85175 0.78925 0.79559 0.76583 1.18404 1.21865 1.22131 1.19520 0.90697 0.83730 1.45707 0.90862 1.44107 1.27812 1.09891 1.51240 1.21457 0.98563 0.87533 0.92306 1.22665 0.85729 1.00096 0.94739 1.48024 1.26778 1.10824 1.46155 1.18498 0.82804 0.82842 0.82501 1.90773 1.27978 1.82250 1.42478 1.20292 0.95619 0.96014 0.95843 1.22734 0.93551 0.98189 1.00949 1.23604 1.00878 0.90072 0.88547 1.67827 1.02303 1.28117 1.20204 1.23125 0.93223 0.90825 0.95060 1.23199 0.93104 1.02040 1.02742 1.96817 1.10050 1.90063 1.97765 1.22334 0.99958 0.85643 0.94188 1.20952 0.87440 0.95009 0.91947 0.93963 0.97564 0.89912 0.87454 0.89129 0.80729 0.77051 0.79424 0.90711 0.90542 0.99195 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.17 11.02 21.65 0.24 -53.94 16 2 C -0.04 -2.18 5.22 84.86 0.44 -1.74 16 3 Si 0.97 42.90 29.55 68.60 2.03 44.93 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.27 -13.72 9.51 84.03 0.80 -12.92 16 8 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 9 N -0.61 -28.88 2.94 -697.36 -2.05 -30.93 16 10 C 0.13 4.80 6.67 86.42 0.58 5.38 16 11 C 0.09 2.60 5.76 86.41 0.50 3.10 16 12 N -0.59 -20.02 2.94 -820.29 -2.41 -22.43 16 13 C 0.55 18.49 6.66 86.86 0.58 19.06 16 14 O -0.56 -22.36 15.40 -3.76 -0.06 -22.42 16 15 C -0.06 -1.71 4.94 -19.87 -0.10 -1.81 16 16 C -0.13 -2.35 7.52 22.63 0.17 -2.18 16 17 C 0.13 1.78 11.17 84.66 0.95 2.73 16 18 N -0.48 -8.89 10.33 -195.92 -2.02 -10.91 16 19 C 0.14 2.77 10.94 84.72 0.93 3.70 16 20 C -0.13 -3.30 6.28 22.69 0.14 -3.16 16 21 Br -0.03 -0.93 31.99 -20.37 -0.65 -1.58 16 22 C 0.10 4.02 6.62 86.56 0.57 4.59 16 23 C 0.17 8.34 5.43 86.56 0.47 8.81 16 24 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 25 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 26 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 27 H 0.11 2.38 4.62 -2.39 -0.01 2.37 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.18 2.21 7.37 -2.91 -0.02 2.19 16 30 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 31 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.08 3.08 7.01 -2.38 -0.02 3.06 16 34 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 35 H 0.07 3.81 6.24 -2.39 -0.01 3.80 16 Total: -1.00 -68.84 310.23 2.21 -66.63 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.12 Total: 5.10 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 6.03 Total: 25.55 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -6.25 Total: -118.21 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.42 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 35 Polarization: -0.93 SS G_CDS: -0.65 Total: -1.58 kcal Total: -68.84 2.21 -66.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155720649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.418 kcal (2) G-P(sol) polarization free energy of solvation -68.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds