Wall clock time and date at job start Tue Mar 31 2020 22:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99833 * 2 1 4 4 C 1.50691 * 109.47307 * 269.99592 * 3 2 1 5 5 H 1.08004 * 119.99907 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00199 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99856 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99861 * 180.02562 * 6 4 3 9 9 H 1.48509 * 109.47056 * 90.00468 * 8 6 4 10 10 H 1.48500 * 109.47107 * 210.00052 * 8 6 4 11 11 H 1.48494 * 109.47494 * 330.00346 * 8 6 4 12 12 C 1.34772 * 119.99904 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00093 * 185.31548 * 12 2 1 14 14 C 1.50701 * 120.00166 * 5.30709 * 12 2 1 15 15 H 1.08994 * 110.82964 * 319.66718 * 14 12 2 16 16 C 1.54709 * 110.93190 * 83.37288 * 14 12 2 17 17 O 1.43772 * 102.78451 * 143.45379 * 16 14 12 18 18 C 1.36153 * 109.21972 * 332.18644 * 17 16 14 19 19 C 1.39281 * 129.88470 * 198.87116 * 18 17 16 20 20 C 1.37931 * 120.25808 * 180.62564 * 19 18 17 21 21 C 1.38364 * 120.33627 * 0.06772 * 20 19 18 22 22 Br 1.89103 * 120.12789 * 179.81757 * 21 20 19 23 23 C 1.38427 * 119.74701 * 359.79794 * 21 20 19 24 24 C 1.37738 * 119.96894 * 0.23498 * 23 21 20 25 25 H 1.09001 * 109.47128 * 264.14391 * 1 2 3 26 26 H 1.08995 * 109.47188 * 24.14570 * 1 2 3 27 27 H 1.09001 * 109.46980 * 144.14821 * 1 2 3 28 28 H 1.09002 * 109.47405 * 30.00244 * 3 2 1 29 29 H 1.09002 * 109.46961 * 149.99986 * 3 2 1 30 30 H 0.97006 * 119.99510 * 179.97438 * 7 6 4 31 31 H 1.08997 * 110.75038 * 25.12751 * 16 14 12 32 32 H 1.09000 * 110.74919 * 261.77455 * 16 14 12 33 33 H 1.08001 * 119.87465 * 0.64446 * 19 18 17 34 34 H 1.07998 * 119.83332 * 180.09557 * 20 19 18 35 35 H 1.08002 * 120.01270 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0975 1.0961 -2.2416 6 6 3.1260 2.8780 -1.6727 7 7 3.5532 3.6181 -0.6730 8 14 3.4368 3.4175 -3.4338 9 1 2.3064 4.2602 -3.9002 10 1 4.6968 4.2008 -3.4966 11 1 3.5541 2.2206 -4.3049 12 6 2.1388 -1.1672 -0.0005 13 8 3.3478 -1.1695 0.0968 14 6 1.3902 -2.4694 -0.1218 15 1 0.4738 -2.4460 0.4677 16 6 1.0865 -2.7965 -1.6031 17 8 1.2339 -4.2258 -1.6501 18 6 2.1165 -4.6172 -0.6900 19 6 2.8368 -5.8031 -0.5690 20 6 3.6781 -5.9986 0.5064 21 6 3.8132 -5.0198 1.4750 22 35 4.9643 -5.2962 2.9497 23 6 3.1028 -3.8373 1.3603 24 6 2.2619 -3.6412 0.2872 25 1 -0.3633 -0.1049 1.0223 26 1 -0.3633 0.9377 -0.4204 27 1 -0.3633 -0.8330 -0.6019 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 4.0301 4.4441 -0.8503 31 1 1.8077 -2.3120 -2.2613 32 1 0.0688 -2.5046 -1.8622 33 1 2.7365 -6.5725 -1.3202 34 1 4.2345 -6.9202 0.5927 35 1 3.2047 -3.0706 2.1141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159543700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:51 Heat of formation + Delta-G solvation = -30.026961 kcal Electronic energy + Delta-G solvation = -21223.181403 eV Core-core repulsion = 17847.292090 eV Total energy + Delta-G solvation = -3375.889314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.026 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.47161 -38.76554 -37.62134 -34.97211 -33.06287 -32.43607 -31.84716 -29.77200 -28.74026 -27.80388 -25.99156 -24.16413 -23.27771 -22.18755 -21.56134 -18.65281 -17.59884 -16.98683 -16.74826 -16.54156 -15.75794 -15.42633 -14.92283 -14.58150 -14.22167 -14.06744 -13.67035 -13.30086 -13.12652 -12.96334 -12.54222 -12.23184 -12.05989 -11.91614 -11.69623 -11.51922 -11.26875 -11.04220 -10.96309 -10.63047 -10.31423 -10.29382 -10.22588 -9.72474 -9.18755 -8.97692 -8.50430 -8.17356 -7.77743 -6.11449 -4.17195 1.00268 1.18465 1.59784 3.07365 3.10450 3.25270 3.32796 3.36103 3.42939 3.84565 4.25262 4.38046 4.52895 4.73961 4.89103 4.94446 5.04850 5.20330 5.24553 5.30620 5.44056 5.55674 5.61694 5.78390 5.79874 5.87491 6.08048 6.10110 6.24157 6.31353 6.93532 6.95898 7.34912 7.41490 7.83905 8.13936 8.24674 8.77759 8.93081 9.48369 10.96602 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.003417 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.321875 B = 8193.446462 C = 9044.664255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.599 5.599 3 C 0.245 3.755 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.515 3.485 13 O -0.525 6.525 14 C -0.103 4.103 15 H 0.115 0.885 16 C 0.068 3.932 17 O -0.298 6.298 18 C 0.126 3.874 19 C -0.138 4.138 20 C -0.056 4.056 21 C -0.122 4.122 22 Br -0.051 7.051 23 C -0.014 4.014 24 C -0.139 4.139 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.264 0.736 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.880 -19.316 4.850 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.331 5.331 3 C 0.126 3.874 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.299 3.701 13 O -0.401 6.401 14 C -0.125 4.125 15 H 0.133 0.867 16 C -0.007 4.007 17 O -0.212 6.212 18 C 0.079 3.921 19 C -0.157 4.157 20 C -0.075 4.075 21 C -0.202 4.202 22 Br 0.034 6.966 23 C -0.033 4.033 24 C -0.141 4.141 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.828 -19.321 5.334 20.406 hybrid contribution -0.177 0.797 -1.244 1.488 sum -4.005 -18.524 4.089 19.388 Atomic orbital electron populations 1.21708 0.81346 1.02985 1.00357 1.48160 1.06227 1.07657 1.71052 1.19348 0.92708 0.77737 0.97633 1.21400 1.36962 1.06483 0.92126 0.92474 1.24933 0.95222 0.96345 0.97482 1.69931 1.38100 1.14287 1.30787 0.86498 0.77780 0.78650 0.84515 1.20562 1.21008 1.19884 1.19706 0.87848 0.84130 0.78403 1.90710 1.13687 1.86692 1.49038 1.21642 0.99494 0.93259 0.98106 0.86684 1.23834 1.04217 0.78070 0.94607 1.86835 1.57508 1.23720 1.53130 1.19639 0.89738 0.94943 0.87734 1.20141 0.98467 0.96725 1.00406 1.20764 0.96779 0.98171 0.91820 1.21470 1.03222 0.98211 0.97263 1.96675 1.62970 1.96806 1.40168 1.20193 0.91666 0.94815 0.96670 1.20234 1.01435 0.95847 0.96624 0.93474 0.90172 0.92803 0.94807 0.93619 0.92604 0.89235 0.86542 0.84522 0.84260 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 9.87 59.85 0.59 1.74 16 2 N -0.60 -11.98 2.86 -182.96 -0.52 -12.50 16 3 C 0.24 6.18 5.17 -5.20 -0.03 6.15 16 4 C -0.53 -14.56 9.38 -34.44 -0.32 -14.88 16 5 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.51 10.21 6.80 -10.99 -0.07 10.13 16 13 O -0.53 -12.80 15.31 5.55 0.09 -12.71 16 14 C -0.10 -1.54 2.47 -91.55 -0.23 -1.76 16 15 H 0.12 1.38 7.18 -51.93 -0.37 1.01 16 16 C 0.07 0.91 7.16 38.06 0.27 1.18 16 17 O -0.30 -4.16 11.11 -20.23 -0.22 -4.39 16 18 C 0.13 1.79 7.03 -38.96 -0.27 1.52 16 19 C -0.14 -1.65 10.06 -39.31 -0.40 -2.05 16 20 C -0.06 -0.64 9.76 -39.65 -0.39 -1.03 16 21 C -0.12 -1.64 6.23 -39.47 -0.25 -1.88 16 22 Br -0.05 -0.62 33.71 -68.01 -2.29 -2.91 16 23 C -0.01 -0.21 9.08 -39.69 -0.36 -0.57 16 24 C -0.14 -2.14 5.31 -104.10 -0.55 -2.69 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.18 8.03 -51.93 -0.42 0.77 16 27 H 0.05 0.60 5.81 -51.93 -0.30 0.30 16 28 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.05 1.32 7.36 -51.93 -0.38 0.93 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.09 1.36 7.91 -51.93 -0.41 0.94 16 32 H 0.12 1.16 7.44 -51.93 -0.39 0.78 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.14 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -32.42 321.17 -8.43 -40.84 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -3.93 Total: -1.73 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.10 Total: -2.48 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.21 Total: -37.83 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.14 Total: -17.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -2.29 Total: -2.91 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.42 -8.43 -40.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159543700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.815 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds